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Full-Text Articles in Physical Sciences and Mathematics

Bioconversion Of Industrial Hemp Biomass For Bioethanol Production: A Review, Jikai Zhao, Youjie Xu, Weiqun Wang, Jason Griffin, Kraig Roozeboom, Donghai Wang Dec 2020

Bioconversion Of Industrial Hemp Biomass For Bioethanol Production: A Review, Jikai Zhao, Youjie Xu, Weiqun Wang, Jason Griffin, Kraig Roozeboom, Donghai Wang

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Industrial hemp (Cannabis sativa L.) with robust drought-resistant features has excellent agronomic and pharmaceutical characteristics. As the federal prohibition on hemp cultivation was lifted, its valorization in various aspects is highly required. This review aims to summarize the potential of hemp biomass for bioethanol production. Chemical compositions of hemp biomass were evaluated as compared with those of corn fiber, corn stover, and sorghum bagasse. Several representative pretreatment technologies used for hemp biomass were summarized in terms of sugar recoveries, lignin removal, and sugar and ethanol yields. This review presents numerous technical barriers attributed to insufficient fermentable sugar and ethanol …


Compost And Biochar To Promote Soil Biological Activities Under Sweet Potatoes Cultivation In A Subtropical Semiarid Region, Josabeth Navarro, Jahdiel Salazar, James Jihoon Kang, Jason Parsons, Chu-Lin Cheng, Alexandria Castillo, Engil Isadora Pujol Pereira Nov 2020

Compost And Biochar To Promote Soil Biological Activities Under Sweet Potatoes Cultivation In A Subtropical Semiarid Region, Josabeth Navarro, Jahdiel Salazar, James Jihoon Kang, Jason Parsons, Chu-Lin Cheng, Alexandria Castillo, Engil Isadora Pujol Pereira

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

South Texas is located in a subtropical semiarid climate, and due to high temperature and irregular precipitation, farmers opt to leave their fields fallow during the summer months jeopardizing overall soil health. We evaluated whether sweet potato (Ipomoea batatas) cultivation coupled with drip irrigation could restore soil biological activities compared with bare fallow. Additionally, because sweet potatoes have high demand of soil nutrients, especially potassium (K), we evaluated the nutrient supply of locally sourced soil amendments. Sweet potato was cultivated during summer 2018 in McAllen, Texas, under control (no fertilizer), NPK (synthetic fertilizer), RC (yard-waste compost), and AC (compost produced …


Characterization Of Pathogen Airborne Inoculum Density By Information Theoretic Analysis Of Spore Trap Time Series Data, Robin A. Choudhury, Neil Mcroberts Nov 2020

Characterization Of Pathogen Airborne Inoculum Density By Information Theoretic Analysis Of Spore Trap Time Series Data, Robin A. Choudhury, Neil Mcroberts

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

In a previous study, air sampling using vortex air samplers combined with species-specific amplification of pathogen DNA was carried out over two years in four or five locations in the Salinas Valley of California. The resulting time series data for the abundance of pathogen DNA trapped per day displayed complex dynamics with features of both deterministic (chaotic) and stochastic uncertainty. Methods of nonlinear time series analysis developed for the reconstruction of low dimensional attractors provided new insights into the complexity of pathogen abundance data. In particular, the analyses suggested that the length of time series data that it is practical …


Host Density Dependence And Environmental Factors Affecting Laurel Wilt Disease Incidence, Robin A. Choudhury, H. L. Er, M. Hughes, J. A. Smith, G. E. Pruett, J. Konkol, R. C. Ploetz, J. J. Marois, K. A. Marois, A. H. C. Van Bruggen Nov 2020

Host Density Dependence And Environmental Factors Affecting Laurel Wilt Disease Incidence, Robin A. Choudhury, H. L. Er, M. Hughes, J. A. Smith, G. E. Pruett, J. Konkol, R. C. Ploetz, J. J. Marois, K. A. Marois, A. H. C. Van Bruggen

