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- Keyword
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- Computer Science--Machine learning (3)
- 3d point cloud processing (1)
- Angiography (1)
- Bias (1)
- Cardiovascular (1)
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- Clinical Text Summarization, Multi-Objective Optimization, Transformers, Heart Failure, Named Entity Recognition, Knowledge Bases, Factual Accurac (1)
- Cognitive load (1)
- Comobidites (1)
- Computational fluid dynamics (CFD) (1)
- Computational fluid dynamics (1)
- Computer Science--Computaiton and Language (1)
- Computer Science--Machine Learning (1)
- Convolutional neural networks (1)
- Convolutional neural networks (CNN) (1)
- Delaunay triangulation (1)
- Dye perfusion (1)
- Electrodermal activity (1)
- Flow velocity (1)
- Galvanic skin response (1)
- Heart Failure (1)
- Heart beat (1)
- Hemodynamics (1)
- Iterative Closest Point (1)
- Least absolute shrinkage and selection operator (LASSO) (1)
- Logistic regression analysis (1)
- Machine learning (1)
- Machine learning (ML) (1)
- Machine learning (ML), convolutional neural networks (CNN), computational fluid dynamics (CFD), optical flow method (OFM), dye perfusion, hemodynamics, least absolute shrinkage and selection operator (LASSO), angiography, cardiovascular, particle image velocimetry (PIV) (1)
- Mental effort (1)
- Nearest neighbor search (1)
Articles 1 - 9 of 9
Full-Text Articles in Physical Sciences and Mathematics
Machine Learning For Angiography-Based Blood Flow Velocity Prediction, Swati Padhee, Mark Johnson, Hang Yi, Tanvi Banerjee, Zifeng Yang
Machine Learning For Angiography-Based Blood Flow Velocity Prediction, Swati Padhee, Mark Johnson, Hang Yi, Tanvi Banerjee, Zifeng Yang
Computer Science and Engineering Faculty Publications
Computational fluid dynamics (CFD) is widely employed to predict hemodynamic characteristics in arterial models, while not friendly to clinical applications due to the complexity of numerical simulations. Alternatively, this work proposed a framework to estimate hemodynamics in vessels based on angiography images using machine learning (ML) algorithms. First, the iodine contrast perfusion in blood was mimicked by a flow of dye diffusing into water in the experimentally validated CFD modeling. The generated projective images from simulations imitated the counterpart of light passing through the flow field as an analogy of X-ray imaging. Thus, the CFD simulation provides both the ground …
Machine Learning For Aiding Blood Flow Velocity Estimation Based On Angiography, Swati Padhee, Mark Johnson, Hang Yi, Tanvi Banerjee, Zifeng Yang
Machine Learning For Aiding Blood Flow Velocity Estimation Based On Angiography, Swati Padhee, Mark Johnson, Hang Yi, Tanvi Banerjee, Zifeng Yang
Computer Science and Engineering Faculty Publications
Computational fluid dynamics (CFD) is widely employed to predict hemodynamic characteristics in arterial models, while not friendly to clinical applications due to the complexity of numerical simulations. Alternatively, this work proposed a framework to estimate hemodynamics in vessels based on angiography images using machine learning (ML) algorithms. First, the iodine contrast perfusion in blood was mimicked by a flow of dye diffusing into water in the experimentally validated CFD modeling. The generated projective images from simulations imitated the counterpart of light passing through the flow field as an analogy of X-ray imaging. Thus, the CFD simulation provides both the ground …
Toward Mental Effort Measurement Using Electrodermal Activity Features, William Romine, Noah Schroeder, Tanvi Banerjee, Josephine Graft
Toward Mental Effort Measurement Using Electrodermal Activity Features, William Romine, Noah Schroeder, Tanvi Banerjee, Josephine Graft
Computer Science and Engineering Faculty Publications
The ability to monitor mental effort during a task using a wearable sensor may improve productivity for both work and study. The use of the electrodermal activity (EDA) signal for tracking mental effort is an emerging area of research. Through analysis of over 92 h of data collected with the Empatica E4 on a single participant across 91 different activities, we report on the efficacy of using EDA features getting at signal intensity, signal dispersion, and peak intensity for prediction of the participant's self-reported mental effort. We implemented the logistic regression algorithm as an interpretable machine learning approach and found …
Leveraging Natural Learning Processing To Uncover Themes In Clinical Notes Of Patients Admitted For Heart Failure, Ankita Agarwal, Krishnaprasad Thirunarayan, William Romine, Amanuel Alambo, Mia Cajita, Tanvi Banerjee
Leveraging Natural Learning Processing To Uncover Themes In Clinical Notes Of Patients Admitted For Heart Failure, Ankita Agarwal, Krishnaprasad Thirunarayan, William Romine, Amanuel Alambo, Mia Cajita, Tanvi Banerjee
Computer Science and Engineering Faculty Publications
Heart failure occurs when the heart is not able to pump blood and oxygen to support other organs in the body as it should. Treatments include medications and sometimes hospitalization. Patients with heart failure can have both cardiovascular as well as non-cardiovascular comorbidities. Clinical notes of patients with heart failure can be analyzed to gain insight into the topics discussed in these notes and the major comorbidities in these patients. In this regard, we apply machine learning techniques, such as topic modeling, to identify the major themes found in the clinical notes specific to the procedures performed on 1,200 patients …
