Physical Sciences and Mathematics Commons^™

Linking Bioturbation And Sensory Biology: Chemoreception Mechanisms In Deposit-Feeding Polychaetes, Sara M. Lindsay, Paul Rawson

University of Maine Office of Research Administration: Grant Reports

Soft-sediment benthic habitats are ubiquitous in the marine environment and typically feature macrofaunal assemblages that include large numbers of deposit-feeding invertebrates such as polychaetes, bivalves, gastropods, crustaceans, holothurians, and hemichordates. Via their feeding, modulated in part by chemoreception, these organisms have profound effects on the ecology, biology, geology, and chemistry of their habitats. Very little is known, however, concerning the physiology and molecular biology of chemoreception in deposit feeders.

This research is a comprehensive investigation of the sensory mechanisms coordinating chemoreception in deposit feeding spionid polychaetes. It directly addresses this lack of information and will therefore have a significant impact …

On The Use Of Modis Evi To Assess Gross Primary Productivity Of North American Ecosystems, Daniel A. Sims, Abdullah Rahman, Vicente D. Cordova, Bassil Z. El-Masri, Dennis D. Baldocchi, Lawrence B. Flanagan, Allen H. Goldstein, David Y. Hollinger, Laurent Misson, Russell K. Monson, Walter C. Oechel, Hans P. Schmid, Steven C. Wofsy, Liukang Xu

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

[1] Carbon flux models based on light use efficiency (LUE), such as the MOD17 algorithm, have proved difficult to parameterize because of uncertainties in the LUE term, which is usually estimated from meteorological variables available only at large spatial scales. In search of simpler models based entirely on remote‐sensing data, we examined direct relationships between the enhanced vegetation index (EVI) and gross primary productivity (GPP) measured at nine eddy covariance flux tower sites across North America. When data from the winter period of inactive photosynthesis were excluded, the overall relationship between EVI and tower GPP was better than that between …

Evaluation Of Striped Bass Stocks In Virginia: Monitoring And Tagging Studies, 2004-2008, 1 September 2005 - 31 August 2006, Philip W. Sadler, John M. Hoenig, Robert E. Harris

Reports

This report presents the results of striped bass (Morone saxatilis) tagging and monitoring activities in Virginia during the period 1 September 2005 through 31 August 2006. It includes an assessment of the biological characteristics of striped bass taken from the 2006 spring spawning run, estimates of annual survival and fishing mortality based on annual spring tagging, and the preliminary results of the fall 2005 study that documents the prevalence of mycobacterial infections of striped bass in Chesapeake Bay. The information contained in this report is required by the Atlantic States Marine Fisheries Commission and is used to implement a coordinated …

Validity, Identification, And Distribution Of The Roundscale Spearfish, Tetrapturus Georgii (Teleostei: Istiophoridae): Morphological And Molecular Evidence, Mahmood S. Shivji, Jennifer E. Magnussen, Lawrence R. Beerkircher, George Hinteregger, Dennis W. Lee, Joseph E. Serafy, Eric D. Prince

Marine & Environmental Sciences Faculty Articles

The roundscale spearfish, Tetrapturus georgii Lowe, 1840, is known only from four specimens from the Mediterranean and eastern North Atlantic. Additional specimens have not been identified since 1961, making the validity and distribution of this species unclear. Analysis of 16 billfish specimens from the western North Atlantic on the basis of scale morphology, anus position, and mitochondrial DNA confirms the validity of this species and extends its distribution. Mid-lateral scales are soft, notably rounded anteriorly, and bear 2–3 points distinct from those of the sympatric longbill spearfish (Tetrapturus pfluegeri Robins and de Sylva, 1963) and white marlin (Tetrapturus …

Morphological And Phylogenetic Description Of An Unusual Amphidinium (Dinophyceae) Species, Tyler Cyronak, Isaac R. Santos