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Host size, density, and distribution, in addition to climate, can affect the likelihood a pathogen will invade and saturate landscapes. Laurel wilt, caused by the vector‐borne pathogen Raffaelea lauricola, has devastated populations of native Lauraceae in the Southeastern US, and continues to spread. We surveyed 87 plots in six coastal islands in South Carolina, Georgia, and North Florida, and one inland site (Archbold Biological Station) in South Florida for laurel wilt‐affected and non‐affected individual plants belonging to the genus Persea. The coastal island sites were surveyed once in 2008 or 2009, and the inland site was surveyed eight …


Marine Wild-Capture Fisheries After Nuclear War, Kim J. N. Scherrer, Cheryl S. Harrison, Ryan F. Heneghan, Eric Galbraith, Charles G. Bardeen, Joshua Coupe, Jonas Jägermeyr, Nicole S. Lovenduski, August Luna, Alan Robock, Jessica Stevens, Samantha Stevenson, Owen B. Toon, Lili Xia Nov 2020

Marine Wild-Capture Fisheries After Nuclear War, Kim J. N. Scherrer, Cheryl S. Harrison, Ryan F. Heneghan, Eric Galbraith, Charles G. Bardeen, Joshua Coupe, Jonas Jägermeyr, Nicole S. Lovenduski, August Luna, Alan Robock, Jessica Stevens, Samantha Stevenson, Owen B. Toon, Lili Xia

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Nuclear war, beyond its devastating direct impacts, is expected to cause global climatic perturbations through injections of soot into the upper atmosphere. Reduced temperature and sunlight could drive unprecedented reductions in agricultural production, endangering global food security. However, the effects of nuclear war on marine wild-capture fisheries, which significantly contribute to the global animal protein and micronutrient supply, remain unexplored. We simulate the climatic effects of six war scenarios on fish biomass and catch globally, using a state-of-the-art Earth system model and global process-based fisheries model. We also simulate how either rapidly increased fish demand (driven by food shortages) or …


Brown Spot In Table Grape Redglobe Controlled In Study With Sulfur Dioxide And Temperature Treatments, Cassandra A. Young, Robin A. Choudhury, Carlos H. Crisosto, W. Douglas Gubler Oct 2020

Brown Spot In Table Grape Redglobe Controlled In Study With Sulfur Dioxide And Temperature Treatments, Cassandra A. Young, Robin A. Choudhury, Carlos H. Crisosto, W. Douglas Gubler

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Brown spot is a postharvest disease of grapes caused by Cladosporium species in the San Joaquin Valley of California. It spreads during cold storage and transport, resulting in severe economic losses to late table grape cultivars, which are grown mainly for export to countries such as China and Mexico. We examined the effect of temperature and sulfur dioxide (SO2) treatments on fungal growth and infection of Redglobe berries by three Cladosporium species: Cladosporium ramotenellum, C. cladosporioides and C. limoniforme. Redglobe is especially popular for export. Fungal colonies growing on potato dextrose agar in petri plates stored at −2°C grew slower …


Deep Sea Isopods From The Western Mediterranean: Distribution And Habitat, Joan E. Cartes, Diego F. Figueroa Oct 2020

Deep Sea Isopods From The Western Mediterranean: Distribution And Habitat, Joan E. Cartes, Diego F. Figueroa

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Isopods are a highly diversified group of deep-sea fauna, with a wide variety of shapes which must reflect a similar great variety of adaptations to the deep environments. The deep Mediterranean, however, has a low diversity of isopods related to its oligotrophy, the thermal stability of deep-water masses (∼12.8 °C below 150 - 200 m) and rather homogeneous geomorphology. The main factor defining isopod habitats in the Balearic Basin is insularity vs mainland influence. Desmosomatidae and Ischnomesidae, examples of epibenthic species (with lack of paddle-shaped legs and non/low-natatory capacity) are mainly linked to mainland areas with higher % organic matter …


Impacts Of Compaction Load And Procedure On Stress-Deformation Behaviors Of A Soil Geosynthetic Composite (Sgc) Mass—A Case Study, Meenwah Gui, Truc Phan, Thang Pham Sep 2020

