Physical Sciences and Mathematics Commons^™

Aquaculture Governance: Five Engagement Arenas For Sustainability Transformation, Darien D. Mizuta, Stefan Partelow

VIMS Articles

A greater focus on governance is needed to facilitate effective and substantive progress toward sustainability transformations in the aquaculture sector. Concerted governance efforts can help move the sector beyond fragmented technical questions associated with intensification and expansion, social and environmental impacts, and toward system-based approaches that address interconnected sustainability issues. Through a review and expert-elicitation process, we identify five engagement arenas to advance a governance agenda for aquaculture sustainability transformation: (1) setting sustainability transformation goals, (2) cross-sectoral linkages, (3) land–water–sea connectivity, (4) knowledge and innovation, and (5) value chains. We then outline the roles different actors and modes of …

Assessment Of Changes Of Complex Shoreline From Medium‑Resolution Satellite Imagery, Nikolay P. Nezlin, Julie Herman, Jonathan Hodge, Stephen Sagar, Robbi Bishop-Taylor, Guangming Zheng, John M. Digiacomo

VIMS Articles

The imagery collected by medium-resolution earth-observing satellites is a powerful and cost-effective tool for the quantitative assessment of shoreline dynamics for water bodies of different spatial scales. In this study, we utilize imagery collected in 1984–2021 on the Middle Peninsula, Virginia, bordering the Chesapeake Bay, USA, by medium-resolution (10–30 m) satellites Landsat-5/7/8 and Sentinel-2A/B. The data was managed in the Earth Analytics Interoperability Lab (EAIL) Data Cube built and configured by the Commonwealth Scientific and Industrial Research Organization (CSIRO, Australia and Chile). The assessments of shoreline change demonstrate adequate agreement with assessments based on aerial photography collected during 1937–2009 by …

Road Network Analyses Elucidate Hidden Costs Of Road Flooding Under Accelerating Sea Level Rise, Molly Mitchell, Jessica Hendricks, Daniel Schatt

VIMS Articles

Introduction: As sea level rises and coastal communities simultaneously grow, road flooding has the potential to significantly disrupt travel along road networks and make houses, businesses, and critical facilities difficult to reach. The impacts of tidal and storm surge flooding on roadways present challenging social and economic considerations for all coastal jurisdictions. Maintenance, public and private accessibility, evacuation routes, emergency services are just a few of the common themes local governments are beginning to address for low-lying roadways currently known to flood. Continuation of these services allows a community to thrive, to maintain or increase its tax base, and to …

Prioritizing The Protection And Creation Of Natural And Naturebased Features For Coastal Resilience Using A Gis-Based Ranking Framework – An Exportable Approach, Jessica Hendricks, Pamela Mason, Julie Herman, Carl Hershner

VIMS Articles

Increasing the preservation and creation of natural and nature-based features (NNBF), like wetlands, living shorelines, beaches, dunes and other natural features to improve community resilience in the face of increasing coastal flooding may be achieved by highlighting the locally relevant benefits that these features can provide. Here we present a novel application of the least-cost geospatial modeling approach to generate inundation pathways that highlight landscape connections between NNBF and vulnerable infrastructure. Inundation pathways are then used to inform a ranking framework that assesses NNBF based on their provision of benefits and services to vulnerable infrastructure and for the broader community …

Sorption Of Representative Organic Contaminants On Microplastics: Effects Of Chemical Physicochemical Properties, Particle Size, And Biofilm Presence, Wenxuan Cui, Robert C. Hale, Yichao Huang, Et Al.

