Physical Sciences and Mathematics Commons^™

Year Long Water Quality Analysis Of White Horn Brook, Kevin Dyer

Senior Honors Projects

KEVIN DYER (Marine Biology)

Year-long Analysis of the Water Quality of White Horn Brook

Sponsor: Thomas Boving (Geological Sciences)

Water is the foundation for all life on earth and is the most vital resource on this planet. Despite this, oceans and waterways all over the world are being polluted and exploited in ways detrimental to their fundamental hydrologic functions. For instance, excess nitrate levels can lead to eutrophication which gives rise to harmful algae blooms. Low pH can cause the breakdown of CaCO3 exoskeletons of organisms, such mollusks. High temperature variations are major stressors to living things and can cause …

Genome Sequencing Analysis Of Laboratory Isolate Of Francisella Noatunensis Subs. Orientalis, Joseph Paquette

Senior Honors Projects

Francisella noatunensis subs. orientalis is a known fish pathogen that has been most notably isolated from tilapia (Oreochromis niloticus) in Costa Rica. The genome of this Francisella species pathogen has been sequenced using Next-Generation Sequencing and been made available for the scientific community. Dr. Kathryn Ramsey’s research laboratory in the Department of Cell and Molecular Biology at the University of Rhode Island works with several Francisella species pathogens and is interested in identifying the differences, if any, between the known genome sequence of Francisella noatunensis and that of a laboratory isolate of the same species. With the use …

Do Metabolic Networks Follow A Power Law? A Psamm Analysis, Ryan Geib, Lubos Thoma, Ying Zhang

Senior Honors Projects

Inspired by the landmark paper “Emergence of Scaling in Random Networks” by Barabási and Albert, the field of network science has focused heavily on the power law distribution in recent years. This distribution has been used to model everything from the popularity of sites on the World Wide Web to the number of citations received on a scientific paper. The feature of this distribution is highlighted by the fact that many nodes (websites or papers) have few connections (internet links or citations) while few “hubs” are connected to many nodes. These properties lead to two very important observed effects: the …

You, Me And Life In The Sea Ocg 106g, Joanna Burkhardt

Library Impact Statements

No abstract provided.

Do Halogenated Natural Products Bioaccumulate In Narragansett Bay?, Christine Gardiner, Anna Robuck, Rainer Lohmann

Senior Honors Projects

In recent decades, a new family of chemical compounds has begun to garner research attention—halogenated natural products, or HNPs. These chemicals are produced by algae, bacteria, worms, and sponges, and many are structurally similar to harmful manmade compounds, such as polychlorinated diphenyls (PCBs), or brominated flame retardants (PBDEs), which are known to cause cancer, reproduction issues, endocrine disruption, and death. While HNPs are produced naturally, they are still considered pollutants because of their bioaccumulative behavior and apparent toxicity.

Currently, there is limited research on their presence and effects, with a few studies from Europe and the Pacific highlighting their importance …

Science And Pseudoscience Cmb 265g, Michael Cerbo

Library Impact Statements

No abstract provided.

2016-01-A3dsrinp-Csc-Sta-Cmb-522-Bps-542, Raymond Pulver, Neal Buxton, Xiaodong Wang, John Lucci, Jean Yves Hervé, Lenore Martin

Bioinformatics Software Design Projects

Cholesterol is carried and transported through bloodstream by lipoproteins. There are two types of lipoproteins: low density lipoprotein, or LDL, and high density lipoprotein, or HDL. LDL cholesterol is considered “bad” cholesterol because it can form plaque and hard deposit leading to arteries clog and make them less flexible. Heart attack or stroke will happen if the hard deposit blocks a narrowed artery. HDL cholesterol helps to remove LDL from the artery back to the liver.

Traditionally, particle counts of LDL and HDL plays an important role to understanding and prediction of heart disease risk. But recently research suggested that …

Global Worming: A Quantitative Study About Greenhouse Gas Flux In Surface Soils Facilitated By The Anecic Earthworm, Lumbricus Terrestris, Under Rising Global Temperature, Rachel Briden Frei, Jose A. Amador

Senior Honors Projects

Climate change is the long-term alteration in the Earth’s average weather conditions believed to be driven by greenhouse gases (GHG): carbon dioxide (CO₂), methane (CH₄) and nitrous oxide (N₂O). These alterations are expected to cause more extreme weather events, gradually warmer global temperatures and greater amounts of precipitation. Roughly 20% of the Earth’s CO₂, one-third of CH₄ and two-thirds of N₂O emissions, originate from soils, and earthworms are known to accelerate GHG. As climate change proceeds, there is expected to be an increase in global temperature of 2-6ºC. Temperature …