Impacts Of Compaction Load And Procedure On Stress-Deformation Behaviors Of A Soil Geosynthetic Composite (Sgc) Mass—A Case Study, Meenwah Gui, Truc Phan, Thang Pham

Civil Engineering Faculty Publications and Presentations

Fill compaction in the construction of Geosynthetic Reinforced Soil (GRS) mass is typically performed by operating a vibratory or roller compactor, which in turns imposed a compaction load in direction perpendicular to the wall face. The compaction process resulted in the development of the so-called compaction-induced stress (CIS), which may subsequently increase the stiffness and strength of the fill material. Compaction process is normally simulated using one of the following compaction procedures—(i) a uniformly distributed load acting on the top surface of each soil lift, (ii) a uniformly distributed load acting on the top and bottom surface of each soil …


Assessing The Influence Of International Environmental Treaty Secretariats Using A Relational Network Approach, Andrew M. Song, Owen Temby, Dongkyu Kim, Gordon M. Hickey Sep 2020

Assessing The Influence Of International Environmental Treaty Secretariats Using A Relational Network Approach, Andrew M. Song, Owen Temby, Dongkyu Kim, Gordon M. Hickey

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The influential role of international treaty secretariats in coordinating bureaucracies across jurisdictional boundaries has been highlighted in recent years. While we now better understand how their influence occurs, the field still faces a substantial difficulty in answering the basic quantitative question of “how influential?” By employing network analysis, we devised and tested a survey to quantify secretariat influence within an international environmental regime. We applied the survey tool to two transboundary fisheries governance networks in North America and here focus on the Great Lakes Fishery Commission (GLFC) as our primary case study. The results demonstrate a high ability of treaty …


High Ethanol Concentration (77 G/L) Of Industrial Hemp Biomass Achieved Through Optimizing The Relationship Between Ethanol Yield/Concentration And Solid Loading, Jikai Zhao, Youjie Xu, Weiqun Wang, Jason Griffin, Donghai Wang Aug 2020

High Ethanol Concentration (77 G/L) Of Industrial Hemp Biomass Achieved Through Optimizing The Relationship Between Ethanol Yield/Concentration And Solid Loading, Jikai Zhao, Youjie Xu, Weiqun Wang, Jason Griffin, Donghai Wang

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

In this study, the relationships between ethanol yield/concentration and solid loading (6–21%) were investigated to enhance ethanol titer and avoid a random choice of solid loading for simultaneous saccharification and fermentation (SSF). Alkali-pretreated hemp biomass was used for SSF in four scenarios including Case I: 30 filter paper unit (FPU)-cellulase and 140 fungal xylanase unit (FXU)-hemicellulase/g-solid; Case II: 40 FPU-cellulase and 140 FXU-hemicellulase/g-solid; Case III: 30 FPU-cellulase and 140 FXU-hemicellulase/g-solid with 1% Tween80; and Case IV: 30 FPU-cellulase and 140 FXU-hemicellulase/g-solid with particle size reduction (<0.2 mm). Results showed that bioethanol yield and concentration had a negative linear (R2 = 0.76–0.93) and quadratic (R2 = 0.96–0.99) correlation with solid …


Imidacloprid Movement Into Fungal Conidia Is Lethal To Mycophagous Beetles, Robin A. Choudhury, Andrew M. Sutherland, Matt J. Hengel, Michael P. Parrella, W. Douglass Gubler Aug 2020

Imidacloprid Movement Into Fungal Conidia Is Lethal To Mycophagous Beetles, Robin A. Choudhury, Andrew M. Sutherland, Matt J. Hengel, Michael P. Parrella, W. Douglass Gubler

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Applications of systemic pesticides can have unexpected direct and indirect effects on nontarget organisms, producing ecosystem-level impacts. We investigated whether a systemic insecticide (imidacloprid) could be absorbed by a plant pathogenic fungus infecting treated plants and whether the absorbed levels were high enough to have detrimental effects on the survival of a mycophagous beetle. Beetle larvae fed on these fungi were used to assess the survival effects of powdery mildew and imidacloprid in a factorial design. Fungal conidia were collected from treated and untreated plants and were tested for the presence and concentration of imidacloprid. The survival of beetles fed …