VIMS Articles

Microplastic pollution has attracted mounting concerns worldwide. Microplastics may concentrate organic and metallic contaminants; thus, affecting their transport, fate and organismal exposure. To better understand organic contaminant-microplastic interactions, our study explored the sorption of selected polychlorinated biphenyls (PCBs), polybrominated diphenyl ethers (PBDEs), α-hexabromocyclododecane (α-HBCDD), and organophosphate flame retardants (OPFRs) on high-density polyethylene (HDPE) and polyvinylchloride (PVC) microplastics under saline conditions. Sorption isotherms determined varied between chemicals and between HDPE and PVC microplastics. Log Freundlich sorption coefficients (Log K_F) for the targeted chemicals ranged from 2.01 to 5.27 L kg^-1 for HDPE, but were significantly lower for PVC, …

Immunofluorescence Visualization Of Polycyclic Aromatic Hydrocarbon Mixtures In The Eastern Oyster Crassostrea Virginica, Kristen M. Prossner, Hamish J. Small, Ryan Carnegie, Michael A. Unger

VIMS Articles

Bivalve mollusks including oysters have low metabolic potential and are therefore susceptible to accumulating high levels of lipophilic organic contaminants such as polycyclic aromatic hydrocarbons (PAHs). Human exposure to PAHs via consumption of this important commercial shellfish can be a serious public health concern in areas where high PAH contamination exists. Previous PAH immunohistochemical studies have been limited to laboratory-based exposures focusing on one or a few individual PAH compounds. To date, such studies have yet to explore PAH accumulation in oysters, known to have some of the highest levels of PAHs across different food products. Using a monoclonal antibody …

Sediment Metagenomics Reveals The Impacts Of Poultry Industry Wastewater On Antibiotic Resistance And Nitrogen Cycling Genes In Tidal Creek Ecosystems, Miguel Semedo, Bongkeun Song

VIMS Articles

The intensification of the poultry industry may lead to the increased spread of antibiotic resistance genes (ARGs) in the environment. However, the impacts of wastewater discharge from poultry processing plants on the sediment resistome are relatively unexplored. Furthermore, its relationships with important biogeochemical pathways, such as the N cycle, are virtually unknown. The overall objective of this study was to examine the abundance and diversity of antibiotic resistance and N cycling genes in sediment microbial communities impacted by poultry industry wastewater. We performed a metagenomic investigation of sediments in an impacted and a reference tidal creek. We also quantified the …

The Roles Of Tidal Marshes In The Estuarine Biochemical Processes: A Numerical Modeling Study, Xun Cai

VIMS Articles

Observations suggest that the existence of tidal marsh can alter the oxygen and nutrient dynamics in adjacent water bodies, but assessing the impacts of large tidal marshes on an estuary is challenging. In this study, we use a modeling approach to investigate the roles of tidal marshes on the estuarine biochemical processes. The marsh model, which simulates the ecological functions of marshes at seasonal and annual time-scales, is embedded inside an unstructured-grid three-dimensional hydrodynamic and eutrophication model (SCHISM-ICM). This modeling system simulates the growth and metabolism of the tidal marshes and links biological processes to nutrient dynamics in the water …

Influence Of Oyster Genetic Background On Levels Of Human-Pathogenic Vibrio Spp., Corinne Audemard, Kimberly S. Reece, Robert J. Latour, Lydia M. Bienlien, Ryan B. Carnegie

VIMS Articles

Human-pathogenic Vibrio bacteria are common inhabitants of oyster tissues, but our understanding of factors driving the wide range of concentrations found in individual oysters is extremely limited. We examined the influence of oyster sex and parasitism in light of their profound effects on oyster tissues against a backdrop of eastern oysters, Crassostrea virginica, from two diploid and two triploid aquacultured lines. This allowed us to examine not only the effect of oyster ploidy but also of oyster genetics, a factor never investigated with regard to human-pathogenic Vibrio species. We measured levels of total Vibrio vulnificus (vvhA), and of …

Nitrogen Reductions Have Decreased Hypoxia In The Chesapeake Bay: Evidence From Empirical And Numerical Modeling, Luke T. Frankel, Marjorie A.M. Friedrichs, Pierre St-Laurent, Aaron J. Bever, Rom Lipcius, Gopal Bhatt, Gary W. Shenk

VIMS Articles

Seasonal hypoxia is a characteristic feature of the Chesapeake Bay due to anthropogenic nutrient input from agriculture and urbanization throughout the watershed. Although coordinated management efforts since 1985 have reduced nutrient inputs to the Bay, oxygen concentrations at depth in the summer still frequently fail to meet water quality standards that have been set to protect critical estuarine living resources. To quantify the impact of watershed nitrogen reductions on Bay hypoxia during a recent period including both average discharge and extremely wet years (2016–2019), this study employed both statistical and three-dimensional (3-D) numerical modeling analyses. Numerical model results suggest that …

