Physical Sciences and Mathematics | Open Access Articles

Ecology And Genomics Of An Important Crop Wild Relative As A Prelude To Agricultural Innovation, Eric J.B. Von Wettberg, Peter L. Chang, Fatma Başdemir, Noelia Carrasquila-Garcia, Lijalem Balcha Korbu, Susan M. Moenga, Gashaw Bedada, Alex Greenlon, Ken S. Moriuchi, Vasantika Singh, Matilde A. Cordeiro, Nina V. Noujdina, Kassaye Negash Dinegde, Syed Gul Abbas Shah Sani, Tsegaye Getahun, Lisa Vance, Emily Bergmann, Donna Lindsay, Bullo Erena Mamo, Emily J. Warschefsky, Emmanuel Dacosta-Calheiros, Edward Marques, Mustafa Abdullah Yilmaz, Ahmet Cakmak, Janna Rose, Andrew Migneault, Christopher P. Krieg, Sevgi Saylak, Hamdi Temel, Maren L. Friesen, Eleanor Siler

College of Agriculture and Life Sciences Faculty Publications

Domesticated species are impacted in unintended ways during domestication and breeding. Changes in the nature and intensity of selection impart genetic drift, reduce diversity, and increase the frequency of deleterious alleles. Such outcomes constrain our ability to expand the cultivation of crops into environments that differ from those under which domestication occurred. We address this need in chickpea, an important pulse legume, by harnessing the diversity of wild crop relatives. We document an extreme domestication-related genetic bottleneck and decipher the genetic history of wild populations. We provide evidence of ancestral adaptations for seed coat color crypsis, estimate the impact of …

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Agroecology In Canada: Towards An Integration Of Agroecological Practice, Movement, And Science, Marney E. Isaac, S. Ryan Isakson, Bryan Dale, Charles Z. Levkoe, Sarah K. Hargreaves, V. Ernesto Méndez, Hannah Wittman, Colleen Hammelman, Jennifer C. Langill, Adam R. Martin, Erin Nelson, Michael Ekers, Kira A. Borden, Stephanie Gagliardi, Serra Buchanan, Sarah Archibald, Astrid Gálvez Ciani

College of Agriculture and Life Sciences Faculty Publications

This article surveys the current state of agroecology in Canada, giving particular attention to agroecological practices, the related social movements, and the achievements of agroecological science. In each of these realms, we find that agroecology emerges as a response to the various social and ecological problems associated with the prevailing industrial model of agricultural production that has long been promoted in the country under settler colonialism. Although the prevalence and prominence of agroecology is growing in Canada, its presence is still small and the support for its development is limited. We provide recommendations to achieve a more meaningful integration of …

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Pod Shattering: A Homologous Series Of Variation Underlying Domestication And An Avenue For Crop Improvement, Ezgi Ogutcen, Anamika Pandey, Mohd Kamran Khan, Edward Marques, R. Varma Penmetsa, Abdullah Kahraman, Eric J.B. Von Wettberg

College of Agriculture and Life Sciences Faculty Publications

All rights reserved. In wild habitats, fruit dehiscence is a critical strategy for seed dispersal; however, in cultivated crops it is one of the major sources of yield loss. Therefore, indehiscence of fruits, pods, etc., was likely to be one of the first traits strongly selected in crop domestication. Even with the historical selection against dehiscence in early domesticates, it is a trait still targeted in many breeding programs, particularly in minor or underutilized crops. Here, we review dehiscence in pulse (grain legume) crops, which are of growing importance as a source of protein in human and livestock diets, and …

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Climate Change Mitigation Beyond Agriculture: A Review Of Food System Opportunities And Implications, Meredith T. Niles, Richie Ahuja, Todd Barker, Jimena Esquivel, Sophie Gutterman, Martin C. Heller, Nelson Mango, Diana Portner, Rex Raimond, Cristina Tirado, Sonja Vermeulen

College of Agriculture and Life Sciences Faculty Publications

A large body of research has explored opportunities to mitigate climate change in agricultural systems; however, less research has explored opportunities across the food system. Here we expand the existing research with a review of potential mitigation opportunities across the entire food system, including in pre-production, production, processing, transport, consumption and loss and waste. We detail and synthesize recent research on the topic, and explore the applicability of different climate mitigation strategies in varying country contexts with different economic and agricultural systems. Further, we highlight some potential adaptation co-benefits of food system mitigation strategies and explore the potential implications of …

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Capturing Variation In Lens (Fabaceae): Development And Utility Of An Exome Capture Array For Lentil, Ezgi Ogutcen, Larissa Ramsay, Eric Bishop Von Wettberg, Kirstin E. Bett