Influence Of Landscape Factors On Wildlife Presence And Road Mitigation Structure Performance, Taylor M. Hopkins Aug 2020

Influence Of Landscape Factors On Wildlife Presence And Road Mitigation Structure Performance, Taylor M. Hopkins

Theses and Dissertations

There are roughly 80 ocelots (Leopardus pardalis) remaining in the United States, with the entire population constrained to south Texas, with roadkill being a predominant source of mortality. To prevent additional roadkill and maintain wildlife movement, Texas Department of Transportation constructed 11.9 kilometers of wildlife exclusion fencing, 5 wildlife crossing structures (WCS), and 18 wildlife guards on State Highway 100. This thesis focused on determining the effort required for a control-impact monitoring study, the influence of biotic and abiotic factors around the roadway on wildlife presence, and the performance of mitigation structures and the road mitigation corridor. This …


Development And Assessment Of An Environmental Dna (Edna) Assay For The Rio Grande Siren And Review Of Edna Metabarcoding Applications, Krista M. Ruppert Aug 2020

Development And Assessment Of An Environmental Dna (Edna) Assay For The Rio Grande Siren And Review Of Edna Metabarcoding Applications, Krista M. Ruppert

Theses and Dissertations

Environmental DNA (eDNA) assays have become a major aspect of amphibian surveys in the past decade. These methods are highly sensitive, making them well-suited for monitoring rare and cryptic species. Current efforts to study the Rio Grande Siren in south Texas have been hampered due to the cryptic nature of these aquatic salamanders. Arid conditions further add to the difficulty in studying this species, as many water bodies they inhabit are ephemeral, sometimes constraining sampling efforts to a short window after heavy rain. Additionally, sirens are known to cease activity and reside underground when ponds begin to dry or as …


The Application Of Advanced Technologies For Agriculture And Rangeland Management, Matthew D. Kutugata Aug 2020

The Application Of Advanced Technologies For Agriculture And Rangeland Management, Matthew D. Kutugata

Theses and Dissertations

This project demonstrates two applications of remote sensing in agricultural and rangeland environments. In the first, an unmanned aerial system (UAS) equipped with a multi-spectral sensor was used to estimate canopy cover across four different cover crop trials at four time periods. In the second, a local database of stationary camera trap images of wildlife was used to train a convolutional neural network to automatically catalogue images by identifying the animal in those images. Both projects aimed to provide an example of how remote sensing platforms and machine learning techniques can facilitate the rapid collection and processing of large-scale field …


Reaching 1.5 And 2.0 ◦C Global Surface Temperature Targets Using Stratospheric Aerosol Geoengineering, Simone Tilmes, Douglas G. Macmartin, Jan T. M. Lenaerts, Leo Van Kampenhout, Laura Muntjewerf, Lili Xia, Cheryl S. Harrison, Kristen M. Krumhardt, Michael J. Mills, Ben Kravitz, Alan Robock Jul 2020

Reaching 1.5 And 2.0 ◦C Global Surface Temperature Targets Using Stratospheric Aerosol Geoengineering, Simone Tilmes, Douglas G. Macmartin, Jan T. M. Lenaerts, Leo Van Kampenhout, Laura Muntjewerf, Lili Xia, Cheryl S. Harrison, Kristen M. Krumhardt, Michael J. Mills, Ben Kravitz, Alan Robock

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

A new set of stratospheric aerosol geoengineering (SAG) model experiments has been performed with Community Earth System Model version 2 (CESM2) with the Whole Atmosphere Community Climate Model (WACCM6) that are based on the Coupled Model Intercomparison Project phase 6 (CMIP6) overshoot scenario (SSP5-34-OS) as a baseline scenario to limit global warming to 1.5 or 2.0 ◦C above 1850–1900 conditions. The overshoot scenario allows us to applying a peak-shaving scenario that reduces the needed duration and amount of SAG application compared to a high forcing scenario. In addition, a feedback algorithm identifies the needed amount of sulfur dioxide injections in …