Joint Effects Of Fragmentation And Mercury Contamination On Marsh Periwinkle (Littoraria Irrorata) Movement, Marcos Krull, Michael C. Newman

VIMS Articles

There are different ways contaminants can interact and enhance the effects of habitat fragmentation, such as modifying the movement of organisms. The present study tested the hypothesis that mercury exacerbates the effects of
fragmentation by affecting the movement of the marsh periwinkle Littoraria irrorata and reducing the probability of snails crossing fragmented microlandscape experimental systems. How these changes could affect the search efficiency of organisms in the long term was assessed using hidden Markov models and random walks simulations. Bayesian nonlinear
models were used to analyze the effects of fragmentation and contamination on the mean speed and mean directional change …

A Geospatial Modeling Approach To Assess Site Suitability Of Living Shorelines And Emphasize Best Shoreline Management Practices, Karinna Nunez, Tamia Rudnicky, Pamela Mason, Christine Tombleson, Marcia Berman

VIMS Articles

The Shoreline Management Model (SMM) is a novel geospatial approach used to assess conditions along a shoreline, and recommend best management practices for defended and undefended shorelines. The SMM models available spatial data in order to identify areas where the use of living shorelines would be suitable to address shoreline erosion. The model was developed to support and inform decision-making by shoreline managers responsible for management of shoreline resources, shorefront property owners, and tidal habitat restoration actions. Recommended erosion control strategies are based on scientific knowledge of how shorelines respond to natural conditions and anthropogenic measures used to stabilize shorelines. …

Multiple Dimensions Of Functional Diversity Affect Stream Fish Taxonomic Β-Diversity, Luke M. Bower, Lauren Stoczynski, Brandon K. Peoples, Christopher J. Patrick, Bryan L. Brown

VIMS Articles

1. When investigating metacommunity dynamics, functional differences among
species are often assumed to be as important as environmental differences be-
tween sites in determining β-diversity. However, few studies have examined the
influence of functional diversity on β-diversity. We examine the relative importance of regional functional diversity partitioned by niche dimensions and environmental variation in structuring taxonomic β-diversity of stream fishes using a large dataset of stream fish assemblages (hereafter, simply β-diversity). We predicted that both functional diversity and environmental variation play a rolein determining β-diversity.
2. We tested this prediction by modelling the patterns of stream fish β-diversity as
a …

Enhancing Assessments Of Blue Carbon Stocks In Marsh Soils Using Bayesian Mixed-Effects Modeling With Spatial Autocorrelation — Proof Of Concept Using Proxy Data, Grace S. Chiu, Molly Mitchell, Julie Herman, Christian Longo, Kate Davis

VIMS Articles

Our paper showcases the potential gain in scientific insights about blue carbon stocks (or total organic carbon) when additional rigor, in the form of a spatial autocorrelation component, is formally incorporated into the statistical model for assessing the variability in carbon stocks. Organic carbon stored in marsh soils, or blue carbon (BC), is important for sequestering carbon from the atmosphere. The potential for marshes to store carbon dioxide, mitigating anthropogenic contributions to the atmosphere, makes them a critical conservation target, but efforts have been hampered by the current lack of robust methods for assessing the variability of BC stocks at …

A Global Synthesis Of Human Impacts On The Multifunctionality Of Streams And Rivers, Mario Brauns, Daniel C. Allen, Iola G. Boëchat, Wyatt F. Cross, Verónica Ferreira, Daniel Graeber, Christopher J. Patrick, Et Al

VIMS Articles

Human impacts, particularly nutrient pollution and land-use change, have caused significant declines in the quality and quantity of freshwater resources. Most global assessments have concentrated on species diversity and composition, but effects on the multifunctionality of streams and rivers remain unclear. Here, we analyse the most comprehensive compilation of stream ecosystem functions to date to provide an overview of the responses of nutrient uptake, leaf litter decomposition, ecosystem productivity, and food web complexity to six globally pervasive human stressors. We show that human stressors inhibited ecosystem functioning for most stressor-function pairs. Nitrate uptake efficiency was most affected and was inhibited …