Improving The Factual Accuracy Of Abstractive Clinical Text Summarization Using Multi-Objective Optimization, Amanuel Alambo, Tanvi Banerjee, Krishnaprasad Thirunarayan, Mia Cajita
Improving The Factual Accuracy Of Abstractive Clinical Text Summarization Using Multi-Objective Optimization, Amanuel Alambo, Tanvi Banerjee, Krishnaprasad Thirunarayan, Mia Cajita
Computer Science and Engineering Faculty Publications
While there has been recent progress in abstractive summarization as applied to different domains including news articles, scientific articles, and blog posts, the application of these techniques to clinical text summarization has been limited. This is primarily due to the lack of large-scale training data and the messy/unstructured nature of clinical notes as opposed to other domains where massive training data come in structured or semi -structured form. Further, one of the least explored and critical components of clinical text summarization is factual accuracy of clinical summaries. This is specifically crucial in the healthcare domain, cardiology in particular, where an …
Improving Pain Assessment Using Vital Signs And Pain Medication For Patients With Sickle Cell Disease: Retrospective Study, Swati Padhee, Gary K. Nave Jr, Tanvi Banerjee, Daniel M. Abrams, Nirmish Shah
Improving Pain Assessment Using Vital Signs And Pain Medication For Patients With Sickle Cell Disease: Retrospective Study, Swati Padhee, Gary K. Nave Jr, Tanvi Banerjee, Daniel M. Abrams, Nirmish Shah
Computer Science and Engineering Faculty Publications
Background: Sickle cell disease (SCD) is the most common inherited blood disorder affecting millions of people worldwide. Most patients with SCD experience repeated, unpredictable episodes of severe pain. These pain episodes are the leading cause of emergency department visits among patients with SCD and may last for several weeks. Arguably, the most challenging aspect of treating pain episodes in SCD is assessing and interpreting a patient's pain intensity level. Objective: This study aims to learn deep feature representations of subjective pain trajectories using objective physiological signals collected from electronic health records. Methods: This study used electronic health record data collected …
Entity-Driven Fact-Aware Abstractive Summarization Of Biomedical Literature, Amanuel Alambo, Tanvi Banerjee, Krishnaprasad Thirunarayan, Michael Raymer
Entity-Driven Fact-Aware Abstractive Summarization Of Biomedical Literature, Amanuel Alambo, Tanvi Banerjee, Krishnaprasad Thirunarayan, Michael Raymer
Computer Science and Engineering Faculty Publications
As part of the large number of scientific articles being published every year, the publication rate of biomedical literature has been increasing. Consequently, there has been considerable effort to harness and summarize the massive amount of biomedical research articles. While transformer-based encoder-decoder models in a vanilla source document-to-summary setting have been extensively studied for abstractive summarization in different domains, their major limitations continue to be entity hallucination (a phenomenon where generated summaries constitute entities not related to or present in source article(s)) and factual inconsistency. This problem is exacerbated in a biomedical setting where named entities and their semantics (which …
An Interactive Game With Virtual Reality Immersion To Improve Cultural Sensitivity In Healthcare, Paul J. Hershberger, Yong Pei, Timothy N. Crawford, Sabrina M. Neeley, Thomas Wischgoll, Dixit B. Patel, Miteshkumar M. Vasoya, Angie Castle, Sankalp Mishra, Lahari Surapaneni, Aman A. Pogaku, Aishwarya Bositty, Todd Pavlack
An Interactive Game With Virtual Reality Immersion To Improve Cultural Sensitivity In Healthcare, Paul J. Hershberger, Yong Pei, Timothy N. Crawford, Sabrina M. Neeley, Thomas Wischgoll, Dixit B. Patel, Miteshkumar M. Vasoya, Angie Castle, Sankalp Mishra, Lahari Surapaneni, Aman A. Pogaku, Aishwarya Bositty, Todd Pavlack
Computer Science and Engineering Faculty Publications
Purpose: Biased perceptions of individuals who are not part of one’s in-groups tend to be negative and habitual. Because health care professionals are no less susceptible to biases than are others, the adverse impact of biases on marginalized populations in health care warrants continued attention and amelioration. Method: Two characters, a Syrian refugee with limited English proficiency and a black pregnant woman with a history of opioid use disorder, were developed for an online training simulation that includes an interactive life course experience focused on social determinants of health, and a clinical encounter in a community health center utilizing virtual …
Delaunay Walk For Fast Nearest Neighbor: Accelerating Correspondence Matching For Icp, James D. Anderson, Ryan M. Raettig, Josh Larson, Scott L. Nykl, Clark N. Taylor, Thomas Wischgoll
Delaunay Walk For Fast Nearest Neighbor: Accelerating Correspondence Matching For Icp, James D. Anderson, Ryan M. Raettig, Josh Larson, Scott L. Nykl, Clark N. Taylor, Thomas Wischgoll
Computer Science and Engineering Faculty Publications
Point set registration algorithms such as Iterative Closest Point (ICP) are commonly utilized in time-constrained environments like robotics. Finding the nearest neighbor of a point in a reference 3D point set is a common operation in ICP and frequently consumes at least 90% of the computation time. We introduce a novel approach to performing the distance-based nearest neighbor step based on Delaunay triangulation. This greedy algorithm finds the nearest neighbor of a query point by traversing the edges of the Delaunay triangulation created from a reference 3D point set. Our work integrates the Delaunay traversal into the correspondences search of …