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Full-Text Articles in Physical Sciences and Mathematics

Boundary Homogenization And Capture Time Distributions Of Semipermeable Membranes With Periodic Patterns Of Reactive Sites, Andrew J. Bernoff, Daniel Schmidt, Alan E. Lindsay Sep 2018

Boundary Homogenization And Capture Time Distributions Of Semipermeable Membranes With Periodic Patterns Of Reactive Sites, Andrew J. Bernoff, Daniel Schmidt, Alan E. Lindsay

All HMC Faculty Publications and Research

We consider the capture dynamics of a particle undergoing a random walk in a half- space bounded by a plane with a periodic pattern of absorbing pores. In particular, we numerically measure and asymptotically characterize the distribution of capture times. Numerically we develop a kinetic Monte Carlo (KMC) method that exploits exact solutions to create an efficient particle- based simulation of the capture time that deals with the infinite half-space exactly and has a run time that is independent of how far from the pores one begins. Past researchers have proposed homogenizing the surface boundary conditions, replacing the reflecting (Neumann) …


Numerical Approximation Of Diffusive Capture Rates By Planar And Spherical Surfaces With Absorbing Pores, Andrew J. Bernoff, Alan E. Lindsay Jan 2018

Numerical Approximation Of Diffusive Capture Rates By Planar And Spherical Surfaces With Absorbing Pores, Andrew J. Bernoff, Alan E. Lindsay

All HMC Faculty Publications and Research

In 1977 Berg and Purcell published a landmark paper entitled Physics of Chemore- ception, which examined how a bacterium can sense a chemical attractant in the fluid surrounding it [H. C. Berg and E. M. Purcell, Biophys J, 20 (1977), pp. 193–219]. At small scales the attrac- tant molecules move by Brownian motion and diffusive processes dominate. This example is the archetype of diffusive signaling problems where an agent moves via a random walk until it either strikes or eludes a target. Berg and Purcell modeled the target as a sphere with a set of small circular targets (pores) that …


Computing Eigenmodes Of Elliptic Operators On Manifolds Using Radial Basis Functions, Vladimir Delengov Jan 2018

Computing Eigenmodes Of Elliptic Operators On Manifolds Using Radial Basis Functions, Vladimir Delengov

CGU Theses & Dissertations

In this work, a numerical approach based on meshless methods is proposed to obtain eigenmodes of Laplace-Beltrami operator on manifolds, and its performance is compared against existing alternative methods. Radial Basis Function (RBF)-based methods allow one to obtain interpolation and differentiation matrices easily by using scattered data points. We derive expressions for such matrices for the Laplace-Beltrami operator via so-called Reilly’s formulas and use them to solve the respective eigenvalue problem. Numerical studies of proposed methods are performed in order to demonstrate convergence on simple examples of one-dimensional curves and two-dimensional surfaces.


Decoding Book Barcode Images, Yizhou Tao Jan 2018

Decoding Book Barcode Images, Yizhou Tao

CMC Senior Theses

This thesis investigated a method of barcode reconstruction to address the recovery of a blurred and convoluted one-dimensional barcode. There are a lot of types of barcodes used today, such as Code 39, Code 93, Code 128, etc. Our algorithm applies to the universal barcode, EAN 13. We extend the methodologies proposed by Iwen et al. (2013) in the journal article "A Symbol-Based Algorithm for Decoding barcodes." The algorithm proposed in the paper requires a signal measured by a laser scanner as an input. The observed signal is modeled as a true signal corrupted by a Gaussian convolution, additional noises, …