A Novel Antibody-Based Biosensor Method For The Rapid Measurement Of Pah Contamination In Oysters, Kristen M. Prossner, George G. Vadas, Ellen Harvey, Michael A. Unger

VIMS Articles

Conventional PAH analytical methods are time-consuming and expensive, limiting their utility in time sensitive events (i.e. oil spills and floods) or for widespread environmental monitoring. Unreliable and inefficient screening methods intended to prioritize samples for more extensive analyses exacerbate the issue. Antibody-based biosensor technology was implemented as a quantitative screening method to measure total PAH concentration in adult oysters (Crassostrea virginica) — a well-known bioindicator species with ecological and commercial significance. Individual oysters were analyzed throughout the historically polluted Elizabeth River watershed (Virginia, USA). Significant positive association was observed between biosensor and GC–MS measurements that persisted when the method was …

Long-Term Annual Aerial Surveys Of Submersed Aquatic Vegetation (Sav) Support Science, Management, And Restoration, Robert J. Orth, William C. Dennison, Cassie Gurbisz, (...), Kenneth A. Moore, Christopher J. Patrick, (..), David J. Wilcox, Richard A. Batiuk

VIMS Articles

Aerial surveys of coastal habitats can uniquely inform the science and management of shallow, coastal zones, and when repeated annually, they reveal changes that are otherwise difficult to assess from ground-based surveys. This paper reviews the utility of a long-term (1984–present) annual aerial monitoring program for submersed aquatic vegetation (SAV) in Chesapeake Bay, its tidal tributaries, and nearby Atlantic coastal bays, USA. We present a series of applications that highlight the program’s importance in assessing anthropogenic impacts, gauging water quality status and trends, establishing and evaluating restoration goals, and understanding the impact of commercial fishing practices on benthic habitats. These …

Extreme Event Ecology Needs Proactive Funding, Christopher J. Patrick, Enie Hensel, John S. Kominoski, Beth A. Stauffer, William H. Mcdowell

VIMS Articles

Commentary:

Extreme events such as wildfires, hurricanes, and floods have increased in frequency and intensity. It is no longer a question of if, but rather when and where these events will occur (Stott 2016), with adverse impacts on essential ecosystem
services including clean water, harvestable materials, and carbon sequestration. In some cases, extreme events such as wildfires may have positive impacts on populations and ecosystems. Managing these impacts requires understanding how environmental context as well as ecosystem and disturbance characteristics drive system responses (Hogan et al. 2020). However, funding for ecological extreme events research, such as through the US National …

Influence Of Salinity On Sav Distribution In A Series Of Intermittently Connected Coastal Lakes, A. Challen Hyman, Rom Lipcius, R. Gray, D. B. Stephens

VIMS Articles

Intermittently closed and open lakes and lagoons (ICOLLs) are coastal lakes that intermittently exchange water with the sea and experience saline intrusions. Understanding effects of seawater exchange on local biota is important to preserve ecosystem functioning and ecological integrity. Coastal dune lakes of northwest Florida are an understudied group of ICOLLs in close geographic proximity and with entrance regimes operating along a frequency continuum. We exploited this natural continuum and corresponding water chemistry gradient to determine effects of water chemistry on resident submersed aquatic vegetation (SAV) distributions in these ecosystems. SAV distribution decreased with increases in salinity, but was unaffected …

Effects Of Tidal Flooding On Estuarine Biogeochemistry: Quantifying Flood-Driven Nitrogen Inputs In An Urban, Lower Chesapeake Bay Sub-Tributary, Alfonso Macías-Tapia, Margaret R. Mulholland, Corday R. Selden, Jon Derek Loftis, Peter W. Bernhardt