South Texas Coastal Area Storm Surge Model Development And Improvement, Sara E. Davila, Cesar Davila Hernandez, Martin Flores, Jungseok Ho Jul 2020

South Texas Coastal Area Storm Surge Model Development And Improvement, Sara E. Davila, Cesar Davila Hernandez, Martin Flores, Jungseok Ho

Civil Engineering Faculty Publications and Presentations

The intensification of climatic changes, mainly natural geophysical hazards like hurricanes, are of great interest to the South Texas region. Scientists and engineers must protect essential resources from coastal threats, such as storm surge. This study presents the development process and improvements of a hydrodynamic finite element model that covers the South Texas coast, specifically the Lower Laguna Madre, for the aid of local emergency management teams. Four historical tropical cyclone landfalls are evaluated and used as a means of verification of the hydrodynamic model simulation results. The parameters used to improve the accuracy of the model are the tidal …


Overexpression Of Strigolactone-Associated Genes Exerts Fine-Tuning Selection On Soybean Rhizosphere Bacterial And Fungal Microbiome, Fang Liu, John Hollis Rice, Valeria Lopes, Parwinder Grewal, Sarah L. Lebeis, Tarek Hewezi, Margaret E. Staton Jul 2020

Overexpression Of Strigolactone-Associated Genes Exerts Fine-Tuning Selection On Soybean Rhizosphere Bacterial And Fungal Microbiome, Fang Liu, John Hollis Rice, Valeria Lopes, Parwinder Grewal, Sarah L. Lebeis, Tarek Hewezi, Margaret E. Staton

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Strigolactones are a recently discovered class of carotenoid-derived plant hormones with a wide variety of functions, including acting as signaling molecules in the rhizosphere to promote arbuscular mycorrhizal fungi colonization and parasitic seed germination. To determine whether strigolactones influence the recruitment of microbes to the rhizosphere, we characterized both bacterial and fungal communities in response to the overexpression of genes involved in strigolactone biosynthesis (MAX1d) and signaling perception (D14 and MAX2a) in soybean (Glycine max). The amplicon sequencing-based results suggest that strigolactone overexpression lines had altered soybean rhizosphere bacteria composition at both the community …


The Influence Of Human Disturbance On Wildlife Use Of A Highway In South Texas, Thomas J. Yamashita Jul 2020

The Influence Of Human Disturbance On Wildlife Use Of A Highway In South Texas, Thomas J. Yamashita

Theses and Dissertations

Roads can greatly impact wildlife. Wildlife vehicle collisions contribute to population declines while disturbance from human activity may prevent wildlife from using areas around roads. The construction of mitigation structures may lessen these effects through fine scale modification of animal use of roadside areas. In this thesis, how the construction of wildlife mitigation structures impacted the fine scale distribution of wildlife on State Highway 100 in Cameron County, Texas was examined. Spatial and temporal scale may also influence these relationships. The relationship between human activity and wildlife activity around the highway was explored and how the distribution of wildlife road …


Analysis Of The Facilitative Interaction Between Batis Maritima And Avicennia Germinans As A Mangrove Restoration Strategy, Javier R. Navarro Jul 2020

Analysis Of The Facilitative Interaction Between Batis Maritima And Avicennia Germinans As A Mangrove Restoration Strategy, Javier R. Navarro

Theses and Dissertations

The multiple experiments conducted in an Avicennia germinans forest in Laguna Vista, TX was focused on determining if facilitation theory could explain the behavior observed between the herbaceous halophyte Batis maritima and A. germinans. I hypnotized that a positive interaction exists but through which mechanisms of facilitation I did not know. The overarching theme of the study is the presence or absence of B. maritima. Facilitation theory tells us that positive interactions are most often found under stressful conditions such as those on the coastal tidal flat of the Laguna Madre. Locally B. maritima has been found to …