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Amphidinium carterae, an important harmful algal species that produces powerful antifungal and hemolytic compounds (amphidinols) and cytotoxic macrolides (amphidinolides) is ubiquitous in coastal waters. Samples from coral rubble contained an unusual and previously unreported Amphidinium (D2) with a circular outline. Genetic analysis of clone D2 of this species, involving the sequencing of large subunit (LSU) rDNA, revealed a relationship between Amphidinium sp. D2 and both A. carterae and A. massartii. However, morphological and genetic differences suggest that Amphidinium sp. D2 is not conspecific with A. carterae or A. massartii. Further studies to describe this species are presently …

Documenting Decadal Spatial Changes In Seagrass And Acropora Palmata Cover By Aerial Photography Analysis In Vieques, Puerto Rico: 1937-2000, Luz Raquel Hernandez-Cruz, Samuel J. Purkis, Bernhard Riegl

Marine & Environmental Sciences Faculty Articles

Aerial photographs from 1937–2000 of Bahía Salina del Sur on vieques, Puerto Rico were analyzed to detect and describe spatial changes in the areal cover of sea-grass beds in Bahía Salina del Sur. The images were pre-processed to minimize noise and unsupervised classification was used to detect areas colonized by seagrass. The number of individual seagrass patches, direction, and characteristic of growth were quantified and described. Seagrass coverage increased by 85.8% over the 64-yr period and this increase was best described by a 2nd order polynomial function (r² = 0.91). Between 1937 and 2000, the spatial expression of the …

Some Preservation Techniques For (Deep Water) Coral Samples For Subsequent Molecular Studies: A Special Supplement From Harbor Branch Oceanographic Institute, Jose V. Lopez

Marine & Environmental Sciences Faculty Reports

Around the time that the thirteen original Atlantic colonies were fighting for independence from Britain, there existed little agreement among naturalists as to the nature of corals. Were they inanimate (stones), plants, animals, or intermediate between the latter two (zoophytes)? This diversity of definition and opinions undoubtedly produced considerable confusion and disagreement among naturalists interested in such things. The symbiotic nature of algal cells in the tissues of some corals was also not well understood. It was not until the Darwinian period in the nineteenth century that little doubt remained, and therefore it was generally agreed, that corals were actually …

Photoreductive Dissolution Of Ferrihydrite By Methanesulfinic Acid: Evidence Of A Direct Link Between Dimethylsulfide And Iron-Bioavailability, Anne M. Johansen, Jennifer M. Key

All Faculty Scholarship for the College of the Sciences

Within open‐ocean regions where excess macronutrients are present, phytoplankton growth is limited by the bioavailability of iron supplied to these areas primarily within atmospheric aerosols of crustal origin. However, processes that control the abundance of biologically accessible iron in these aerosols are largely unknown. Here we show that dissolution of ferrihydrite, a surrogate iron(oxy)hydroxide phase found in atmospheric waters, is enhanced in the presence of methanesulfinic acid (MSIA, CH₃SO₂H, a dimethylsulfide (DMS) oxidation intermediate) in laboratory irradiation experiments with aqueous suspensions that simulate marine aerosol particles. The increased release of soluble Fe(II) is attributed to a …

Collaborative Research: Globec-01: Tidal Front Mixing And Exchange On Georges Bank: Controls On The Production Of Phytoplankton, Zooplankton, And Larval Fishes, David W. Townsend, Robert Houghton

University of Maine Office of Research Administration: Grant Reports

Georges Bank supports a rich fishery because: (1) large portions of the bank are shallow enough that light-limitation of phytoplankton is usually not important; (2) deep waters rich in inorganic nutrients are available for mixing onto the bank; and (3) the Bank's clockwise circulation can retain the planktonic stages of important fish species. The tidally mixed front (TMF) is central to the productivity of Georges Bank through the processes of nutrient injection in the north and retention of larvae on the south flank. These two regions are connected by a circulation pathway along the front in which nutrients lead to …