Effects Of Environmental Factors On The Abundance Of Blacklegged Ticks, Jasmine L. Miller, Roger A. Lebrun, Howard S. Ginsberg

Senior Honors Projects

The nymphal stage of the blacklegged tick, Ixodes scapularis, is the major vector of Lyme disease, the most common vector-borne disease in North America. Tick abundance has generally been estimated using either flag/drag samples or samples from hosts. However, the biases of these sampling methods have not been adequately studied. We compared samples using both methods from sites in Massachusetts and Wisconsin. Tick abundance was compared with variables related to weather (temperature, relative humidity, and tick adverse moisture events), vegetation (canopy cover, tree density, shrub density, ground vegetation, and leaf litter cover), and host abundance (mice, small mammals, medium …

Manipulating The Mass Distribution Of A Golf Putter, Paul J. Hessler Jr.

Senior Honors Projects

Putting may appear to be the easiest but is actually the most technically challenging part of the game of golf. The ideal putting stroke will remain parallel to its desired trajectory both in the reverse and forward direction when the putter head is within six inches of the ball. Deviation from this concept will cause a cut or sidespin on the ball that will affect the path the ball will travel.

Club design plays a large part in how well a player will be able to achieve a straight back and straight through club head path near impact; specifically the …

Macroinvertebrate Assemblages And Dynamic Soil Properties: Influence Of Dredging, Bianca N. Ross

Senior Honors Projects

Bianca Peixoto

Senior Honors Project

Macroinvertebrate Assemblages and Dynamic Soil Properties: Influence of Dredging: Abstract

The habitat characterization of subaqueous soils is important for inventorying natural resources and monitoring changes in ecosystem processes. This project aimed to characterize benthic communities within coastal ponds of southern Rhode Island, and develop an understanding of how these communities change due to habitat alterations. I explored the distribution of benthic biology among a range of estuarine subaqueous soils and the effect of anthropogenic disturbance (dredging) on these distributions. The term “benthic” refers to the collection of organisms living in the substrate at the interface …

Aerobic Degradation Of Α-, Β-, Γ-Hexachlorocyclohexane By Narragansett Bay Bacterioplankton, Ian M. Rambo

Senior Honors Projects

Hexachlorocyclohexanes (HCHs) are a family of chlorinated organic compounds that were previously used as agricultural insecticides. HCHs are recognized as persistent organic pollutants due to their toxicity, recalcitrant properties, and tendency to bioaccumulate in food webs. Although HCH was first synthesized in 1825, its use was not widespread until the discovery of the insecticidal activity of the γ-HCH isomer in 1942. γ-HCH and its toxic waste isomers α-HCH and β-HCH were banned from production and use by the United Nations in 2009, yet these chemicals still present environmental problems due to their persistence in soils and surface waters. HCHs continue …

The “Green Eating” Project: A Pilot Intervention To Promote Sustainable And Healthy Eating In College Students, Kelleigh E. Eastman

Senior Honors Projects

The “Green Eating” Project: A Pilot Intervention to Promote Sustainable and Healthy Eating in College Students

Kelleigh Eastman

Sponsor: Geoffrey Greene, Nutrition and Dietetics

A topic of interest that is growing in the general population is the idea of being sustainable, or “green”, and there is a rising awareness in sustainable practices involving food and the environment. Some of the “green” eating behaviors identified through my research included eating a plant-based (i.e. vegetarian or semi-vegetarian) diet, eating locally grown foods, eating organically grown foods, and eating foods that are labeled fair-trade. Frequently, these “green” eating behaviors are healthful eating behaviors …

Modeling Habitat Associations For The Common Loon (Gavia Immer) At Multiple Scales In Northeastern North America, Anne Kuhn, Jane Copeland, John Cooley, Harry Vogel, Kate Taylor, Diane Nacci, Peter V. August

Natural Resources Science Faculty Publications

Common Loon (Gavia immer) is considered an emblematic and ecologically important example of aquatic-dependent wildlife in North America. The northern breeding range of Common Loon has contracted over the last century as a result of habitat degradation from human disturbance and lakeshore development. We focused on the state of New Hampshire, USA, where a long-term monitoring program conducted by the Loon Preservation Committee has been collecting biological data on Common Loon since 1976. The Common Loon population in New Hampshire is distributed throughout the state across a wide range of lake-specific habitats, water quality conditions, and levels of …

Spatial And Temporal Variation In Otolith Chemistry For Tautog (Tautoga Onitis) In Narragansett Bay And Rhode Island Coastal Ponds, Ivan Mateo, Edward G. Durbin, David A. Bengtson, Richard Kingsley, Peter K. Swart, Daisy Durant

