Physical Sciences and Mathematics Commons^™

Global Patterns And Predictions Of Seafloor Biomass Using Random Forests, Chih-Lin Wei, Gilbert T. Rowe, Elva Escobar-Briones, Antje Boetius, Thomas Soltwedel, M. Julian Caley, Yousria Soliman, Falk Huettmann, Fangyuan Qu, Zishan Yu, C. Roland Pitcher, Richard L. Haedrich, Mary K. Wicksten, Michael A. Rex, Jeffrey G. Baguley, Jyotsna Sharma, Roberto Danovaro, Ian R. Macdonald, Clifton C. Nunnally, Jody W. Deming, Paul Montagna, Mélanie Lévesque, Jan Marcin Weslawski, Maria Wlodarska-Kowalczuk, Baban S. Ingole, Brian J. Bett, David S. M. Billett, Andrew Yool, Bodil A. Bluhm, Katrin Iken, Bhavani E. Narayanaswamy

Biology Faculty Publication Series

A comprehensive seafloor biomass and abundance database has been constructed from 24 oceanographic institutions worldwide within the Census of Marine Life (CoML) field projects. The machine-learning algorithm, Random Forests, was employed to model and predict seafloor standing stocks from surface primary production, water-column integrated and export particulate organic matter (POM), seafloor relief, and bottom water properties. The predictive models explain 63% to 88% of stock variance among the major size groups. Individual and composite maps of predicted global seafloor biomass and abundance are generated for bacteria, meiofauna, macrofauna, and megafauna (invertebrates and fishes). Patterns of benthic standing stocks were positive …

Sei+Ii Information Integration Through Events, Mary-Kate Beard-Tisdale

University of Maine Office of Research Administration: Grant Reports

Many environmental observations are collected at different space and time scales that preclude easy integration of the data and hinder broader understanding of ecosystem dynamics. Ocean Observing Systems provide a specific example of multi-sensor systems observing several variables in different space - time regimes. This project integrates diverse space-time environmental sensor streams based on the conversion of their information content to a common higher-level abstraction: a space-time event data type. The space-time event data type normalizes across the diversity of observation level data to produce a common data type for exploration and analysis. Gulf of Maine Ocean Observing System (GOMOOS) …

The Distribution And Comparative Biogeochemistry Of Silver With Other Selected Trace Metals In Coastal Waters Near Massachusetts, Usa, Christian F. Krahforst

Graduate Doctoral Dissertations

Water samples and hydrologic data were collected during 1994-1996 in New England coastal waters near Massachusetts, USA to examine the distribution of silver and other trace metals (Cu, Pb, Cd, Zn, and Fe) in the coastal systems of Massachusetts and Cape Cod Bays. These investigations were designed to test the hypothesis that silver could serve as a tracer of dispersion of municipal wastewater in Boston Harbor into Massachusetts and Cape Cod Bays and estimate the relative contribution of wastewater discharge to the overall silver budget of the Massachusetts Bays system. Silver concentrations in both particulate and filtered (<0.4 µm) fractions averaged 103 and 117 pmol kg-1 for Boston Harbor, 34 and 10 pmol kg-1 in western Massachusetts Bay, and 11 and 7 pmol kg-1 in the central portion of Massachusetts Bay, respectively. Average Ag concentrations in southern Gulf of Maine coastal waters were 10 and 2 pmol kg-1 for filtered and particulate fractions, respectively. While nearly half of the silver existed in particulate form in Boston Harbor, nearly 80% of the silver in Massachusetts and Cape Cod Bays occurred in the filterable fraction. Coastal water surveys revealed non-conservative Ag behavior and probably the result of incomplete mixing of three or more water masses with unique Ag signatures (e.g., Merrimack River, Boston Harbor, surface and intermediate Gulf of Maine waters). Quasi-steady state mass balance approaches estimate most of the silver entering into the Massachusetts Bays system during the study period was the result of municipal wastewater discharge to Boston Harbor (84-93%).