Bathypelagic Fish Association With The Mid-Atlantic Ridge, Tracey Sutton, F. Uiblein, I. Byrkjedal, A. Dolgov, M. Heino, J. Horne, N. King, Tone Falkenhaug, O. R. Godo, Odd Aksel Bergstad

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The bathypelagic zone, Earth’s largest living space, is essentially boundless in three dimensions for most of its extent, structured only by fluid features (e.g., salinity, temperature) of the seawater itself. However, near certain topographic features this zone intersects the seafloor. The mid-ocean ridge system is by far the largest of these features. Unlike the ecosystems of the continental margins, the mid-ocean ridge systems do not receive terrigenous nutrient inputs. Thus, the deep-water fauna associated with mid-ocean ridges ultimately depend on the generally limited local surface production. Despite this limited surface production, there is evidence that near-ridge demersal fish biomass is …

Integrated Coastal Management Issues And The Choices We Make, Center For Coastal Resources Management, Virginia Institute Of Marine Science

Reports

Rivers & Coast is a periodic publication of the Center for Coastal Resources Management, Virginia Institute of Marine Science. The goal of Rivers & Coast is to keep readers well informed of current scientific understanding behind key environmental issues related to watershed rivers and coastal ecosystems of the Chesapeake Bay.

The Crest, Summer 2006, Virginia Institute Of Marine Science

Reports

Table of Contents:

• Menhaden research
• Sea Grant renews effort to manage cownose rays
• Food-web study aids management of biodiversity
• Horodysky throws light on fish vision Research reveals lobsters avoid sick neighbors
• New faculty brushes aside disciplinary boundaries
• Research helps created wetlands come to life
• Miselis chosen as Foster Scholar
• Wetlands workshop promotes informed management
• VIMS bestows 2005 Awards
• Duffy and Lipcius win Leopold Fellowships
• Alum coaches high school team to national recognition
• VIMS alumna receives prestigious national award
• Lucy wins Hutchinson conservation award
• Newsbriefs

Survival Of White Marlin (Tetrapturus Albidus) Released From Commercial Pelagic Longline Gear In The Western North Atlantic, David W. Kerstetter, John E. Graves

Marine & Environmental Sciences Faculty Articles

To estimate postrelease survival of white marlin (Tetrapturus albidus) caught incidentally in regular commercial pelagic longline fishing operations targeting swordfish and tunas, short-duration popup satellite archival tags (PSATs) were deployed on captured animals for periods of 5-43 days. Twenty (71.4%) of 28 tags transmitted data at the preprogrammed time, including one tag that separated from the fish shortly after release and was omitted from subsequent analyses. Transmitted data from 17 of 19 tags were consistent with survival of those animals for the duration of the tag deployment. Postrelease survival estimates ranged from 63.0% (assuming all nontransmitting tags were …

Substituting Otoliths For Chemical Analyses: Does Sagitta = Lapillus?, Nathan G. Smith, Cynthia M. Jones

OES Faculty Publications

Chemical analysis of fish otoliths has become an important technique in fisheries science with widespread applications. Most research up to this point has focused predominantly on sagittal otoliths, but the underlying assumptions may also apply to lapilli. The goal of this study was to determine whether lapilli and sagittae have the same otolith chemistry and whether one can be substituted for the other for solution-based chemical analysis in wild-captured fish. We compared the stable isotope chemistry (δ13C and δ18O) of paired sagittae and lapilli of juvenile spotted seatrout Cynoscion nebulosus collected from Chesapeake Bay seagrass beds in 2002. …

The Influence Of High Temperature And Two Hurricanes On The Success Of Late Season Loggerhead Nests In Broward County, Florida, In 2005, Stefanie Ouellette, Curtis M. Burney