Fisheries, Animal and Veterinary Sciences Faculty Publications

The elemental composition of otoliths may provide valuable information for establishing connectivity between fish nursery grounds and adult fish populations. Concentrations of Rb, Mg, Ca, Mn, Sr, Na, K, Sr, Pb, and Ba were determined by using solution-based inductively coupled plasma mass spectrometry in otoliths of young-of-the year tautog (Tautoga onitis) captured in nursery areas along the Rhode Island coast during two consecutive years. Stable oxygen (δ¹⁸O) and carbon (δ¹³C) isotopic ratios in young-of-the year otoliths were also analyzed with isotope ratio mass spectrometry. Chemical signatures differed significantly among the distinct nurseries within Narragansett …

Traditional Natural Resource Use And Development In Northeast Thailand, Christie Moulton

Senior Honors Projects

This paper explores the effects of development projects on traditional natural resource use in three communities in Northeast Thailand, a region known as Isan. I interviewed villagers in each community and asked them to describe their environmental perceptions, management practices and livelihood strategies. Participants described several subsistence livelihoods that have traditionally been present in Isan. These include rice farming, fishing, community forestry, and wetland use. Residents from the three communities all described various cultural activities, knowledge systems, and religious ceremonies that are closely tied to their local resources. Raising silk worms, making clay pots, and performing rituals for a spirit …

Time Post-Hatch Caloric Value Of Artemia Salina, Jessie M. Sanders

Senior Honors Projects

In aquatic animal collections, such as those in the collection of Mystic Aquarium & Institute for Exploration’s Fish & Invertebrate department, live food is an essential part of the diet of animals that are on display, used in education, and kept in reserve for exhibits. For Mystic Aquarium’s Fish & Invertebrate department, newly hatched Artemia salina, or brine shrimp, are fed to an assortment of fishes and invertebrates, including soft corals and jellyfish. Hatch brine is an important source of fatty acids, which are essential for proper growth and development. Hatch brine starts encapsulated in a cyst form and are …

Survival Of Eastern Oysters Crassostrea Virginica From Three Lines Following Experimental Challenge With Bacterial Pathogens, Javier Gomez-Leon, Luisa Villamil, Scott A. Salger, Rachel Sallum, Antonio Remacha-Trivino, Dale F. Leavitt, Marta Gomez-Chiarri

Fisheries, Animal and Veterinary Sciences Faculty Publications

Shellfish production is often affected by bacterial pathogens that cause high losses in hatcheries and nurseries. We evaluated the relative survival of larvae and juveniles of 3 Crassostrea virginica oyster lines: (1) GHP, a Rhode Island line; (2) NEHY, a line resistant to dermo and multinucleated sphere X diseases; and (3) FLOWERS, a line resistant to Roseovarius oyster disease, experimental challenge with Vibrio spp. isolates RE22 and RE101, causative agents of bacillary necrosis in Pacific oyster larvae, and the type strain of Roseovarius crassostreae, causative agent of Roseovarius oyster disease. All of the isolates were able to induce significant …

Mechanics Of Suction Generation During Feeding In Little Skates, Danielle Duquette

Senior Honors Projects

Feeding mechanisms of aquatic vertebrates has been extensively studied in the past, while that of elasmobranchs remains limited. Skates and rays are believed to have evolved from a shark ancestor, thus they represent the most derived group. All skates are dorsoventrally compressed, have a unique jaw suspension type and head skeleton and live in benthic environments. It is unknown whether these derived features of skates have altered the ancestral shark feeding mechanism. Comparing feeding mechanisms in skates and sharks may shed light on morphological transformations that have arisen after the evolutionary split of these two groups. In this study prey …

Importance Of Early Successional Forest For Wildlife In Southern New England, Amy Wynia

Senior Honors Projects

Many bird species that require early successional forest are declining in the Northeast U.S. because such habitat is relatively rare and when they inhabit the more common mature forests or suburban areas they are less successful. Early successional forest is maintained by regular disturbance (wind, fire, clear-cutting, and flooding) which has been happening less frequently during the past 50 years. Bird species that have declined during this time and which inhabit early successional forest include ruffed grouse (Bonasa umbellus), blue jay (Cyanocitta cristata), chestnut-sided warbler (Dendroica pensylvanica), gray catbird (Dumetella carolinensis), field sparrow (Spizella pusilla), golden-winged warbler (Vermivora chrysoptera), eastern …

A Comparison Of The Imapct Of Environmental Stressors On Blood Parameters Of Captive Harbor Seals (Phoca Vitulina), Maura Allard

