Physical Sciences and Mathematics Commons^™

A Molecular Chemodosimeter To Probe “Closed Shell” Ions In Kidney Cells, Rashid Mia

Faculty Publications

Two quinidine-functionalized coumarin molecular probes have been synthesized and have been found to bind metal cations (Cd2+, Co2+, Cu2+, Fe2+, Hg2+, Ni2+, and Zn2+) with high affinity in organic–aqueous media (DMSO–HEPES). The chemodosimeters coordinate with the Zn2+ ions in a two-to-one ratio (molecular probe : Zn2+) with a log β of 10.0 M−2. Upon the addition of the closed-shell metal ions studied, a fluorescence turn-on via an excimer formation is seen at 542 nm due to the quinaldine moiety adopting a syn arrangement when coordinated to the metal Zn2+ ions. Confocal microscopy monitored free Zn2+ ions in the Human Embryonic …

A Comparison Of The Trojan Y Chromosome Strategy To Harvesting Models For Eradication Of Non-Native Species, Jingjing Lyu, Pamela J. Schofield, Kristen M. Reaver, Matthew Beauregard, Rana D. Parshad

Faculty Publications

The Trojan Y Chromosome Strategy (TYC) is a promising eradication method for biological control of non-native species. The strategy works by manipulating the sex ratio of a population through the introduction of supermales that guarantee male offspring. In the current manuscript, we compare the TYC method with a pure harvesting strategy. We also analyze a hybrid harvesting model that mirrors the TYC strategy. The dynamic analysis leads to results on stability of solutions and bifurcations of the model. Several conclusions about the different strategies are established via optimal control methods. In particular, the results affirm that either a pure harvesting …

Large And Small Data Blow-Up Solutions In The Trojan Y Chromosome Model, Rana D. Parshad, Matthew Beauregard, Eric M. Takyi, Thomas Griffin, Landrey Bobo

Faculty Publications

The Trojan Y Chromosome Strategy (TYC) is an extremely well investigated biological control method for controlling invasive populations with an XX-XY sex determinism. In [35, 36] various dynamical properties of the system are analyzed, including well posedness, boundedness of solutions, and conditions for extinction or recovery. These results are derived under the assumption of positive solutions. In the current manuscript, we show that if the introduction rate of trojan fish is zero, under certain large data assumptions, negative solutions are possible for the male population, which in turn can lead to finite time blow-up in the female and male populations. …

Effectiveness Of Plant Species For Removing Atmospheric Ammonia, Marife B. Anunciado, Sheryll B. Jerez, Hans Williams, Joey Bray, Dean W. Coble, Rena Saito

Faculty Publications

Six plant species of Yaupon, Eastern red cedar, American holly, Arizona cypress, Arborvitae and Roughleaf dogwood were utilized to determine their effectiveness in the removal of atmospheric ammonia. All species were exposed to three ammonia levels (1, 5 and 10 ppm) in an environmental chamber. Foliar ammonia content was quantified using an enzymatic technique. The effects of exposure to ammonia on the physiological responses (e.g. photosynthetic activity, stomatal conductance, and transpiration rate) of plants in ambient condition were also determined using an open design photosynthetic gas exchange system. Foliar ammonia content was significantly different among the six plant species (p<0.0001) with Eastern red cedar exhibiting the highest content. The physiological responses differed significantly depending on the plant species and the ammonia treatment level. The photosynthetic response of plants to the presence of ammonia was mixed. At low exposure level, all species except Arborvitae had decreased photosynthetic activity, reducing by as much as 44.5% for Yaupon. At the highest concentration, however, Yaupon’s photosynthetic activity improved by about 10%. Exposure to ammonia caused increased stomatal conductance and transpiration rate on American holly and Arizona cypress, making them more susceptible to water loss.

Move It Or Lose It: Interspecific Variation In Risk Response Of Pond-Breeding Anurans, Philip Matich, Christopher M. Schalk

Faculty Publications

Changes in behavior are often the proximate response of animals to human disturbance, with variability in tolerance levels leading some species to exhibit striking shifts in life history, fitness, and/or survival. Thus, elucidating the effects of disturbance on animal behavior, and how this varies among taxonomically similar species with inherently different behaviors and life histories is of value for management and conservation. We evaluated the risk response of three anuran species—southern leopard frog (Lithobates sphenocephalus), Blanchard’s cricket frog (Acris blanchardi), and green tree frog (Hyla cinerea)—to determine how differences in microhabitat use (arboreal vs …

