Physical Sciences and Mathematics Commons^™

Environmental Dna Identifies Coastal Plant Community Shift 1,000 Years Ago In Torrens Island, South Australia, Nicole R. Foster, Alice R. Jones, Oscar Serrano, Anna Lafratta, Paul S. Lavery, Kor-Jent Van Dijk, Ed Biffin, Bronwyn M. Gillanders, Jennifer Young, Pere Masque, Patricia S. Gadd, Geraldine E. Jacobsen, Atun Zawadzki, Andria Greene, Michelle Waycott

Research outputs 2022 to 2026

Anthropogenic activities are causing detrimental changes to coastal plants– namely seagrass, mangrove, and tidal marshes. Looking beyond recent times to past vegetation dynamics is critical to assess the response and resilience of an environment to change. Here, we develop a high-resolution multi-proxy approach, providing a new evidence base to decipher long-term change in coastal plant communities. Combining targeted environmental DNA analysis with chemical analysis of soils, we reconstructed 4,000 years of change at a temperate wetland on Torrens Island South Australia and identified an ecosystem shift that occurred ~ 1000 years ago. What was once a subtidal seagrass system shifted …

The Reveal: A Technical Study And Conservation Treatment Of An Overpaint Portrait, Camille Ferrer

Art Conservation Master's Projects

A severely damaged 19th-century oil painting depicting a portrait of a woman was treated at Patricia H. and E. Garman Art Conservation Department. A typed letter provided by the owner mentioned that it has been previously restored yet returned with unsatisfactory results. After further examination, the painting appeared to have been previously treated multiple times by different people. There was overpaint distinctly present on the face and later discovered to be present overall. The full state of condition of the painting was initially unknown due to the sum of the surface being overpainted. However, there were evidence of paint loss …

Using Bayesian Multispecies Models To Evaluate Fish And Invertebrate Detection Probability And Distribution In The Hypersaline Bahia Grande Tidal Basin, Roy M. Ulibarri, Catherine M. Eckert, David Hicks, David Montagne, Brandon Jones, David R. Stewart

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Objective

In 2000, the Laguna Atascosa National Wildlife Refuge acquired the Bahia Grande (Texas) management unit, a space that had lain barren and arid for 70 years. A large cooperative partnership launched a restoration project to replenish the basin and recover its original tidal hydrology. In 2005, the construction of a pilot channel successfully restored water throughout the basin, and plans to eventually widen the channel were developed. Our study aims to evaluate an estuarine habitat restoration by assessing ecological drivers and the impacts on species diversity.

Methods

We evaluated species richness, detection/occupancy rates, and species–habitat relationships, and we estimated …

Plas 439: Organic Farming And Food Systems Faculty-Led Inquiry Into Reflective Scholarly Teaching Benchmark Portfolio, Christian Stephenson

UNL Faculty Course Portfolios

Organic Farming and Food Systems is a senior and graduate level course for students in the Department of Agronomy and Horticulture. This course was previously offered but has been significantly modified as I have taken on responsibility for the course. Goals for the course include student comprehension of the methods of organic and regenerative farming and the impacts of those methods on economic, environmental, and social sustainability. An additional goal is to build student competency in the evaluation of primary, secondary, and tertiary information resources and critical thinking surrounding issues in food production. Assessment for the course was through diverse …

Internet-Based Data Platforms Re-Define The Distributions Of Some Large Crabronid Wasps In Arkansas (Hymenoptera: Crabronidae), David E. Bowles

Insecta Mundi

The geographic distributions of three large wasps, Sphecius speciosus (Drury), Stictia carolina Fabricius, and Stizus brevipennis Walsh (Hymenoptera: Crabronidae), occurring in Arkansas are defined using museum specimens and three internet-based data platforms. The internet-based data platforms generally provided more county location records than museum records. Using data from internet sources for easily identified species can better serve to illustrate the known distributions for some species thus making for a powerful tool elucidating distributional patterns and conservation planning.