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The success of loggerhead nests, defined as the percentage of the eggs per nest resulting in live released hatchlings, declined to unusually low levels during the latter part of the 2005 season. The mean successes were 81.1, 61.1, 32.8 and 13.4 percent for nests deposited in May, June, July and August, respectively. Many eggs from the August nests appeared to be unusually dried. There was a significant inverse relationship (P < .0001) between the daily air temperature anomaly on the day of nest deposition and the average daily success rate of loggerhead nests in 2005. The daily temperature anomaly is the deviation of the average air temperature each day from the daily climatological average values. There was also a highly significant inverse relationship between maximum daily air temperature and nest success rate in 2005. These relationships were not found in the previous two years. The actual average temperature during August in 2005 was 29.7°C, compared to 28.9 and 29.2°C in 2004 and 2003, respectively. The 2005 average was statistically different from the other two years (one way ANOVA, P < .001) and also from the climatological average temperature of 28.6°C. Mean daily success rates were less than 50 percent for nests deposited during the 50 days preceding the impact of Hurricane Katrina on August 25. Nests deposited in the first two weeks of August were also impacted by Hurricane Rita. Mean daily success rates were less than 10 percent on 7 days during this period.

Southeast Florida Coral Reef Evaluation And Monitoring Project 2005 Year 3 Final Report, Jennifer Wheaton, Carl Beaver, Walter Jaap, Michael Callahan, Selena Kupfner, Shannon Wade, David S. Gilliam, B. D. Ettinger, Daniel P. Fahy, Shaun M. Gill, Lindsey Habakuk Klink, Jamie A. Monty, M. A. Philips, Lauren F. Shuman, Nicole R. Stephens, Brian K. Walker, Joanna C. Walczak, Richard E. Dodge, Tim Mcintosh, Steven Blair, Kenneth Banks, Louis E. Fisher, David Stout, Joe Ligas, Janet Phipps

Marine & Environmental Sciences Faculty Reports

No abstract provided.

A Fish Habitat Classification Model For The Upper And Middle Sections Of The Bay Of Quinte, Lake Ontario, C. K. Minns, Andrea Bernard, C. N. Bakelaar, M. Ewaschuk

Marine & Environmental Sciences Faculty Reports

A fish habitat classification model was developed and applied to the upper and middle sections of the Bay of Quinte, Lake Ontario. Available habitat inventories were assembled in a GIS database, bringing bathymetric, shoreline, substrate, and vegetation data together in a series of layers. The classification model was developed in four steps. In the first step, the Defensible Methods (DM) model developed by Minns et al. (2000) was used to estimate suitability values in all habitat patches for a set of nine fish groups each with three life stages. The fish groups were formed from the assemblage of fish species …

Hydrodynamic Mediation Of Density-Dependent Growth And Adult-Juvenile Interactions Of A Spionid Polychaete, Brent T. Hentschel, Amy A. Larson

Environmental Science and Management Faculty Publications and Presentations

Abstract We performed an experiment to test the effects of adult density on the growth rates of juvenile Polydora cornuta. Our experiment was performed in three identical counter-rotating annular flumes, each set to one of three different flow speeds for a period of 3 d (U 5mm = 3, 6, or 12 cm s^-1 , where U_5mm = velocity measured 5 mm above bottom). We implanted replicate vials containing a premeasured juvenile P. cornuta and either 0, 2, or 5 adults into a 2-cm layer of sediment in the flume. The relative growth rates of the juveniles …

Recommended Management Arrangements For The West Coast Commercial 'Wetline' Fishery. A Report To The Minister For Fisheries., West Coast And Gascoyne Management Planning Panel.

Fisheries management papers

No abstract provided.

Recommended Access And Allocation Criteria For The West Coast And Gascoyne Commercial 'Wetline' Fisheries. A Report To The Ministry Of Fisheries., The Commercial Access Panel.

Fisheries management papers

The CAP’s primary responsibility was to develop criteria for access and allocation within the context of the management framework developed by the MPP. It is therefore important that this management paper is read in conjunction with the papers prepared by the MPP that outline the recommended management arrangements for the Gascoyne (Fisheries Management Paper No. 205) and the West Coast (Fisheries Management Paper No. 206) regions.