Correlates Of Snake Entanglement In Erosion Control Blankets, Sarah E. Ebert, Kasey L. Jobe, Christopher M. Schalk, Daniel Saenz, Cory K. Adams, Christopher E. Comer

Faculty Publications

In road construction projects across the United States, erosion control methods (e.g., erosion control blankets [ECBs]), are mandated to stimulate seedbed regeneration and prevent soil loss. Previous reports have suggested that snakes are vulnerable to entanglement in ECBs. We conducted a literature review, field surveys, and an entanglement experiment to examine what factors increase a snake’s risk of ECB entanglement. Our literature review produced reports of 175 reptiles entangled in mesh products, 89.1% of which were snakes, with 43.6% of snake entanglements occurring in erosion control products. During our field surveys, we found 10 entangled snakes (n = 2 alive; …

Site Factors Influence On Herbaceous Understory Diversity In East Texas Pinus Palustris Savannas, Brooke Mccalip, Brian Oswald, Kathryn R. Kidd, Yuhi Weng, Kenneth Farrish Phd

Faculty Publications

Longleaf pine (Pinus palustris) savannas were once dominant across the southeastern U.S., including East Texas and parts of western and central Louisiana. The diverse understory associated with these historical savannas may occasionally be seen today, but not often in longleaf pine ecosystems. This project aimed to define east Texas site characteristics that are necessary to support these ecosystems with a dense and diverse herbaceous understory with little to no midstory cover. Fifty-nine plots across three study sites were established to evaluate the influence of overstory cover, basal area, aspect, elevation, and slope on the number of plant genera present. Forest …

Accuracy Of Unmanned Aerial System (Drone) Height Measurements, Daniel Unger, I-Kuai Hung, David Kulhavy, Yanli Zhang, Kai Busch-Peterson

Faculty Publications

Vertical height estimates of earth surface features using an Unmanned Aerial System (UAS) are important in natural resource management quantitative assessments. An important research question concerns both the accuracy and precision of vertical height estimates acquired with a UAS and to determine if it is necessary to land a UAS between individual height measurements or if GPS derived height versus barometric pressure derived height while using a DJI Phantom 3 would affect height accuracy and precision. To examine this question, height along a telescopic height pole on the campus of Stephen F. Austin State University (SFASU) were estimated at 2, …

Expansion Of The Manage Database With Forest And Drainage Studies, Daren R. Harmel, Laura E. Christianson, Matthew W. Mcbroom, Douglas R. Smith, Kori D. Higgs

Faculty Publications

The “Measured Annual Nutrient loads from AGricultural Environments” (MANAGE) database was published in 2006 to expand an early 1980s compilation of nutrient export (load) data from cultivated and pasture/range land at the field or farm scale. Then in 2008, MANAGE was updated with 15 additional studies, and nitrogen (N) and phosphorus (P) concentrations in runoff were added. Since then, MANAGE has undergone significant expansion adding N and P water quality along with relevant management and site characteristic data from: (1) 30 runoff studies from forested land uses, (2) 91 drainage water quality studies from drained land, and (3) 12 additional …

Evaluating Interactive Transect Area Assessments Hands-On Instruction For Natural Resource Undergraduate Students, Daniel Unger, Sarah Schwab, Ryan Jacques, Yanli Zhang, I-Kuai Hung, David L. Kulhavy

Faculty Publications

Undergraduate students pursuing a Bachelor of Science in Spatial Science degree at Stephen F. Austin State University (SFASU) receive instruction in the spatial sciences with a focus on hands-on applications. All undergraduate students take the course Introduction to Spatial Science which includes a comprehensive overview of spatial science incorporating a comparison of standard inexpensive area assessment techniques with high-end computer based area assessment methodologies. Students within this course were instructed how to assess the area of a surface feature on an aerial image with a ruler applying the transect method. Student's average Root Mean Square Error (RMSE) between a student's …

Spatial Distribution Of Earthworms In An East Texas Forest Ecosystem, Melissa A. Bozarth, Kenneth W. Farrish, George A. Damoff, James Van Kley, J. Leon Young

Faculty Publications

Earthworms were collected and identified in different ecological habitats of the Stephen F. Austin Experimental Forest (SFAEF) in the Piney Woods Ecoregion (PWE) of Texas. Earthworm spatial distribution data were collected over four distinct ecological habitats with a range of soil conditions and vegetative cover. A total of 128 sampling plots were surveyed in two different, broadly defined locations (mesic slope = 68 plots, dry-mesic upland = 60 plots). Using multivariate classification/ordination (TWINSPAN) and detrended correspondence analysis (DCA) of overstory vegetation data, these two locations were further divided into four distinct habitats: dry-mesic mixed upland, transitional zone, mesic slope and …