ZooBank registration. urn:lsid:zoobank.org:pub:DCAE9192-1765-40CD-952B-0A094F413991

Morphometric Analysis And Taxonomic Re-Evaluation Of Pepsis Cerberus Lucas And P. Elegans Lepeletier (Hymenoptera: Pompilidae: Pepsinae: Pepsini), Frank E. Kurczewski, Akira Shimizu, Diane H. Kiernan

Insecta Mundi

Hurd (1952) separated Pepsis cerberus Lucas from P. elegans Lepeletier (Hymenoptera: Pompilidae: Pepsinae: Pepsini) based on external morphology and biogeography. Vardy (2005) synonymized the familiar and historically well-documented P. cerberus and P. elegans, combining these Nearctic taxa with several Neotropical variants in an extremely broad definition of P. menechma Lepeletier. In doing so, Vardy (2005) breached the principle of nomenclatural stability. He ignored the prevailing usage and clearly violated articles 23.2, 23.3 and 23.9.1.2 of the ICZN (1999). Morphological differences, ecological divergence, and narrow sympatric geographic distribution of P. cerberus and P. elegans …

Biotechnology For Sustainable Materials: Innovating Today For A Greener Tomorrow, Shashi Kant Bhatia, Saurabh Bhatia, Maria Eugenia Inda-Webb, Konstantina Kourmentza, Tae Seok Moon, Vijai Singh, Vishal Ahuja, Jingbo Li, Sanjeet Mehariya, Jikai Zhao

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

No abstract provided.

Operation Shark: Addressing The Negative Portrayal Of Sharks In Media, Michael R. O'Shea

Masters Theses

Sharks are some of the most well adapted and effective animals in the animal kingdom. Unfortunately, they are also some of the most feared. For many people the word shark evokes images of vicious attacks like those seen in movies such as Jaws. Sharks have also been negatively portrayed in the media. This negative portrayal of sharks has led to misconceptions about sharks that have damaged their populations. Efforts have been made to raise awareness and fight common misconceptions of sharks. However, many people still hold on to the incorrect ideas they have about sharks. This thesis will examine the …

Ankle Mobility And Balance In A Healthy College-Aged Population: A Correlational Study, Anna G. Johnson, Madelyn M. Roiger, Elisa M. Stewart

Human Kinetics & Applied Health Sciences Student Works

A review of current literature shows a relationship between ankle mobility and balance in an older population, with limited evidence in younger, healthy populations. To bridge this gap, this study aims to explore this relationship in a healthy, college-aged population. Maintaining upright balance is an integrated effort by the vestibular, somatosensory, and visual systems. Regaining a loss of balance happens with three strategies: an ankle strategy for small perturbations, a hip strategy for moderate perturbations, and a stepping strategy for the largest loss to regain a new base of support. Taking these sequential responses into account, the investigators specifically looked …

Fireflies At Rpa Natural Area Final Report, Olivia H. Bush, Sydney M. Shea, Sofia J. Gordon, Nick S. Wiebke

Final Reports in ENST 411: Environmental Community Projects

Our group worked alongside community partners Shaunna Barnhart and Jim Dunn during the Spring 2024 semester to assist with their annual event Fireflies at RPA Natural Area. RPA Natural Area is a local park in South Williamsport, Pennsylvania that was recently acquired by Southside Recreational Authority. Since taking over the park, the organization has begun hosting an event each July to educate the general public about firefly biology and conservation by showing a film and guiding attendees through a firefly tour through the park. Our goals for this project included creating physical educational materials to be used at the park …

Heavy Metals In Afforested Mangrove Sediment From The World's Largest Delta: Distributional Mapping, Contamination Status, Risk Assessment And Source Tracing, Md Saifur Rahman, Moshiur Rahman, Yeasmin N Jolly, Md Kamal Hossain, Sanjida Afrin Semme, Bilal Ahamad Paray, Takaomi Arai, Jimmy Yu, M Belal Hossain

Journal Articles

This study aims to assess seasonal and spatial variations, contamination status, ecological risks, and metal sources (Ni, Pb, Cr, Cu, Mn, and Zn) in human-afforested mangrove sediments in a deltaic region. Five sampling locations were sampled during dry and wet seasons. Heavy metal concentrations followed the order: Mn > Zn > Ni > Cr > Cu > Pb. Metal loads, except Cu and Pb, were higher during the dry season, aligning with national and international recommendations. Sediment quality guidelines, contamination factor, geoaccumulation index, enrichment factors, and pollution load index indicated uncontaminated sediment in both seasons. Potential ecological risk assessment showed low risk conditions in all …

Development Of An Enhanced Sampling Workflow To Accelerate Molecular Docking With Sparse Biophysical Information, Zachary Stichter

