Physical Sciences and Mathematics Commons^™

Metrics For Comparison Of Complex Networks, Clarissa Reyes

Open Access Theses & Dissertations

Heuristic network statistics are used as a preliminary approach to identify change across networks. In networks where there is known node correspondence (KNC), conventional network comparison methods include taking a norm of the difference matrix, or calculating dissimilarity measures like DeltaCon and cut distance. Since different KNC measures provide varying insight to the network comparison problem, we propose employing Rank Score Characteristic Functions (RSCFs) and the rank-score process as a method for reaching a consensus when ranking quantified change across multiple pairs of networks â?? which is particularly useful for ranking change across subpopulations or subgraphs. Additionally, we propose a …

Activity Patterns Of Whiptail Lizards (Aspidoscelis) Found In The Northern Chihuahuan Desert, Guillermo Alvarez

Open Access Theses & Dissertations

Traditional lizard pitfall traps were modified to allow organisms to escape, while collecting valuable ecological data. Modified camera traps were capable of detecting the same species as traditional traps in a semi-arid environment, without posing the associated mortality risks. Pitfall-camera traps were used to sample the activity of the Side-blotched Lizard (Uta stansburiana) and the Southwestern Fence Lizard (Sceloporus cowlesi) in an urban wetland during four continuous years. Evaluations on activity pattern and the activity overlap between the two species revealed extensive overlap, with minor but significant seasonal shifts mediating coexistence. Traps were also effective at detecting other reptiles, invertebrates, …

Evaluation Of Evapotranspiration Estimates Using An Existing Hybrid Machine Learning Model In A Natural And A Managed Dryland Site, Katya Esquivel Herrera

Open Access Theses & Dissertations

Evapotranspiration (ET) is a critical component of the hydrologic cycle, encompassing both evaporative water loss from surfaces and transpiration through plant stomata. The environmental factors influencing ET include water and energy availability, atmospheric capacity for water uptake, and various meteorological variables. ET serves as a unique climate variable linking water, energy, and carbon cycles. In agroecosystems, accurate ET quantification is vital for optimizing water use efficiency, irrigation management, and crop yield. Traditional methods for ET estimation involve direct measurements and indirect models, with both presenting limitations.

Recent years have witnessed the integration of remote sensing and machine learning (ML) algorithms …

Growth Of Purple Sulfur Bacteria Allochromatium Vinosum On Solid Phase Metal Sulfides As Sulfur And Electron Sources, Hugo Alarcon

Open Access Theses & Dissertations

Purple sulfur bacteria (PSB) are photosynthetic microorganisms known for their vital roles in geochemical cycles, especially the sulfur cycle, within anoxic photic environments. PSB are also key contributors to the nitrogen, carbon, and oxygen cycles. This study focuses on the autotrophic growth of Allochromatium vinosum, a model strain of PSB, that utilize solid-phase metal sulfides (MS) as both sulfur and electron donors. Through characterizing the growth profiles of A. vinosum on pyrite (FeS2), nickel sulfide (NiS), and iron monosulfide (FeS) nanoparticles, respectively, and investigating the bacteria-MS interaction mechanisms, this work expands our current knowledge of the metabolic capabilities and flexibility …

The Ecological Effects Of Nitrogen Enrichment In Aridlands, Jennifer Holguin

Open Access Theses & Dissertations

Anthropogenic nitrogen (N) deposition is one of the most prominent factors driving global change. Across the globe, N deposition has driven major changes in terrestrial ecosystems, such as declines in plant biodiversity, enhanced exotic plant growth, and changes to biogeochemical processes involved in carbon and nutrient cycling. While noteworthy effort has been put forth to investigate the effects of N deposition on terrestrial ecosystems, a disproportionate number of N addition studies have been conducted in temperate mesic systems. Thus, we lack a holistic and mechanistic understanding of how N deposition impact aridland ecosystems. Additionally, our predictions of the effects of …

Analysis Of The Electrostatic Characteristics Of The Zika Virus Capsid Using Computational Methods, Cassandra Guadalupe Del Rio De Avila