Benchmarking And Parameter Sensitivity Of Physiological And Vegetation Dynamics Using The Functionally Assembled Terrestrial Ecosystem Simulator (Fates) At Barro Colorado Island, Panama, Charles D. Koven, Ryan G. Knox, Rosie A. Fisher, Jeffrey Q. Chambers, Bradley O. Christoffersen, Stuart J. Davies, Matteo Detto Jun 2020

Benchmarking And Parameter Sensitivity Of Physiological And Vegetation Dynamics Using The Functionally Assembled Terrestrial Ecosystem Simulator (Fates) At Barro Colorado Island, Panama, Charles D. Koven, Ryan G. Knox, Rosie A. Fisher, Jeffrey Q. Chambers, Bradley O. Christoffersen, Stuart J. Davies, Matteo Detto

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Plant functional traits determine vegetation responses to environmental variation, but variation in trait values is large, even within a single site. Likewise, uncertainty in how these traits map to Earth system feedbacks is large. We use a vegetation demographic model (VDM), the Functionally Assembled Terrestrial Ecosystem Simulator (FATES), to explore parameter sensitivity of model predictions, and comparison to observations, at a tropical forest site: Barro Colorado Island in Panama. We define a single 12-dimensional distribution of plant trait variation, derived primarily from observations in Panama, and define plant functional types (PFTs) as random draws from this distribution. We compare several …


Potential Predictability Of Net Primary Production In The Ocean, Kristen M. Krumhardt, Nicole S. Lovenduski, Matthew C. Long, J. Y. Luo, K. Lindsay, S. Yeager, Cheryl S. Harrison Jun 2020

Potential Predictability Of Net Primary Production In The Ocean, Kristen M. Krumhardt, Nicole S. Lovenduski, Matthew C. Long, J. Y. Luo, K. Lindsay, S. Yeager, Cheryl S. Harrison

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Interannual variations in marine net primary production (NPP) contribute to the variability of available living marine resources, as well as influence critical carbon cycle processes. Here we provide a global overview of near-term (1 to 10 years) potential predictability of marine NPP using a novel set of initialized retrospective decadal forecasts from an Earth System Model. Interannual variations in marine NPP are potentially predictable in many areas of the ocean 1 to 3 years in advance, from temperate waters to the tropics, showing a substantial improvement over a simple persistence forecast. However, some regions, such as the subpolar Southern Ocean, …


Categorizing Zonal Productivity On The Continental Shelf With Nutrient-Salinity Ratios, Jongsun Kim, Piers Chapman, Gilbert Rowe, Steven F. Dimarco Jun 2020

Categorizing Zonal Productivity On The Continental Shelf With Nutrient-Salinity Ratios, Jongsun Kim, Piers Chapman, Gilbert Rowe, Steven F. Dimarco

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Highlights

  • Identifying riverine influence on productivity in the northern Gulf of Mexico
  • Use of nutrient/salinity plots to differentiate inputs from two rivers
  • Verifying Rowe-Chapman (2002) hypothesis with in situ data

Abstract

Coastal ocean productivity is often dependent on riverine sources of nutrients, yet it can be difficult to determine how far the influence of the river extends. The northern Gulf of Mexico (GOM) receives freshwater and nutrients discharged mainly from the Mississippi and Atchafalaya Rivers. We used nutrient/salinity relationships to (i) differentiate the nutrient inputs of the two rivers and (ii) determine the potential extent of the zones where productivity …


A New Species Of Chromis (Teleostei: Pomacentridae) From Mesophotic Coral Ecosystems Of Rapa Nui (Easter Island) And Salas Y Gomez, Chile, Bart Shepard, Hudson T. Pinheiro, Tyler A. Y. Phelps, Erin E. Easton, Alejandro Perez-Matus, Luiz A. Rocha May 2020