Assessment Of Western Rock Lobster Strategic Management Options. A Bio-Economic Evaluation Of Management Options For The West Coast Rock Lobster Fishery. Vol. 2, Economic Research Associates Pty Ltd

Fisheries management papers

Economic Research Associates (ERA) was commissioned to evaluate the relative ‘socio-economic’ benefits of alternative management Scenarios for the Western Rock Lobster Managed Fishery. This study is intended as input into industry’s consideration of the future management policy direction for the fishery.

Partners In Natural Resource Management : The Virginia Institute Of Marine Science And The Commonwealth Of Virginia, Virginia Institute Of Marine Science

Miscellaneous

Produced by the Office of Research and Advisory Services, this publication describes the Institute's duties as outlined in the Code of Virginia (2006) and the advisory services and natural resources management roles in the Commonwealth of Virginia.

Sponges Of Navassa, Janie L. Wulff, Timothy D. Swain

Marine & Environmental Sciences Faculty Reports

This photographic guide was compiled from data collected during the 2004 NOAA survey of the coral reefs of Navassa and does not represent a comprehensive list of all Porifera in Navassa. Specifically missing are taxa that inhabit caves, overhangs, vertical walls; species that live in the interstices of the reef framework; and species found at depths greater than 50 meters. Specimens were identified by Janie Wulff and Timothy Swain of Florida State University using a combination of digital photography, field observations, and microscopic examination of siliceous spicules. Genera are organized into higher taxa according to Systema Porifera, Hooper & van …

An Experimental Histopathological Rating Scale Of Sedimentation Stress In The Caribbean Coral Montastraea Cavernosa, Bernardo Vargas-Ángel, Bernhard Riegl, David S. Gilliam, Richard E. Dodge

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Colonies of Montastraea cavernosa were exposed to daily applications of approx. 200–225 mg cm– 2 sediments, during a four-week period, in order to investigate coral responses to increased sedimentation. Effects were assessed based on the histopathological condition of specimen tissues. Mild stress responses were noted as early as week one, including tissue swelling and polyp retraction, as well as changes in size and appearance of mucous secretory cells. As stress progressed, further inflammation of the mucous secretory cells was observed. Severe effects were observed in weeks 3 and 4, including atrophy of the outer epidermis, increased granularity and debris in …

Visual_Hea: Habitat Equivalency Analysis Software To Calculate Compensatory Restoration Following Natural Resource Injury, Kevin E. Kohler, Richard E. Dodge

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Habitat Equivalency Analysis (HEA) is a means to determine the amount of compensatory restoration required to provide services that are equivalent to the interim loss of natural resource services following an injury. HEA includes a discounting procedure to account for asset valuation in that the total asset value is equal to the discounted value of the future stream of all services from the natural resource or the compensatory resource. Discounting is used to include the relative valuation of loss and gain of ecological services of the resources over time. Visual_HEA is a computer program developed to calculate the amount of …

Growth And Survivorship Of Scleractinian Coral Transplants And The Effectiveness Of Plugging Core Holes In Transplant Donor Colonies, Elizabeth Glynn Fahy, Richard E. Dodge, Daniel P. Fahy, T. Patrick Quinn, David S. Gilliam, Richard E. Spieler

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Replicate scleractinian coral transplants were obtained from the species Meandrina meandrites and Montastrea cavernosa on a natural reef, off Dania Beach, Florida, using a hydraulic drill fitted with a 4 in. (~10 cm) core barrel. The transplants were fixed to Reef Ball™ substrates using an adhesive marine epoxy. Drill holes in the donor corals (core holes) were filled with concrete plugs. Control corals, of comparable size to both donor colonies and transplant corals, were monitored for comparison. Transplant corals, donor corals, and controls on the natural reef were monitored for growth and survivorship. Core holes were monitored for tissue regrowth …