Water Soluble Cationic Porphyrin Sensor For Detection Of Hg2+, Pb2+, Cd2+, And Cu2+, Matibur Zamadar, Christopher Orr, Miranda Uherek

Faculty Publications

Here we report the sensing properties of the aqueous solution of meso-tetra(N-methyl-4-pyridyl)porphine tetrachloride (1) for simultaneous detection of toxic metal ions by using UV-vis spectroscopy. Cationic porphyrin 1 displayed different electronic absorptions in UV-vis region upon interacting with Hg2+, Pb2+, Cd2+, and Cu2+ ions in neutral water solution at room temperature. Quite interestingly, the porphyrin 1 showed that it can function as a single optical chemical sensor and/or metal ion receptor capable of detecting two or more toxic metal ions, particularly Hg2+, Pb2+, and Cd2+ ions coexisting in a water sample. Porphyrin 1 in an aqueous solution provides a unique …

Integrating Hands-On Undergraduate Research In An Applied Spatial Science Senior Level Capstone Course, David Kulhavy, Daniel Unger, I-Kuai Hung, David Douglass

Faculty Publications

A senior within a spatial science Ecological Planning capstone course designed an undergraduate research project to increase his spatial science expertise and to assess the hands-on instruction methodology employed within the Bachelor of Science in Spatial Science program at Stephen F Austin State University. The height of 30 building features estimated remotely with LiDAR data, within the Pictometry remotely sensed web-based interface, and in situ with a laser rangefinder were compared to actual building feature height measurements. A comparison of estimated height with actual height indicated that all three estimation techniques tested were unbiased estimators of height. An ANOVA, conducted …

Evaluation Of The Performance Of A Rural Municipal Wastewater Treatment Plant In Nacogdoches, East Texas (Usa) (Abstract), Kefa Karimu Onchoke, Michael Janusa, Salomey Asantewaa Sasu

Faculty Publications

The performance of a rural wastewater treatment facility, Nacogdoches Wastewater Treatment Plant

(NWWTP), in East Texas, USA, was assessed from January 2013 through June 2014. The elemental concentrations (Na, Mg, Ca, Ni, Pb, Mn, Cr, Mo, and Cu, Al, As, B, Ba, Ag, Cd, Fe, Hg, K, Se, Zn, Co, P, and S) were measured using inductively coupled plasma optical emission spectrometry. The anion concentrations (Br−, NO3- , NO2- , PO34-,F−, Cl−, and SO24−) were measured by ion chromatography. In general, the NWWTP was found efficient in removal to ≥ 96% for metals. The removal efficiency for anions was in …

Winter Movements Of Louisiana Pine Snakes (Pituophis Ruthveni) In Texas And Louisiana, Josh B. Pierce, D. Craig Rudolph, Shirley J. Burgdorf, Richard R. Schaefer, Richard N. Conner, John G. Himes, C. Mike Duran, Laurence M. Hardy, Robert R. Fleet

Faculty Publications

Despite concerns that the Louisiana Pine Snake (Pituophis ruthveni) has been extirpated from large portions of its historic range, only a limited number of studies on their movement patterns have been published. Winter movement patterns are of particular interest since it has been hypothesized that impacts of management practices would be reduced during the winter. Using radiotelemetry, we determined winter movement patterns of Louisiana Pine Snakes (11 males, 8 females) in 5 study areas (2 in Louisiana and 3 in Texas). Movements during winter (November–February) were greatly curtailed compared to the remainder of the year; however, snakes occasionally undertook substantial …

A Td-Dft Study Of The Absorption Spectra Of Mono-Nitrated Fluoranthenes [Abstract], Kefa Karimu Onchoke

Faculty Publications

No abstract provided.