Multivariate analyses …

A Comprehensive Uncertainty Analysis And Method Of Geometric Calibration For A Circular Scanning Airborne Lidar, Michael Oliver Gonsalves

Dissertations

This dissertation describes an automated technique for ascertaining the values of the geometric calibration parameters of an airborne lidar. A least squares approach is employed that adjusts the point cloud to a single planar surface which could be either a narrow airport runway or a dynamic sea surface. Going beyond the customary three boresight angles, the proposed adjustment can determine up to eleven calibration parameters to a precision that renders a negligible contribution to the point cloud’s positional uncertainty.

Presently under development is the Coastal Zone Mapping and Imaging Lidar (CZMIL), which, unlike most contemporary systems that use oscillating mirrors …

Chesapeake Bay Land Subsidence And Sea Level Change : An Evaluation Of Past And Present Trends And Future Outlook, John D. Boon, John M. Brubaker, David R. Forrest

Reports

Ten Chesapeake Bay water level stations presently have a combined total of 647 years of water level measurements with record lengths varying between 35 years (1975-2009) at the Chesapeake Bay Bridge Tunnel, VA, and 107 years (1903-2009) at Baltimore, MD. All ten stations, with the exception of Gloucester Point, VA, are active stations in the National Water Level Observation Network of water level stations maintained by the U.S. National Oceanic and Atmospheric Administration, Center for Operational Oceanographic Products and Services.

New technologies such as sea surface range measurements from earth-orbiting satellites now provide a global assessment of absolute sea level …

Autonomous Underwater Vehicles As Tools For Deep-Submergence Archaeology, Christopher N. Roman, Ian Roderick Mather

Graduate School of Oceanography Faculty Publications

Marine archaeology beyond the capabilities of scuba divers is a technologically enabled field. The tool suite includes ship-based systems such as towed side-scan sonars and remotely operated vehicles, and more recently free-swimming autonomous underwater vehicles (AUVs). Each of these platforms has various imaging and mapping capabilities appropriate for specific scales and tasks. Broadly speaking, AUVs are becoming effective tools for locating, identifying, and surveying archaeological sites. This paper discusses the role of AUVs in this suite of tools, outlines some specific design criteria necessary to maximize their utility in the field, and presents directions for future developments. Results are presented …

Hf Radar Performance In A Low-Energy Environment: Codar Seasonde Experience On The West Florida Shelf, Yonggang Liu, Robert H. Weisberg, Clifford R. Merz, Sage Litchtenwalner, Gary J. Kirkpatrick

Yonggang Liu

Three long-range (5 MHz) Coastal Ocean Dynamics Application Radar (CODAR) SeaSonde HF radars overlooking an array of as many as eight moored acoustic Doppler current profilers (ADCPs) have operated on the West Florida Shelf since September 2003 for the purpose of observing the coastal ocean currents. HF radar performance on this low-energy (currents and waves) continental shelf is evaluated with respect to data returns, the rms differences between the HF radar and the ADCP radial currents, bearing offsets, and radial velocity uncertainties. Possible environmental factors affecting the HF radar performance are discussed, with the findings that both the low-energy sea …

Phosphorus Uptake In Rhodomonas Salina (Wislouch) And Its Effect On Allocation And Elimination In Acartia Tonsa (Dana), Danna Palladino

OES Theses and Dissertations

Phosphorus is a key element in important biochemical compounds, such as RNA and phospholipids, and can become limiting in a variety of marine systems. The uptake of phosphorus into biochemical fractions (protein, low molecular weight (LMW) compounds, lipid, polysaccharide and nucleic acid) in Acartia tonsa fed ³³P -labeled Rhodomonas salina was examined. R. salina was cultured on two variations of one media that in one case contained phosphorus in balance and the other out of balance with relation to other standard f/2 components. The P-balanced (PB) media had a N:P ratio of 24.5, which is higher than that found …