Masters Theses & Specialist Projects

Rapid docking of flexible biological macromolecules remains a significant open challenge in protein structure determination. While rigid docking is relatively simple with toolkits such as TagDock, a key obstacle to rapid flexible docking is the complexity and roughness of the free energy surface associated with protein conformational motion (often termed the many-minima problem), meaning conventional molecular dynamics methods do not effectively sample protein conformations near the interaction complex in accessible timescales. Methods such as metadynamics and replica exchange molecular dynamics exist to ameliorate this obstacle, yet these methods use nonphysical biases or random swaps to enhance sampling. In contrast, high …

The Effect Of Vision On Lower Quarter Balance During Y-Balance Test Testing In College Students, Nathan Smith, Katelyn Mehr

Human Kinetics & Applied Health Sciences Student Works

Purpose: In order to maintain balance and stability, the body relies on the integration of information from the visual, vestibular, and proprioceptive systems. If an individual has an impairment or weakness in one or more systems, their ability to maintain balance may be impaired. Both postural stability and vision contribute to one’s ability to maintain balance in functions of everyday life. The Y-Balance Test (YBT) is a dynamic balance assessment. This study focuses on the visual system and its relation to postural balance, specifically if altered visual states affect one’s ability to maintain balance during a YBT via the use …

Public Horticulture: Process And Design Of The Lincoln Botanical Garden, Brad Kindler

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Beginning in 2012, the local non-profit, The Lincoln Botanical Garden, began organizing the conceptual design and creation of a glass conservatory within a botanical garden in Lincoln, Nebraska. These proposed urban enhancements seek to fill a gap in garden amenities in the city by providing year-round access to public horticulture programming and education.

This project, Public Horticulture: Process and Design of the Lincoln Botanical Garden, documents these efforts and makes design recommendations for a themed Glacial Erratic Garden that could be constructed within the botanical garden.

Advisors: Ellen Paparozzi and Sam Wortman

Synthesis Of Gold Nanoparticles Via Pulsed Liquid Ablation For Use In The Photodynamic Therapy Of Bacteria, Justice Ben Yosef

Masters Theses & Specialist Projects

With the ever-increasing threat of antibiotic resistant bacteria, alternative treatment methods have been developed including photodynamic therapy (PDT). Within the PDT process, photosensitizers are used to generate reactive oxygen species (ROS) and facilitate the cell termination process. This work lays the conceptual foundation for the functionalization of the photosensitizer methylene blue (MB) with gold nanoparticles (AuNPs) and INF-55 as a potential inhibitor of the AcrAB-TolC efflux pump to enhance the effectivity of the PDT process.

AuNPs were synthesized using pulsed laser ablation in an aqueous citrate solution. Both nanosecond and picosecond pulse durations, as well as both 532 nm and …

Grey Relational Analysis And Canonical Correlation Analysis Of Air Pollution In Three Kentucky Counties, Sarah Hartman

Masters Theses & Specialist Projects

Air pollution is a crucial factor that affects both the environment and public health. Various methods are available for assessing air quality and pollution levels, such as regression models, principal component analysis, and factor analysis tools. However, some of these methods present issues in multicollinearity and the nature of collected data. It is important to recognize that air pollution data is often uncertain, incomplete, and contains limited valid data points. Weather conditions and economic activities are also factors that can affect air pollution. With growing communities in Kentucky (KY), it is essential to address these factors as the state has …

Next-Generation Crop Monitoring Technologies: Case Studies About Edge Image Processing For Crop Monitoring And Soil Water Property Modeling Via Above-Ground Sensors, Nipuna Chamara

Dissertations and Doctoral Documents from University of Nebraska-Lincoln, 2023–

Artificial Intelligence (AI) has advanced rapidly in the past two decades. Internet of Things (IoT) technology has advanced rapidly during the last decade. Merging these two technologies has immense potential in several industries, including agriculture.

We have identified several research gaps in utilizing IoT technology in agriculture. One problem was the digital divide between rural, unconnected, or limited connected areas and urban areas for utilizing images for decision-making, which has advanced with the growth of AI. Another area for improvement was the farmers' demotivation to use in-situ soil moisture sensors for irrigation decision-making due to inherited installation difficulties. As Nebraska …

Consequences Of The Megafauna Extinction: Changes In Food Web Networks On The Edwards Plateau Across The Pleistocene-Holocene Transition, Quentin A. Smith Jr.