Synergistic Effects Of The Invasive Chinese Tallow (Triadica Sebifera) And Climate Change On Aquatic Amphibian Survival, Daniel Saenz, Erin M. Fucik, Matthew Kwiatkowski

Faculty Publications

Changes in climate and the introduction of invasive species are two major stressors to amphibians, although little is known about the interaction between these two factors with regard to impacts on amphibians. We focused our study on an invasive tree species, the Chinese tallow (Triadica sebifera), that annually sheds its leaves and produces leaf litter that is known to negatively impact aquatic amphibian survival. The purpose of our research was to determine whether the timing of leaf fall from Chinese tallow and the timing of amphibian breeding (determined by weather) influence survival of amphibian larvae. We simulated a …

Ammonium Sulfate Precipitation Combined With Liquid Chromatography Is Sufficient For Purification Of Bovine Serum Albumin That Is Suitable For Most Routine Laboratory Applications, Odutayo O. Odunuge, Alina Shazhko

Faculty Publications

The use of bovine serum albumin (BSA) in routine biochemical assays such as restriction enzyme digestion and immunodetection is plagued largely by two common contaminants, DNase and immunoglobulins G (IgGs). Acetylation of BSA to inactivate DNase limits its use as a protein standard due to interference with color development in assays such as Lowry’s. In spite of the availability of inexpensive BSA, its purification involves several cumbersome and time-consuming steps. In this work, we employed a modified strategy of ammonium sulfate precipitation coupled with liquid chromatography to purify BSA that is free of DNase and IgGs. Purified BSA tested negative …

A Dft Study Of Vibrational Spectra And Mutagenicity Predictions Of Mononitrated Fluoranthenes [Abstract], Kefa Karimu Onchoke, Jorge Ojeda

Faculty Publications

No abstract provided.

A Chronicle Of Changing American Attitudes Toward Wetlands, Matthew W. Mcbroom

Faculty Publications

No abstract provided.

Identifying Well Pads In The Haynesville Shale Region, Louisiana And Texas, With Digital Imagery, Darinda Dans, Daniel Unger, Kenneth W. Farrish, I-Kuai Hung

Faculty Publications

The Haynesville Shale is an underlying rock formation in northwest Louisiana and northeast Texas that contains vast quantities of natural gas. With new technology has come the ability to extract more natural gas from one of the largest gas deposits in the United States. With increased production, increased change in the local ecosystem will occur. It is necessary to examine oil and gas exploration effects on the local ecosystem due to changes in land cover, such as habitat loss and increased soil erosion. Remotely sensed imagery were utilized to ascertain the use of various digital image processing techniques to determine …

Cooper’S Hawk Nest Site Characteristics In The Pineywoods Region, Richard R. Schaefer, D. Craig Rudolph, Josh B. Pierce, Jesse F. Fagan

Faculty Publications

Early accounts describe the Cooper’s Hawk (Accipiter cooperi) as a species in decline in much of North America during the early twentieth century (Bent 1937), particularly when in close proximity to humans (Eaton 1914). This decreasing population trend continued to be recognized later in the century in both Texas (Oberholser 1974) and Louisiana (Lowery 1974). Shooting and trapping during the first half of the 1900s, and pesticide use (especially DDT) after World War II are suggested as primary causes of the decline (Henny and Wight 1972, Bednarz et al. 1990). The Migratory Bird Treaty Act of 1972 and the ban …

The Changing Roles Of Natural Resource Professionals: Providing Tools To Students To Teach The Public About Fire, Pat Stephens Williams, Brian Oswald, Karen Stafford, Justice Jones, David Kulhavy

Faculty Publications

The Arthur Temple College of Forestry and Agriculture (ATCOFA) at Stephen F. Austin State University is taking a proactive stance toward preparing forestry students to work closely with the public on fire planning in wildland-urban interface areas. ATCOFA's incorporation of the "Changing Roles" curriculum provides lessons on how natural resource managers' roles are (1) different than they used to be, and (2) ever-evolving. The undergraduate Forestry Field Station summer program at the University's Piney Woods Conservation Center now emphasizes the importance and challenges of working with the public. The program brings practicing professionals from the Texas Forest Service to describe …

Broad-Scale Relations Between Conservation Reserve Program And Grassland Birds: Do Cover Type, Configuration And Contract Age Matter?, Sam Riffell, Daniel Scognamillo, L. Wes Burger Jr., Shawn Bucholtz

Faculty Publications

The Conservation Reserve Program (CRP) is a voluntary cropland set-aside program where environmentally-sensitive cropland is retired to a conservation practice. Grassland birds should benefit because most CRP is grass habitat and because amount of land in CRP is highest in agriculture-dominated areas of the United States where grassland habitat has been most impacted. We used the Breeding Bird Survey and Common Land Unit (CLU) data (spatially-explicit data of farm field boundaries and land cover) to identify relations between types and configurations of CRP and grassland bird abundance in 3 Midwestern states. All 13 species we studied were related to at …

Habitat Selection By Anolis Carolinensis (Green Anole) In Open Pine Forests In Eastern Texas, Richard R. Schaefer, Robert R. Fleet, D. Craig Rudolph, Nancy E. Koerth

