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All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Theses/Dissertations

2012

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Full-Text Articles in Physical Sciences and Mathematics

Sigtree: An Automated Meta-Analytic Approach To Find Significant Branches In A Phylogenetic Tree, Todd R. Jones Aug 2012

Sigtree: An Automated Meta-Analytic Approach To Find Significant Branches In A Phylogenetic Tree, Todd R. Jones

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

An experiment was performed on two groups of mice, the first group receiving a refined wheat diet, and the second group receiving a whole wheat diet. The levels of abundance of hundreds of bacteria in the guts of the mice were measured. Of interest was whether the levels of these bacteria were different depending on type of diet. In addition, it was desired to examine differences by diet in all of the families of bacteria. These family relationships are represented in a tree, and it was determined helpful to color the branches of this tree based on the differences of …


Homogenization Of Large-Scale Movement Models In Ecology With Application To The Spread Of Chronic Wasting Disease In Mule Deer, Martha J. Garlick May 2012

Homogenization Of Large-Scale Movement Models In Ecology With Application To The Spread Of Chronic Wasting Disease In Mule Deer, Martha J. Garlick

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Chronic wasting disease (CWD) is a transmissible spongiform encephalopathy (TSE) that affects deer, elk, and moose. TSEs are prion diseases which include mad cow disease and scrapie in sheep and goats. The disease agent is a misshapen protein called a prion, which causes lesions in the brain, and to date, there is no cure. CWD is a slow-developing, fatal disease, which is rare in the free-ranging mule deer population of Utah. Infected deer shed prions into the environment through saliva, feces, and decaying carcasses. These prions remain infective in soils for many years and healthy deer may contract CWD by …