VIMS Articles

Sea level rise has increased the frequency of tidal flooding even without accompanying precipitation in many coastal areas worldwide. As the tide rises, inundates the landscape, and then recedes, it can transport organic and inorganic matter between terrestrial systems and adjacent aquatic environments. However, the chemical and biological effects of tidal flooding on urban estuarine systems remain poorly constrained. Here, we provide the first extensive quantification of floodwater nutrient concentrations during a tidal flooding event and estimate the nitrogen (N) loading to the Lafayette River, an urban tidal sub-tributary of the lower Chesapeake Bay (USA). To enable the scale of …

Formation Of Oil-Particle-Aggregates: Numerical Model Formulation And Calibration, Linlin Cui, Courtney K. Harris, Danielle R.N. Tarpley

VIMS Articles

When oil spills occur in turbid waters, the oil droplets and mineral grains can combine to form oil-particle aggregates (OPAs). The formation of OPAs impacts the vertical transport of both the oil and the mineral grains; especially increasing deposition of oil to the seabed. Though the coastal oceans can be very turbid, to date, few numerical ocean models have accounted for aggregation processes that form OPAs. However, interactions between oil and mineral aggregates may be represented using techniques developed to account for sediment aggregation. As part of Consortium for Simulation of Oil Microbial Interactions in the Ocean (CSOMIO), we modified …

Impact Assessment And Management Challenges Of Key Rural Human Health Infrastructure Under Sea Level Rise, Molly Mitchell, Robert Isdell, Julie Herman, Christine Tombleson

VIMS Articles

Accelerating sea level rise in Virginia, United States, will significantly increase the flooding threat to low-lying roads, residences, and critical infrastructure as well as raise the water table, allowing saltwater intrusion into well water and threatening the function of septic fields. Although most of the adaptation work in Virginia has focused on urban economic centers, the majority of the coastline is rural and faces different threats and opportunities to address them compared to urban areas due to their reduced economic assets and their reliance on private infrastructure. In this case study, we assess the potential for geospatially quantifying impact to …

Connectivity: Insights From The U.S. Long Term Ecological Research Network, David M. Iwaniec, Michael Gooseff, Katherine N. Suding, David S. Johnson, Et Al

VIMS Articles

Ecosystems across the United States are changing in complex and surprising ways. Ongoing demand for critical ecosystem services requires an understanding of the populations and communities in these ecosystems in the future. This paper represents a synthesis effort of the U.S. National Science Foundation-funded Long-Term Ecological Research (LTER) network addressing the core research area of “populations and communities.” The objective of this effort was to show the importance of long-term data collection and experiments for addressing the hardest questions in scientific ecology that have significant implications for environmental policy and management. Each LTER site developed at least one compelling case …

Real-Time Environmental Forecasts Of The Chesapeake Bay: Model Setup, Improvements, And Online Visualization, Aaron Bever, Marjorie A.M. Friedrichs, Pierre St-Laurent

VIMS Articles

Daily real-time nowcasts (current conditions) and 2-day forecasts of environmental conditions in the Chesapeake Bay have been continuously available for 4 years. The forecasts use a 3-D hydrodynamic-biogeochemical model with 1–2 km resolution and 3-D output every 6 h that includes salinity, water temperature, pH, aragonite saturation state, alkalinity, dissolved oxygen, and hypoxic volume. Visualizations of the forecasts are available through a local institutional website (www.vims.edu/hypoxia) and the MARACOOS Oceans Map portal (https://oceansmap.maracoos.org/chesapeake-bay/). Modifications to real-time graphics on the local website are routinely made based on stakeholder input and are formatted for use on a mobile …

Experimental Tree Mortality Does Not Induce Marsh Transgression In A Chesapeake Bay Low-Lying Coastal Forest, David C. Walters, Joel A. Carr, (...), Matthew L. Kirwan, Et Al

VIMS Articles

Transgression into adjacent uplands is an important global response of coastal wetlands to accelerated rates of sea level rise. “Ghost forests” mark a signature characteristic of marsh transgression on the landscape, as changes in tidal inundation and salinity cause bordering upland tree mortality, increase light availability, and the emergence of tidal marsh species due to reduced competition. To investigate these mechanisms of the marsh migration process, we conducted a field experiment to simulate a natural disturbance event (e.g., storm-induced flooding) by inducing the death of established trees (coastal loblolly pine, Pinus taeda) at the marsh-upland forest ecotone. After this simulated …