Faculty Publications

We initiated a mark-recapture study to determine the effects of shrub density on Anolis carolinensis (Green Anole) populations. Green Anole perch site, shrub species, and shrub volume preferences were also examined. We established two study plots of different shrub densities in open pine forests on the Angelina National Forest in eastern Texas. In late spring, the Green Anole population at the higher shrub-density plot was estimated to be 16 times greater than the population at the lower shrub-density plot. Green Anoles most commonly perched on live shrubs, but exhibited very little preference or avoidance of any particular species of live …

Use Of Trees By The Texas Ratsnake (Elaphe Obsoleta) In Eastern Texas, Josh B. Pierce, Robert R. Fleet, Lance Mcbrayer, D. Craig Rudolph

Faculty Publications

We present information on the use of trees by Elaphe obsoleta (Texas Ratsnake) in a mesic pine-hardwood forest in eastern Texas. Using radiotelemetry, seven snakes (3 females, 4 males) were relocated a total of 363 times from April 2004 to May 2005, resulting in 201 unique locations. Snakes selected trees containing cavities and used hardwoods and snags for a combined 95% of arboreal locations. Texas Ratsnake arboreal activity peaked during July and August, well after the peak of avian breeding activity, suggesting arboreal activity involves factors other than avian predation.

Spatial Ecology Of The Coachwhip, Masticophis Flagellum (Squamata: Colubridae), In Eastern Texas, Richard W. Johnson, Robert R. Fleet, Michael B. Keck, D. Craig Rudolph

Faculty Publications

We radio-tracked nine Masticophis flagellum (Coachwhips) to determine home range, habitat use, and movements in eastern Texas from April to October 2000. Home ranges of Coachwhips contained more oak savanna macrohabitat than early-successional pine plantation or forested seep, based on the availability of these three macrohabitats in the study area. Likewise, within their individual home ranges, Coachwhips used oak savanna more than the other two macrohabitats, based on availability. An analysis of microhabitat use revealed that, relative to random sites within their home range, Coachwhips were found at sites with fewer pine trees and more herbaceous vegetation taller than 30 …

Impacts Of A Manure Composting Program On Stream Water Quality, A. Bekele, A. M.S. Mcfarland, A. J. Whisenant

Faculty Publications

In February 2001, the Texas Commission on Environmental Quality (TCEQ) adopted a Total Maximum Daily Load (TMDL) for soluble reactive phosphorus (SRP) along the North Bosque River. Within this TMDL, dairy waste application fields were identified as the major nonpoint-source contribution of nutrients. In September 2000, a manure composting program was initiated that resulted in about 500,000 metric tons of dairy manure being hauled to composting facilities and exported from the watershed through December 2004. To evaluate the impact of the manure composting program on stream water quality, storm event mean concentrations of nutrients and total suspended solids were compared …

Diel Activity Patterns Of The Louisiana Pine Snakes (Pituophis Ruthveni) In Eastern Texas, Marc J. Ealy, Robert R. Fleet, D. Craig Rudolph

Faculty Publications

This study examined the diel activity patterns of six Louisiana pine snakes in eastern Texas using radio-telemetry. snakes were monitored for 44 days on two study areas from May to October 1996. Louisana pine snakes were primarily diurnal with moderate crepuscular activity, spending the night within pocket gopher burrows or inactive on the surface. During daylight hours, snakes spent approximately 59% of their time underground within gopher burrows, burned out/rotten stumps, or nine-branded armadillo (Dasypus novemcinctus) burrows. Remaining time was spent on the surface either close to subteranean refuge, or in long distance movements that generally terminet at …

Runoff And Sediment Losses From Annual And Unusual Storm Events From The Alto Experimental Watersheds, Texas: 23 Years After Silvicultural Treatments, Matthew W. Mcbroom, R Scott Beasley, Mingteh Chang, Brian Gowin, George G. Ice

Faculty Publications

Evaluating the potential impacts of intensive silvicultural practices on water quality is critical for establishing the long-term sustainability of contemporary forest management practices. From 1979 to 1985, a study involving nine small (~2.5 ha) forested watersheds was conducted near Alto, Texas in the upper western Gulf-Coastal Plain to evaluate the impacts then-current silvicultural practices on water quality. In the years following the study, silvicultural Best Management Practices (BMPs) including Streamside Management Zones (SMZs) and other erosion control practices evolved and questions arose about the applicability of earlier results to current practices. In 1999, these same watersheds were reinstrumented to evaluate …