Collaborative Research: Centers For Ocean Science Education Excellence- Ocean In The Earth-Sun System, Lee Karp-Boss, Emmanuel S. Boss

University of Maine Office of Research Administration: Grant Reports

This award establishes a new Center for Ocean Science Education Excellence (COSEE) via awards to the Bigelow Laboratory for Ocean Sciences (0528706), the University of Maine (0528702), and the University of New Hampshire (0528686). The main goals of this thematic Center are to broaden understanding of the oceans in the context of the earth and solar systems and to help the COSEE network reach rural and inland audiences. The PIs will pioneer a system of interfaces, tools, and resources to reach underserved and underrepresented groups, and to bring ocean sciences to inland audiences by presenting it in the context of …

Beneath The Salt Marsh Canopy: Loss Of Soil Strength With Increasing Nutrient Loads, R. Eugene Turner

Faculty Publications

Although the broadly observed increase in nutrient loading rates to coastal waters in the last 100 years may increase aboveground biomass, it also tends to increase soil metabolism and lower root and rhizome biomass—responses that can compromise soil strength. Fourteen different multiyear field combinations of nutrient amendments to salt marshes were made to determine the relationship between soil strength and various nitrogen, phosphorus, and nitrogen+phosphorus loadings. There was a proportional decline in soil strength that reached 35% in the 60- to 100-cm soil layer at the highest loadings and did not level off. These loading rates are equivalent to those …

Analysis Of Optical Spikes Reveals Dynamics Of Aggregates In The Twilight Zone, Nathan Briggs

Electronic Theses and Dissertations

The "biological pump," whereby phytoplankton grow in the surface ocean, aggregate, and sink, is a critical process contributing to global atmospheric CO2 drawdown and provides the vast majority of food for deep ocean and benthic ecosystems. The strength of this pump hinges on the amount of material that stick together to form larger aggregates, the sinking rates of these aggregates, and the rate at which they are consumed as they sink. However, marine aggregates, also called "marine snow," are often fragile and notoriously difficult to sample, their sinking rates are highly variable and difficult to quantify, and their concentrations can …

Clay Mineral Cycles Identified By Diffuse Spectral Reflectance In Quaternary Sediments From The Northwind Ridge: Implications For Glacial-Interglacial Sedimentation Patterns In The Arctic Ocean, Lyanne N. Yurco, Joseph D. Ortiz, Leonid Polyak, Dennis A. Darby, Kevin A. Crawford

OES Faculty Publications

A Quaternary record of fine-grained sediment composition is used to investigate Arctic Ocean climate variability on glacial-interglacial time scales. Diffuse spectral reflectance data from sediment core P1-92AR-P25 from the Northwind Ridge, north of Alaska, demonstrates cyclic variations in mineralogy. Varimax-rotated R-mode factor analysis of down-core data revealed three major mineralogical assemblages, which were then compared with the content of manganese, a proxy for basin ventilation, and thus glacial-interglacial cycles. Results indicate that factor 1, a smectite + chlorite clay assemblage, was delivered to the core site during interglacials, either by fluvial discharge or sea-ice drift from Siberian rivers or inflow …

Oxygen Isotopes As A Tracer Of Dom Processes In River-Estuary Systems, Joy Ashley Matthews

OES Theses and Dissertations

In the biogeochemical study of dissolved organic matter (DOM) in natural waters, stable isotopes are used to provide insight into both the sources of DOM and the processes affecting its alteration. Through the research presented here, oxygen isotopes are incorporated into the study of DOM through the adaptation of a pyrolysis elemental analysis isotope ratio mass spectrometer method, and sample preparation using two-stage ultrafiltration.