Spatial Patterns In Arabian Gulf Coral Assemblages (Jebel Ali, Dubai, U.A.E.) In Response To Temperature-Forcing, Bernhard Riegl, Samuel J. Purkis, Kevin E. Kohler, Richard E. Dodge

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

We evaluated spatial and temporal patterns using maps from Ikonos satellite imagery in combination with 8 years of line transects and photosquares and the HadISST1 sea-surface temperature data set to explain why coral assemblages in the southern Arabian Gulf (Dubai) are impoverished and mostly do not build framework reefs. Analysis of archive sea surface temperature (SST) data confirms that the area is subjected to recurrent temperature anomalies. Frequencies of anomalies might suggest at least a partial link to the El Niño Southern Oscillation possibly via the Indian Ocean Zonal Mode. The dominant driver of local temperature was oscillations in the …

Fractal Patterns Of Coral Communities: Evidence From Remote Sensing (Arabian Gulf, Dubai, U.A.E.), Samuel J. Purkis, Bernhard Riegl, Richard E. Dodge (Editor)

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

In this study, the spatial character of benthic communities is investigated in an Arabian Gulf shallow subtidal carbonate ramp setting, using IKONOS satellite imagery. The patchy distribution of three assemblages of live and dead corals on extensive (but also fragmented) hardground pavements was investigated using a variety of spatial statistics. It was found that the spatial expression of the benthic groups display characteristics that approximate to power-law distributions over several orders of magnitude to an extent that suggests fractal behaviour. Pronounced anisotropy was observed between the spatial patterns in the near-shore and off-shore region which is attributed to different mechanisms …

Implications Of Natural Variation Of Fish Assemblages To Coral Reef Management, Lance K. B. Jordan, Richard E. Spieler

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

In order to evaluate the impact of a planned beach renourishment project we obtained baseline data on hardbottom coral reef fish assemblages adjacent to the beach. During the summers of 2001 and 2003 we conducted 92 and 89 visual transect-counts, respectively, each 30x2x1m. Fish were recorded by species, abundance, and size class. Fish exhibited a 62.8% decrease in abundance between the 2001 and 2003 surveys. Juvenile Haemulon spp. (<5cm total length, TL) alone decreased 72.8% in abundance and, due to their predominance, primarily drove the decrease seen for total abundance. The second most abundant species Halichoeres bivittatus, also primarily juveniles (<5cm TL), contributed 8% of the total abundance and also showed a significant decrease between the 2001 and 2003 surveys. Even after removal of the two most abundant taxa, total abundance remained significantly lower the second survey year, suggesting the possibility of a community-wide decrease in abundance. However, the decrease between years was mainly due to a decrease in juveniles. When fish less than 5cm TL were removed from the dataset, no significant difference in abundance between years was detected. Species richness also declined significantly with fewer species noted in 2003 and eight fewer total species between years. Nonetheless, multivariate examination of assemblage structure did not indicate a difference between years. These results have important implications for determining potential anthropogenic change in fish assemblages (e.g. caused by beach renourishment).

Transport Of Antarctic Krill (Euphausia Superba) Across The Scotia Sea. Part Ii: Krill Growth And Survival, Bettina A. Fach, Eileen E. Hofmann, Eugene J. Murphy

CCPO Publications

A time-dependent, size-structured, physiologically based krill growth model was used in conjunction with a circulation model to test the hypothesis that Antarctic krill (Euphausia superba) populations at South Georgia are sustained by import of individuals from upstream regions. Surface phytoplankton concentrations along the simulated drifter trajectories were extracted from historical Coastal Zone Color Scanner (CZCS) measurements and sea ice biota concentrations were calculated from sea ice concentration and extent extracted along drifter trajectories from Special Sensor Microwave/ Imager measurements. As additional food sources, a time series of heterotrophic food was constructed from historical data, and time series of …