Physical Sciences and Mathematics Commons^™

Visual Analytics Of Electronic Health Records With A Focus On Acute Kidney Injury, Sheikh S. Abdullah

Electronic Thesis and Dissertation Repository

The increasing use of electronic platforms in healthcare has resulted in the generation of unprecedented amounts of data in recent years. The amount of data available to clinical researchers, physicians, and healthcare administrators continues to grow, which creates an untapped resource with the ability to improve the healthcare system drastically. Despite the enthusiasm for adopting electronic health records (EHRs), some recent studies have shown that EHR-based systems hardly improve the ability of healthcare providers to make better decisions. One reason for this inefficacy is that these systems do not allow for human-data interaction in a manner that fits and supports …

Computational Modelling Of Human Transcriptional Regulation By An Information Theory-Based Approach, Ruipeng Lu

Electronic Thesis and Dissertation Repository

ChIP-seq experiments can identify the genome-wide binding site motifs of a transcription factor (TF) and determine its sequence specificity. Multiple algorithms were developed to derive TF binding site (TFBS) motifs from ChIP-seq data, including the entropy minimization-based Bipad that can derive both contiguous and bipartite motifs. Prior studies applying these algorithms to ChIP-seq data only analyzed a small number of top peaks with the highest signal strengths, biasing their resultant position weight matrices (PWMs) towards consensus-like, strong binding sites; nor did they derive bipartite motifs, disabling the accurate modelling of binding behavior of dimeric TFs.

This thesis presents a novel …

Machine Learning Of Lifestyle Data For Diabetes, Yan Luo

Electronic Thesis and Dissertation Repository

Self-Monitoring of Blood Glucose (SMBG) for Type-2 Diabetes (T2D) remains highly challenging for both patients and doctors due to the complexities of diabetic lifestyle data logging and insufficient short-term and personalized recommendations/advice. The recent mobile diabetes management systems have been proved clinically effective to facilitate self-management. However, most such systems have poor usability and are limited in data analytic functionalities. These two challenges are connected and affected by each other. The ease of data recording brings better data for applicable data analytic algorithms. On the other hand, the irrelevant or inaccurate data input will certainly commit errors and noises. The …

Deep Learning Via Stacked Sparse Autoencoders For Automated Voxel-Wise Brain Parcellation Based On Functional Connectivity, Céline Gravelines

Electronic Thesis and Dissertation Repository

Functional brain parcellation – the delineation of brain regions based on functional connectivity – is an active research area lacking an ideal subject-specific solution independent of anatomical composition, manual feature engineering, or heavily labelled examples. Deep learning is a cutting-edge area of machine learning on the forefront of current artificial intelligence developments. Specifically, autoencoders are artificial neural networks which can be stacked to form hierarchical sparse deep models from which high-level features are compressed, organized, and extracted, without labelled training data, allowing for unsupervised learning. This thesis presents a novel application of stacked sparse autoencoders to the problem of parcellating …