The application of oxygen isotopes to the study of DOM is demonstrated in two studies. First, natural abundance of δ¹⁸O in DOM is explored in the Delaware estuary. Using a two end-member mixing model, …

U.S. Globec: Nwa Georges Bank - Processes Controlling Abundance Of Dominant Copepod Species On Georges Bank: Local Dynamics And Large-Scale Forcing, Jeffrey A. Runge

University of Maine Office of Research Administration: Grant Reports

A fundamental goal of Biological Oceanography is to understand how underlying biological-physical interactions determine abundance of marine organisms. For animal populations, it is well known that factors controlling survival during early life stages (i.e., recruitment) are strong determinants of adult population size, but understanding these processes has been difficult due to model and data limitations. Recent advances in numerical modeling, together with new 3D data sets, provide a unique opportunity to study the biological-physical processes controlling zooplankton population size. This project uses an existing state-of-the-art biological/physical numerical model (FVCOM) together with the recently processed large 3D data set from the …

Marine Bioinvasions And Climate Change, James T. Carlton, Sandra C. Lindstrom, Celia M. Smith, Jennifer E. Smith

National Invasive Species Council

BACKGROUND

Invasive species are second only to habitat destruction as the greatest cause of species endangerment and global biodiversity loss. Invasive species can cause severe and permanent damage to the ecosystems they invade. Consequences of invasion include competition with or predation upon native species, hybridization, carrying or supporting harmful pathogens and parasites that may affect wildlife and human health, disturbing ecosystem function through alteration of food webs and nutrient recycling rates, acting as ecosystem engineers and altering habitat structure, and degradation of the aesthetic quality of our natural resources. In many cases we may not fully know the native animals …

Abundance And Ecological Significance Of The Clam Rangia Cuneata (Sowerby, 1831) In The Upper Barataria Estuary (Louisiana, Usa), Wai Hing Wong, Nancy N. Rabalais, R. Eugene Turner

Faculty Publications

We proposed that Rangia cuneata (Sowerby, 1831) is an important estuarine bivalve with ecological significance in three coastal lakes in Barataria Bay, Gulf of Mexico—Lake Cataouatche, Lake Salvador and Lac des Allemands. Our goals were to determine the abundance and distribution of Rangia in these lakes and to measure clearance times to elucidate its potential impacts on phytoplankton communities. The estimated average densities of R. cuneata in Lake Cataouatche, Lake Salvador, and Lac des Allemands were 63, 157, and 107 individuals m−2, respectively, which is 30% lower than that observed in nearby Lake Pontchartrain. The size of clams in Lake …

Measurement And Interpolation Of Sea Surface Temperature And Salinity In The Tropical Pacific: A 9,000 Nautical Mile Research Odyssey, Amber Brooks

Earth and Soil Sciences

The purpose of this project was to compare spline and inverse distance weighting interpolation tools on data collected in the tropical Pacific Ocean by ship and data from a global network of CTD floats, known as Argo floats (fig.1), to provide evidence that technological advancement and integration is aiding our understanding of the ocean-atmosphere system of planet Earth. Thirty-one sea surface temperature and salinity samples were manually taken across a 9,000 nautical mile trek of the Pacific Ocean for the months of April, May and June 2008. Argo ASCII globally gridded monthly averaged sea surface temperature and salinity data, from …

New Bedford/Fairhaven Municipal Harbor Plan, Fort Point Associates, Inc., Apex Companies, Llc, Urban Harbors Institute, University Of Massachusetts Boston, Fxm Associates

Urban Harbors Institute Publications

The historic harbor lying between the City of New Bedford and Town of Fairhaven has shaped the identities and economies of these two municipalities for centuries. Today, the Harbor is one of nation’s preeminent fishing ports, ranked #1 nationally in 2007 in dollar value ($268 million) of fish landings with an estimated total economic regional impact of nearly $1 billion. The New Bedford’s seafood processing industry has grown in size and sophistication in recent years and is an internationally established center for this industry. Marine service and vessel repair industries, centered in Fairhaven, have an excellent reputation with commercial fleets …