Open Access Theses & Dissertations

Zika virus (ZIKV) is a flavivirus that is usually transmitted through the bite of infected mosquitoes. This virus can cause a variety of neurological disorders, the most common being Guillain-Barré syndrome in adults. Moreover, it is of great concern in pregnant women, since can cause deformities in the brain and other organs of newborns.Studying the structural characteristics of the virus during its mature and infectious phase can provide crucial information on the mechanisms by which it enters and replicates within host cells, as well as its evolution, transmission, and interaction with other living organisms. The symmetric pattern present in the …

Temporal Trends In Dryland Soil Carbon Fluxes In Response To Artificial And Natural Pulsed Moisture Events, Briana Alyce Salcido

Open Access Theses & Dissertations

Critical zone processes in drylands play a crucial role in the global carbon cycle, and one of the most important processes is soil CO2 efflux at the interface between soils and the atmosphere, which represents a main pathway for loss of carbon. Predicting the carbon dynamics at this interface is challenging due to the complexity of belowground processes, which include both biotic (soil respiration) and abiotic (calcite precipitation) production of CO2, as well as transport processes that include both diffusive and advective components. In this study, we aimed to investigate the contribution of soil air displacement to soil CO2 efflux …

Microscopic And Spectroscopic Analysis Of Nordihydroguaiaretic Acid Effect On Astrocytes, Lizbeth Vanessa Martinez Lopez

Open Access Theses & Dissertations

Astrocytes, one of the most abundant cell components in the central nervous system (CNS), have been a research target in the last few years. Several studies have found that astrocytes are not only mere supporters of neurons but also of essential processes developed in the CNS. Their malfunction could induce neurodegenerative diseases and brain tumors. Thus, further understanding of astrocytes and their role is of high interest to develop possible new treatments and methods of disease diagnosis, especially in brain cancer. The plant Larrea tridentata (La Gobernadora in Mexico or Creosote bush in the United States) is known to have …

Linking Decomposition Reactions In Arctic Soils To Microbial Enzyme Production, Jane Karen Martinez

Open Access Theses & Dissertations

Microbial processes such as soil enzyme production are a major driver of decomposition and a current topic of interest in arctic soils due to the effects of climate warming. Despite the advances in understanding soil enzymes, there are still knowledge gaps regarding the role of enzymes in decomposition. In this dissertation, I addressed three of those gaps in the following chapters: (Ch.2) to explore the location of enzymes within the soil matrix, (Ch.3) to identify peptides matched to soil enzymes produced by microorganisms for organic matter decomposition, and (Ch.4) understand the longevity of enzymes in the soil after microbial production. …

Developing And Applying Computational Methods On Biomolecules, Shengjie Sun

Open Access Theses & Dissertations

Computational biophysics is an interdisciplinary subject that uses numerical algorithms to study the physical principles underlying biological phenomena and processes. Electrostatic interactions play an important role in computational molecular biophysics and their potential impact on disease mechanisms. At distances larger than several Angstroms, electrostatic interactions dominate all other forces, while the alteration of short-range electrostatic pairwise interactions can also have significant effects. The dual nature of electrostatic interactions, being dominant at long-range and specific at short-range, underscores their profound implications for wild-type structure and function. Any disruption of the complex electrostatic network of interactions may abolish wild-type functionality and could …

Characterizing Spatial Variability In Soil Co2 Fluxes In The Chihuahuan Desert Using Geostatistical Techniques, Viridiana Orona

Open Access Theses & Dissertations

Spatial variability in soil CO2 efflux across landscapes is an important feature of the â??Critical Zoneâ?? within dryland ecosystems. In dryland critical zones, resources are often distributed in patches or resource islands. Although this is particularly true in natural settings, the significance of spatial variability in CO2 efflux and its patterns also extends to dryland agriculture. In both irrigated and unirrigated systems, human management practices can significantly impact both organic and inorganic carbon cycling processes, highlighting the importance of studying CO2 efflux in these systems. We examined the spatial patterns of soil CO2 efflux and quantified the magnitude and scale …