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Physical Sciences and Mathematics Commons™
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Full-Text Articles in Physical Sciences and Mathematics
Trip: A Method For Novel Transcript Reconstruction From Paired-End Rna-Seq Reads, Serghei Mangul, Adrian Caciula, Dumitru Brinza, Ion I. Măndoiu, Alexander Zelikovskiy
Trip: A Method For Novel Transcript Reconstruction From Paired-End Rna-Seq Reads, Serghei Mangul, Adrian Caciula, Dumitru Brinza, Ion I. Măndoiu, Alexander Zelikovskiy
Computer Science Faculty Publications
Preliminary experimental results on synthetic datasets generated with various sequencing parameters and distribution assumptions show that TRIP has increased transcriptome reconstruction accuracy compared to previous methods that ignore fragment length distribution information.