School of Biological Sciences: Dissertations, Theses, and Student Research

We are experiencing biodiversity loss due to climate change and human impacts, which is not only harmful to the environment but can also alter the composition of communities and interactions among species. The late Pleistocene experienced a loss of large-bodied mammals which resulted in significant changes in community structure due to changes in body size, diet, and species associations. The impact of these changes on species interactions and community structure across the Pleistocene-Holocene transition remains poorly understood. Using a robust data set of species composition, stable isotopes, body size, and climate variables, we constructed and compared ecological networks of mammal …

Chm116 Principles Of Chemistry Ii Lecture Slides, Leah S. Cohen, Probal Banerjee

Open Educational Resources

This file contains the lecture slides that are used in CHM116, Principles of Chemistry II.

Year-Round Co2 Emissions From The Drawdown Area Of A Tropical Reservoir: Strong Seasonal And Spatial Variation, Ícaro Barbosa, José R. Paranaíba, Sebastian Sobek, Sarian Kosten, Rafael M. Almeida, Vitor Duque, Natália Mendonça, Nathan Barros, Raquel Mendonça

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Highlights

• Drawdown areas emitted 80% of reservoir CO2 with just 1/5 area.

• Emissions from reservoir shorelines near forests were greater than from areas near grassland.

• CO2 emissions increase with the distance from the water.

• Estimates of reservoir drawdown CO2 flux vary by ∼ 300 % across the seasons examined here.

• There was no discernible difference in CO2 emissions between day and night-time.

• A significant increase in CO2 fluxes was observed 30 min after a rewetting event.

Abstract

A growing body of literature points to drawdown areas as important sources of atmospheric CO2 within reservoirs. Yet seasonal and temporal patterns of …

Skimming Genomes For Systematics And Dna Barcodes Of Corals, Andrea M. Quattrini, Luke J. Mccartin, Erin E. Easton, Jeremy Horowitz, Herman H. Wirshing, Hailey Bowers, Kenneth Mitchell, María Del P. González-García, Makiri Sei, Catherine S. Mcfadden

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Numerous genomic methods developed over the past two decades have enabled the discovery and extraction of orthologous loci to help resolve phylogenetic relationships across various taxa and scales. Genome skimming (or low-coverage genome sequencing) is a promising method to not only extract high-copy loci but also 100s to 1000s of phylogenetically informative nuclear loci (e.g., ultraconserved elements [UCEs] and exons) from contemporary and museum samples. The subphylum Anthozoa, including important ecosystem engineers (e.g., stony corals, black corals, anemones, and octocorals) in the marine environment, is in critical need of phylogenetic resolution and thus might benefit from a genome-skimming approach. We …

Agriculture 4.0 And Beyond: Evaluating Cyber Threat Intelligence Sources And Techniques In Smart Farming Ecosystems, Hang T. Bui, Hamed Aboutorab, Arash Mahboubi, Yansong Gao, Nazatul H. Sultan, Aufeef Chauhan, Mohammad Z. Parvez, Michael Bewong, Rafiqul Islam, Zahid Islam, Seyit A. Camtepe, Praveen Gauravaram, Dineshkumar Singh, M. A. Babar, Shihao Yan

Research outputs 2022 to 2026

The digitisation of agriculture, integral to Agriculture 4.0, has brought significant benefits while simultaneously escalating cybersecurity risks. With the rapid adoption of smart farming technologies and infrastructure, the agricultural sector has become an attractive target for cyberattacks. This paper presents a systematic literature review that assesses the applicability of existing cyber threat intelligence (CTI) techniques within smart farming infrastructures (SFIs). We develop a comprehensive taxonomy of CTI techniques and sources, specifically tailored to the SFI context, addressing the unique cyber threat challenges in this domain. A crucial finding of our review is the identified need for a virtual Chief Information …

Influence Of The Atlantic Inflow On Trace Metal Enrichments In Sediments And Particulate Matter Of The Nw Alboran Sea (Sw Mediterranean), Albert Palanques, Pere Puig, Pere Masqué, Enrique Isla

Research outputs 2022 to 2026

Trace metal contents and fluxes in downward particulate matter and dated sediment cores of the NW Alboran Sea are analysed in this study with the aim of assessing the role of the Atlantic inflow on their transport. Increases in Zn, Cu and Pb were detected in downward particulate matter collected by sediment traps after river flooding events and after the Aznalcollar mining spill. Their arrival coincided within the recently estimated time range for river particles discharged into the Gulf of Cádiz to reach the Alboran Sea, indicating that their transfer is enhanced during events of increased river inputs of contaminated …

Agricultural Groundcover Update March 2024, Justin Laycock

Natural resources published reports

• In March, over 10% (1,577,000 ha) of the arable farmland in the south-west of Western Australia had less than 50% vegetative groundcover, which is inadequate to prevent wind erosion.