A New Species Of Chromis (Teleostei: Pomacentridae) From Mesophotic Coral Ecosystems Of Rapa Nui (Easter Island) And Salas Y Gomez, Chile, Bart Shepard, Hudson T. Pinheiro, Tyler A. Y. Phelps, Erin E. Easton, Alejandro Perez-Matus, Luiz A. Rocha

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

A new species of Chromis (Teleostei: Pomacentridae) is described from three specimens collected at 90 m depth in a mesophotic coral ecosystem at Rapa Nui, Chile. Chromis mamatapara, new species, can be distinguished from its congeners by the following combination of characters: dorsal-fin rays XIV,13–14; pectoral-fin rays 18–19, third from top of fin longest; tubed lateral-line scales 18; total gill rakers on first arch 30–32; vertebrae 11þ15; and by coloration of living specimens, especially the presence of a single, pronounced, white spot, roughly the same diameter as the orbit, located where the posterior base of the dorsal fin intersects the …


The Pantropical Response Of Soil Moisture To El Niño, Kurt C. Solander, Brent D. Newman, Alessandro Carloca De Araujo, Holly R. Barnard, Z. Carter Berry, Damien Bonal, Mario Bretfeld, Benoit Burban, Luiz Antonio Candido, Rolando Celleri, Jeffery Q. Chambers, Bradley O. Christoffersen May 2020

The Pantropical Response Of Soil Moisture To El Niño, Kurt C. Solander, Brent D. Newman, Alessandro Carloca De Araujo, Holly R. Barnard, Z. Carter Berry, Damien Bonal, Mario Bretfeld, Benoit Burban, Luiz Antonio Candido, Rolando Celleri, Jeffery Q. Chambers, Bradley O. Christoffersen

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The 2015–2016 El Niño event ranks as one of the most severe on record in terms of the magnitude and extent of sea surface temperature (SST) anomalies generated in the tropical Pacific Ocean. Corresponding global impacts on the climate were expected to rival, or even surpass, those of the 1997–1998 severe El Niño event, which had SST anomalies that were similar in size. However, the 2015–2016 event failed to meet expectations for hydrologic change in many areas, including those expected to receive well above normal precipitation. To better understand how climate anomalies during an El Niño event impact soil moisture, …


Tipping Points Of Mississippi Delta Marshes Due To Accelerated Sea-Level Rise, Torbjörn E. Törnqvist, Krista L. Jankowski, Yong-Xiang Li, Juan L. Gonzalez May 2020

Tipping Points Of Mississippi Delta Marshes Due To Accelerated Sea-Level Rise, Torbjörn E. Törnqvist, Krista L. Jankowski, Yong-Xiang Li, Juan L. Gonzalez

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Coastal marshes are threatened by relative sea-level (RSL) rise, yet recent studies predict marsh survival even under the high rates of RSL rise expected later in this century. However, because these studies are mostly based on short-term records, uncertainty persists about the longer-term vulnerability of coastal marshes. We present an 8500-year-long marsh record from the Mississippi Delta, showing that at rates of RSL rise exceeding 6 to 9 mm year−1, marsh conversion into open water occurs in about 50 years. At rates of RSL rise exceeding ~3 mm year−1, marsh drowning occurs within a few centuries. Because present-day rates of …


Detection And Enumeration Of Bacterial Pathogens In The American Oyster (Crassostrea Virginica), Mohammad Maruf Billah May 2020

Detection And Enumeration Of Bacterial Pathogens In The American Oyster (Crassostrea Virginica), Mohammad Maruf Billah

Theses and Dissertations

American oyster (Crassostrea virginica) is a popular seafood for its delicacy and high nutritional value. Based on increasing concern about contamination of bacterial pathogens in raw oyster, my research objectives have been focused on detection and enumeration of two important bacterial pathogens, Escherichia coli and Salmonella spp. in the American oyster in south Texas waters, local markets and controlled laboratory studies. Immunohistochemical and RT-PCR analyses showed substantial bacterial pathogen’s presence in gills and digestive glands of oysters collected from San Martin Lake and South Padre Island as well as local markets. Laboratory studies showed increasing trend of both …