College of Agriculture and Life Sciences Faculty Publications

Premise of the Study: Lentil is an important legume crop with reduced genetic diversity caused by domestication bottlenecks. Due to its large and complex genome, tools for reduced representation sequencing are needed. We developed an exome capture array for use in various genetic diversity studies. Methods: Based on the CDC Redberry draft genome, we developed an exome capture array using multiple sources of transcript resources. The probes were designed to target not only the cultivated lentil, but also wild species. We assessed the utility of the developed method by applying the generated data set to population structure and phylogenetic analyses. …

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Genetic Diversity, Population Structure, And Genetic Correlation With Climatic Variation In Chickpea (Cicer Arietinum) Landraces From Pakistan, Syed Gul Abbas Shah Sani, Peter L. Chang, Asif Zubair, Noelia Carrasquilla-Garcia, Matilde Cordeiro, Ramachandra Varma Penmetsa, M. Farooq H. Munis, Sergey V. Nuzhdin, Douglas R. Cook, Eric J. Von Wettberg

College of Agriculture and Life Sciences Faculty Publications

Chickpea (Cicer arietinum L.) production in arid regions, such as those predominant in Pakistan, faces immense challenges of drought and heat stress. Addressing these challenges is made more difficult by the lack of genetic and phenotypic characterization of available cultivated varieties and breeding materials. Genotyping-by-sequencing offers a rapid and cost-effective means to identify genome-wide nucleotide variation in crop germplasm. When combined with extended crop phenotypes deduced from climatic variation at sites of collection, the data can predict which portions of genetic variation might have roles in climate resilience. Here we use 8113 single nucleotide polymorphism markers to determine genetic variation …

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A Cross-Country Analysis Of Climate Shocks And Smallholder Food Insecurity, Meredith T. Niles, Jonathan D. Salerno

College of Agriculture and Life Sciences Faculty Publications

Future climate changes will affect smallholder farmers in the developing world, posing threats to household food security. Nevertheless, there remains limited comparable evidence across multiple countries and regions regarding the global extent of climate shocks affecting smallholder food security. We examine data from 5,299 household surveys across 15 countries in Latin America, Africa and South Asia to assess the extent of climate shocks and their association with food insecurity, as well as what strategies may help buffer against climate shocks. We find that 71% of households reported experiencing a climate shock in the previous five years. Fifty-four percent reported experiencing …

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The Impact Of Genetic Changes During Crop Domestication, Petr Smýkal, Matthew N. Nelson, Jens D. Berger, Eric J.B. Von Wettberg

College of Agriculture and Life Sciences Faculty Publications

Humans have domesticated hundreds of plant and animal species as sources of food, fiber, forage, and tools over the past 12,000 years, with manifold effects on both human society and the genetic structure of the domesticated species. The outcomes of crop domestication were shaped by selection driven by human preferences, cultivation practices, and agricultural environments, as well as other population genetic processes flowing from the ensuing reduction in effective population size. It is obvious that any selection imposes a reduction of diversity, favoring preferred genotypes, such as nonshattering seeds or increased palatability. Furthermore, agricultural practices greatly reduced effective population sizes …

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College of Agriculture and Life Sciences Faculty Publications

College of Agriculture and Life Sciences Faculty Publications

Pod Shattering: A Homologous Series Of Variation Underlying Domestication And An Avenue For Crop Improvement, Ezgi Ogutcen, Anamika Pandey, Mohd Kamran Khan, Edward Marques, R. Varma Penmetsa, Abdullah Kahraman, Eric J.B. Von Wettberg

College of Agriculture and Life Sciences Faculty Publications

Climate Change Mitigation Beyond Agriculture: A Review Of Food System Opportunities And Implications, Meredith T. Niles, Richie Ahuja, Todd Barker, Jimena Esquivel, Sophie Gutterman, Martin C. Heller, Nelson Mango, Diana Portner, Rex Raimond, Cristina Tirado, Sonja Vermeulen

College of Agriculture and Life Sciences Faculty Publications

Capturing Variation In Lens (Fabaceae): Development And Utility Of An Exome Capture Array For Lentil, Ezgi Ogutcen, Larissa Ramsay, Eric Bishop Von Wettberg, Kirstin E. Bett

College of Agriculture and Life Sciences Faculty Publications

College of Agriculture and Life Sciences Faculty Publications

A Cross-Country Analysis Of Climate Shocks And Smallholder Food Insecurity, Meredith T. Niles, Jonathan D. Salerno

College of Agriculture and Life Sciences Faculty Publications

The Impact Of Genetic Changes During Crop Domestication, Petr Smýkal, Matthew N. Nelson, Jens D. Berger, Eric J.B. Von Wettberg

College of Agriculture and Life Sciences Faculty Publications