Application Of Structured Light Imaging For High Resolution Mapping Of Underwater Archaeological Sites, Chris Roman, Gabrielle Inglis, James Rutter

Graduate School of Oceanography Faculty Publications

This paper presents results from recent work using structured light laser profile imaging to create high resolution bathymetric maps of underwater archaeological sites. Documenting the texture and structure of submerged sites is a difficult task and many applicable acoustic and photographic mapping techniques have recently emerged. This effort was completed to evaluate laser profile imaging in comparison to stereo imaging and high frequency multibeam mapping. A ROV mounted camera and inclined 532 nm sheet laser were used to create profiles of the bottom that were then merged into maps using platform navigation data. These initial results show very promising resolution …

Rhizocephalan Parasites Of Mud Crabs In South Carolina Estuaries, Erin Burnette

Honors Theses

Rhizocephalan parasites often infect commercially important crustacean species such as the blue crab (Callinectes sapidus). In this experiment, the prevalence of rhizocephalan parasites was determined by sampling mud crabs (Panopeus herbstii) in three different locations; Huntington Beach State Park, Waites Island, and Murrells Inlet. Crabs were determined to be parasitized by the presence of an externae extruding from their apron. Unparasitized crabs were also collected to serve as a control group. The externa were removed and DNA extractions were performed. Polymerase chain reactions (PCR) were done to prove whether the crabs were parasitized by Loxothylacus texanus or Loxothylacus panopaei. Results …

Preferential Fish Consumption Based On Omega-3 Fatty Acids And Mercury Concentrations For Maximum Health Benefits, Katrina Smith

Honors Theses

The regular consumption of seafood offers a variety of protective effects, including the reduction of the risk of cardiovascular disease and stroke, due to the presence of omega-3 fatty acids in fish. These protective effects may be diminished by the contamination of seafood by mercury. Mercury increases the risk of cardiovascular problems and impedes neurological development. The objective of this project was to determine the fish species that are appropriate for consumption based on low levels of mercury and recommended intake levels of omega-3 fatty acids. Species that are high in omega-3s and low in mercury include salmon, trout and …

Late Spring And Summer Phytoplankton Community Dynamics On Georges Bank With Emphasis On Diatoms, Alexandrium Spp., And Other Dinoflagellates, Rachel Gettings

Electronic Theses and Dissertations

Georges Bank is a highly productive continental shelf system in the Northwest Atlantic that has historically supported a rich fishery. Part of that productivity stems from annual spring diatom bloom, which is followed by post-bloom populations of flagellates, including the toxic dinoflagellate Alexandrium spp., responsible for paralytic shellfish poisoning. While the general oceanography of Georges Bank has been well studied, far less is known about phytoplankton community dynamics or even basic species distributions and abundance. This thesis is driven in part by the possible competitive interactions among species of phytoplankton which are thought to influence Alexandrium blooms on the Bank. …

Barcoding Of Arrow Worms (Phylum Chaetognatha) From Three Oceans: Genetic Diversity And Evolution Within An Enigmatic Phylum, Robert M. Jennings, Ann Bucklin, Annelies Pierrot-Bults

Biology Faculty Publication Series

Arrow worms (Phylum Chaetognatha) are abundant planktonic organisms and important predators in many food webs; yet, the classification and evolutionary relationships among chaetognath species remain poorly understood. A seemingly simple body plan is underlain by subtle variation in morphological details, obscuring the affinities of species within the phylum. Many species achieve near global distributions, spanning the same latitudinal bands in all ocean basins, while others present disjunct ranges, in some cases with the same species apparently found at both poles. To better understand how these complex evolutionary and geographic variables are reflected in the species makeup of chaetognaths, we analyze …

The Role Of The Alaskan Stream In Modulating The Bering Sea Climate, Tal Ezer, Lie-Yauw Oey

CCPO Publications

A numerical ocean circulation model with realistic topography, but with an idealized forcing that includes only lateral transports is used to study the role of the Alaskan Stream (AS) in modulating the Bering Sea (BS) variability. Sensitivity experiments, each one with a different strength of the AS transport reveal a nonlinear BS response. An increase of AS transport from 10 to 25 Sv causes warming (similar to 0.25 degrees C mean, similar to 0.5 degrees C maximum) and sea level rise in the BS shelf due to increased transports of warmer Pacific waters through the eastern passages of the Aleutian …

Fun, Fun, Fun Till The Waters Take The Beaches Away, Briana Ellis

Maria Dittman Library Research Competition: Student Award Winners

No abstract provided.