Wildlife Use Of Road Mitigation Structures In Relation To Their Construction, Structural Characteristics, And Environmental Factors Along A South Texas Highway, Anna D. Rivera Roy May 2020

Wildlife Use Of Road Mitigation Structures In Relation To Their Construction, Structural Characteristics, And Environmental Factors Along A South Texas Highway, Anna D. Rivera Roy

Theses and Dissertations

Roads are known to negatively impact wildlife by fragmenting habitat and mortality caused by wildlife-vehicle collisions. Road mitigation structures, such as wildlife crossing structures (WCS), wildlife guards (WG), and fencing are commonly used to address the issue of roads. In South Texas, such structures were built or modified along State Highway (SH) 100 in Cameron County as an effort to conserve the endangered ocelot (Leopardus pardalis). Camera traps were deployed to monitor these structures as a way to assess their effectiveness in restricting wildlife entry into the roadway with fencing and WG and conveying wildlife movement across roads …


Survival Of Off-Host Rhipicephalus (Boophilus) Annulatus (Acari: Ixodidae) Larvae In Study Arenas In Relation To Climatic Factors And Habitats In South Texas, Usa, Emily Jesselle Zamora May 2020

Survival Of Off-Host Rhipicephalus (Boophilus) Annulatus (Acari: Ixodidae) Larvae In Study Arenas In Relation To Climatic Factors And Habitats In South Texas, Usa, Emily Jesselle Zamora

Theses and Dissertations

The cattle fever tick, Rhipicephalus (Boophilus) annulatus (Say), is an economically destructive arthropod because of its ability to vector bovine babesiosis. Cattle fever ticks can spend more than 90% of their life cycle as questing larvae, but the effect of climatic factors on their off-host behavior and survival is unclear. The goal of this study was to measure the effects of specific ecological factors on off-host larvae in nature. The study was conducted in a south Texas pasture over a 20-mo period, during which time larval populations were surveyed and ambient weather variables - relative humidity and temperatures – were …


Effects Of Artificial Substrates On The Recruitment Of Juvenile Fishes In The Northwestern Gulf Of Mexico, Stefany Salinas May 2020

Effects Of Artificial Substrates On The Recruitment Of Juvenile Fishes In The Northwestern Gulf Of Mexico, Stefany Salinas

Theses and Dissertations

Most artificial reefs (ARs) in the Gulf of Mexico are considered intermediate to high vertical relief structures which have recruited large predatory species indicating lack of juvenile habitat. Small, inexpensive ARs, standard monitoring units for the recruitment of reef fish (SMURFs), were deployed at eight sites at -20m as habitat for juvenile fishes to understand and determine the effects of substrate type on juvenile fishes recruitment. Each site contained four SMURFs with four treatments: small and large rubble (~10 and ~20cm), oyster shells, and bare. Surveys yielded 39 juvenile species, including one of the most economically important species, Lutjanus campechanus, …


Complete Mitochondrial Genome Of Carijoa Riisei (Duchassaing & Michelotti, 1860) (Octocorallia: Alcyonacea: Stolonifera: Clavulariidae), Erin E. Easton, David Hicks Apr 2020

Complete Mitochondrial Genome Of Carijoa Riisei (Duchassaing & Michelotti, 1860) (Octocorallia: Alcyonacea: Stolonifera: Clavulariidae), Erin E. Easton, David Hicks

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

We report the first complete Stolonifera mitochondrial genome. Carijoa riisei (Duchassaing & Michelotti, 1860) isolate CLP2_A03 was collected by scuba at 32 m on the USTS Texas Clipper (27° 53.7827′N, 93° 36.2702′W). The complete mitogenome has the ancestral octocoral gene order for its 14 protein-coding genes, two rRNA genes, and one tRNA gene. It is 18,714 bp (30.7% A, 15.8% C, 18.8% G, and 34.7% T). Of the Alcyonacea mitogenomes published to date, it is most genetically similar (94% uncorrected) to Sinularia ceramensis Verseveldt, 1977 (NC_044122).