Living Shorelines Achieve Functional Equivalence To Natural Fringe Marshes Across Multiple Ecological Metrics, Robert Isdell, Donna M. Bilkovic, Amanda Guthrie, Molly Mitchell, Randolph M. Chambers, Matthias Leu, Carl Hershner

VIMS Articles

Nature-based shoreline protection provides a welcome class of adaptations to promote ecological resilience in the face of climate change. Along coastlines, living shorelines are among the preferred adaptation strategies to both reduce erosion and provide ecological functions. As an alternative to shoreline armoring, living shorelines are viewed favorably among coastal managers and some private property owners, but they have yet to undergo a thorough examination of how their levels of ecosystem functions compare to their closest natural counterpart: fringing marshes. Here, we provide a synthesis of results from a multi-year, large-spatial-scale study in which we compared numerous ecological metrics (including …

Advancing Estuarine Ecological Forecasts: Seasonal Hypoxia In Chesapeake Bay, Donald Scavia, Isabella Bertani, (...), Marjorie A.M. Friedrichs, Et Al

VIMS Articles

Ecological forecasts are quantitative tools that can guide ecosystem management. The coemergence of extensive environmental monitoring and quantitative frameworks allows for widespread development and continued improvement of ecological forecasting systems. We use a relatively simple estuarine hypoxia model to demonstrate advances in addressing some of the most critical challenges and opportunities of contemporary ecological forecasting, including predictive accuracy, uncertainty characterization, and management relevance. We explore the impacts of different combinations of forecast metrics, drivers, and driver time windows on predictive performance. We also incorporate multiple sets of state-variable observations from different sources and separately quantify model prediction error and measurement …

Coastal Setting Determines Tidal Marsh Sustainability With Accelerating Sea-Level Rise, Karinna Nunez, Yinglong J. Zhang, Donna M. Bilkovic, Carl Hershner

VIMS Articles

There is an increasing concern over how accelerated rates of sea-level rise (SLR) will impact tidal marsh ecosystems. The present study evaluates the potential impacts of SLR on marsh sustainability using the Tidal Marsh Model (TMM) with the addition of a new vegetation algorithm within the SCHISM (Semi-implicit Cross-scale Hydroscience Integrated System Model) framework. This new functionality contributes to an improved understanding of how vegetation affects the mean flow velocity and turbulence, and consequently, the sedimentation processes. Using two SLR scenarios (intermediate and extreme SLR rates), we projected the changes in marsh extent over the next 50 years in two …

Evaluation Of A Rapid Biosensor Tool For Measuring Pah Availability In Petroleum-Impacted Sediment, Jason Conder, Mehregan Jalalizadeh, (...), Michael A. Unger

VIMS Articles

Decades of research have shown that the concentration of freely dissolved PAH (C_free) in sediment correlates with PAH bioavailability and toxicity to aquatic organisms. Passive sampling techniques and models have been used for measuring and predicting C_free, respectively, but these techniques require weeks for analytical chemical measurements and data evaluation. This study evaluated the performance of a portable, field-deployable antibody-based PAH biosensor method that can provide measurements of PAH C_free within a matter of minutes using a small volume of mechanically-extracted sediment porewater. Four sediments with a wide range of PAHs (ΣPAH 2.4 to 307 …

On The Human Appropriation Of Wetland Primary Production, James E. Cloern, Samuel M. Safran, Lydia Smith Vaughn, (...), Elizabeth A. Canuel, J.Letitia Grenier

VIMS Articles

Humans are changing the Earth's surface at an accelerating pace, with significant consequences for ecosystems and their biodiversity. Landscape transformation has far-reaching implications including reduced net primary production (NPP) available to support ecosystems, reduced energy supplies to consumers, and disruption of ecosystem services such as carbon storage. Anthropogenic activities have reduced global NPP available to terrestrial ecosystems by nearly 25%, but the loss of NPP from wetland ecosystems is unknown. We used a simple approach to estimate aquatic NPP from measured habitat areas and habitat-specific areal productivity in the largest wetland complex on the USA west coast, comparing historical and …