• The northern grainbelt had the highest risk of wind erosion and over 20% of this farmland had inadequate groundcover.

• About 1.3% (191,000 ha) of arable land had a high to very high risk of wind erosion because groundcover was less than 30%.

Effects Of Ecologically Relevant Concentrations Of Nitrate On Behavior In Betta Splendens, Sarah Janson

Honors College

Nitrate is a ubiquitous pollutant that is becoming more prevalent in both fresh and saltwater environments. Short term effects are often studied, but an organism’s response to stress can change due to whatever the stressor is. In order to research this, a study was run using environmentally relevant nitrate treatments (0 mg/L, 10 mg/L NO3-N, and 100 mg/L NO3-N) to see the effect of nitrate on scototaxis behaviors, a measure of anxiety. This study used Betta splendens because they are easy to rear and have very well documented behaviors. In addition to the scototaxis, the effect of temperature on mortality …

The Conservation Project: An Exploration Of Multimedia In Ocean Conservation, Ilaria Bardini

Honors College

The Conservation Project ties in many elements of multimedia and its possible applications in marine conservation. The purpose of this thesis was to develop new skills in videography, photography, podcast production, and website development through which to deepen my understanding of the multimedia as a tool in science, through the development of a website.

Understanding The Connection Between Water, Fish, And Pfas Concentrations: Implications Of Fish Diet And Species-Specific Variability, Ece Yeldan

Honors College

Perfluoroalkyl and polyfluoroalkyl substances, commonly known as PFAS or “forever chemicals,” have emerged as a significant concern for both human health and the environment. These persistent compounds permeate various aspects of commerce, leading to widespread exposure and the cycling of these compounds through environmental feedback routes. Among the sources of exposure to humans, fish consumption stands out prominently. Recreational and sustenance fishing, cherished by Maine residents and indigenous communities alike, underscores the need to comprehend PFAS dynamics in fish and water. To explore the variability of PFAS accumulation in fish, water, and sediment, I conducted a comprehensive literature review. The …

Assessing The Influence Of Interseeded Cover Crops On Beneficial Arthropod Abundance In A Northeastern Agroecosystem, Charles Cooper

Honors College

Conservation agriculture approaches are gaining traction as the planet’s food system grapples with climate change, oil depletion, and rampant environmental degradation (Palm et al., 2014). Cover cropping is an integral practice of conservation agriculture. Ground dwelling arthropods play an important role in agroecosystems, providing ecosystem services including seed predation and nutrient cycling. Because the relationship between cover crops and arthropod abundance are likely influenced by management conditions, I investigated arthropod abundance in a field interseeded with cover crops on a research farm in Maine, United States. Interseeding is an emerging practice in the northeastern United States, with potential to address …

Ecological Effects And Ethics Of A Species Range Shift To High Elevation Ponds, Ava Ardito

Honors College

As temperatures warm, the climate crisis is having a significant influence on species across the world and altering their distributions. Colorado's high elevation ponds have recently observed a species range shift, traveling to higher altitudes than they have previously inhabited. The Mexican Cut Nature Preserve near the Rocky Mountain Biological Laboratory (RMBL) in Gothic, CO, is home to a prominent caddisfly Limnephilus externus, but recently a new range-shifting species, Nemotaulius hostilis, has appeared. Caddisflies play an essential role in nutrient cycling and putting energy back into the food web. The range-shifting species is known to excrete high rates of phosphorus …

Analysis Of Nonsmooth Neural Mass Models, Cadi Howell

Honors College

Neural activity in the brain involves a series of action potentials that represent “all or nothing” impulses. This implies the action potential will only “fire” if the mem- brane potential is at or above a specific threshold. The Wilson-Cowan neural mass model [6, 28] is a popular mathematical model in neuroscience that groups excita- tory and inhibitory neural populations and models their communication. Within the model, the on/off behavior of the firing rate is typically modeled by a smooth sigmoid curve. However, a piecewise-linear (PWL) firing rate function has been considered in the Wilson-Cowan model in the literature (e.g., see …