Differential Damages Sustained From Hurricane Ike On Varying Growth Forms Of Coral At Distinct Locations Off The Coast Of South Caicos, Turks And Caicos Islands, Caitlyn A. Kenny

Pell Scholars and Senior Theses

In September 2008, Hurricane Ike hit South Caicos, Turks and Caicos Islands as a Category 4 hurricane. This study examines the differential damages caused to varying common growth forms, size, locations, and depths of coral by Hurricane Ike on South Caicos reefs. Belt transect techniques as well as line intercept techniques were conducted at nine sites, looking at 14 common species of coral, representing four different growth forms. A total of 9,011 coral colonies were surveyed. 2,832 colonies (31.4%) were found to have at least one type of damage. It was expected that branching and digitate growth forms as well …

Sustainable Portland: Implementation Series 3, New England Environmental Finance Center

Climate Change

This report is the third in a series of efforts by students at the Muskie School of Public Service, Community Planning and Development Master’s program, in a core class called “Sustainable Communities.” In this course students seek to understand principles of sustainability and how efforts to implement Sustainability programs can become more successful. The report assembles term papers students completed on particular efforts by municipalities, universities, and other groups to achieve sustainability goals. Students worked on each project in a service learning format with real world clients. They were asked to fashion their papers around lessons learned by other organizations …

A Test Of The Area Of Refuge Hypothesis In Indo-Pacific Marine Biogeography, Jonnell C. Sanciangco

Biological Sciences Theses & Dissertations

Many hypotheses have been proposed to explain the marine biogeographic patterns of species richness of the Indo-Pacific. One of these hypotheses suggests that available habitat area is the main predictor of species richness. This is the basis for the area of refuge hypothesis that attempts to explain the global maxima of species richness found in the Coral Triangle, the area encompassing mostly the Philippines, Indonesia, and Malaysia. This species-area effect also has habitat heterogeneity as a potential component. The purpose of this study is to test the effects of habitat availability predictors, such as shallow water area and coastline length …

U.S.-Globec: Nep Phase Iiib-Cgoa: A Synthesis Of Climate-Forced Variability On Mesoscale Structure In The Cgoa With Direct Comparisons To The Ccs, Andrew C. Thomas

University of Maine Office of Research Administration: Grant Reports

A variety of extreme climate events occurred during the period of US GLOBEC monitoring and process studies in the NEP (1997-2004). These provide an unprecedented opportunity to examine a range of climate variability experienced by the coastal Gulf of Alaska (CGOA). By relating these climate events to regional physical and biological observations, using multiple and diverse data sources (GLOBEC observations, historical data sets and reanalyses, satellites, models), we can determine how these events affect mesoscale ocean variability in the CGOA and its related target populations (the primary goal of the NEP program). We can then directly compare these responses to …

Design Of A Software Framework Prototype For Scientific Model Interoperability, Eric Fritzinger, Sohei Okamoto

2010 Annual Nevada NSF EPSCoR Climate Change Conference

19 PowerPoint slides Session 2: Infrastructure Convener: Sergiu Dascalu, UNR Abstract: -What are models? -Mathematical models used to describe a system -E.g. Atmospheric, Oceanic, Ecological, etc… -Algorithmic calculations which take input and produce estimated results -Weather forecasting, global warming predictions, sea level estimations, etc… -Models are invaluable