Senior Honors Projects

Little research has been established in determining blood chemistry values for harbor seals in Alaska. It has been suggested that various environmental factors can influence the blood chemistry values due to temperature, day length, precipitation, constraint and diet amongst other variables. Currently there are no guidelines for veterinarians and rehabilitators to refer to when analyzing blood chemistry values for sick animals. The hope for this research is that it will aide in establishing guidelines for specific circumstances due to environmental stressors. It is hoped that in the future, this study will be used to create values for which veterinarians can …

The Sedimentary Environment Below Earth’S Polar Ice Cap As A Microbial Habitat, David C. Smith, Stephanie Forschner-Dancause, David C. Rowley, Steven D'Hondt

Graduate School of Oceanography Faculty Publications

University of Rhode Island faculty participated in drilling of the polar ice cap to study microbial diversity and adaptation to subsurface life under conditions that may mimic extraterrestrial subsurface conditions.

Infectious Necrotizing Enteritis And Mortality Caused By Vibrio Carachariae In Summer Flounder Paralichthys Dentatus During Intensive Culture, Bruno Soffientino, Todd Gwaltney, David R. Nelson, Jennifer L. Specker, Michael Mauel, Marta Gomez-Chiarri

Fisheries, Animal and Veterinary Sciences Faculty Publications

An epizootic causing mortality among cultured summer flounder Paralichthys dentatus occurred in summer of 1998 at a land-based facility on Narragansett Bay, Rhode Island, USA. The disease, flounder infectious necrotizing enteritis (FINE), was characterized by reddening around the anal area, distended abdomens filled with opaque serosanguineous fluid, enteritis and necrosis of the posterior intestine. In extreme cases of the disease, the posterior intestine was detached from the anus and was observed coming out the vent. The intestine of individuals that recovered from the dsease ended in a blind-sac; the abdomens of these fish were distended, due to food and water …

Breeding Ecology And Behavior Of The Hawaiian Hawk, Curtis R. Griffin, Peter W. C. Paton, Thomas S. Baskett

Natural Resources Science Faculty Publications

We studied the ecology of the endangered Hawaiian Hawk (Buteo solitarius) on the island of Hawaii for three breeding seasons. Their breeding strategy is a prime example of a K-selected species characteristic of many birds in tropical environments: clutch size was one and brood-rearing was among the longest reported for any diurnal raptor. Twenty-eight nests were found in a variety of native and exotic habitats. Incubation lasted 38 days, nestlings fledged after 59-63 days, and parents cared for fledglings for an average of 30.2 weeks, which was 2.5 to 10 times longer than similar-size temperate zone raptors. Males …

Factors Affecting Interannual Movements Of Snowy Plovers, Peter W. C. Paton, Thomas C. Edwards Jr.

Natural Resources Science Faculty Publications

We studied the interannual movements of 361 individually color-banded adult Snowy Plovers (Charadrius alexandrinus nivosus) at Great Salt Lake, Utah from 1990 to 1993. In northern Utah, Snowy Plovers nested in a dynamic environment; suitable breeding habitat declined by 50% at two study areas in four years. Male Snowy Plovers were more site faithful than females; 40% of males exhibited fidelity compared with 26% of females (P < 0.01). However, as the amount of available suitable nesting habitat declined, male site fidelity diminished, whereas female fidelity remained relatively constant. We found strong evidence that female site fidelity was affected by nesting success in the previous year. Females that nested unsuccessfully were less likely than successful females to exhibit site fidelity the following year; males did not exhibit this nest-success bias. In addition, unsuccessful females breeding at sites with high densities of nests tended to disperse the following year, whereas male site fidelity did not appear to be affected by either a study site's overall nesting success the previous year or a study site's nest density the previous year. Female avoidance of areas with high densities of nests may be an antipredator strategy. Snowy Plovers in northern Utah have biparental incubation duties, but only males care for broods. Familiarity with brood-rearing areas was one plausible explanation for male-biased fidelity. However, we could not eliminate an alternative hypothesis that both focal study sites represented scarce breeding areas due to the presence of freshwater, and male Snowy Plovers preferred to use the same areas rather than disperse. We propose that more landscape-level studies are needed to address questions concerning local and regional movement patterns.

Differences In Wintering Areas Of Snowy Plovers From Inland Breeding Sites In Western North America, Gary W. Page, Mark A. Stern, Peter W. C. Paton

Natural Resources Science Faculty Publications

No abstract provided.

Water: Its Inluence On Health And Disease, John Wilby

Student and Lippitt Prize essays

An insight into the health effects of water and diseases it may carry; provides alternative ideas and solutions for sanitizing.