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Full-Text Articles in Physical Sciences and Mathematics

Compact Hardware Implementation Of A Sha-3 Core For Wireless Body Sensor Networks, Yi Yang, Debiao He, Neeraj Kumar, Sherali Zeadally Jul 2018

Compact Hardware Implementation Of A Sha-3 Core For Wireless Body Sensor Networks, Yi Yang, Debiao He, Neeraj Kumar, Sherali Zeadally

Information Science Faculty Publications

One of the most important Internet of Things applications is the wireless body sensor network (WBSN), which can provide universal health care, disease prevention, and control. Due to large deployments of small scale smart sensors in WBSNs, security, and privacy guarantees (e.g., security and safety-critical data, sensitive private information) are becoming a challenging issue because these sensor nodes communicate using an open channel, i.e., Internet. We implement data integrity (to resist against malicious tampering) using the secure hash algorithm 3 (SHA-3) when smart sensors in WBSNs communicate with each other using the Internet. Due to the limited resources (i.e., storage, …


Progressive Network Deployment, Performance, And Control With Software-Defined Networking, Daniel J. Casey Mar 2018

Progressive Network Deployment, Performance, And Control With Software-Defined Networking, Daniel J. Casey

Theses and Dissertations

The inflexible nature of traditional computer networks has led to tightly-integrated systems that are inherently difficult to manage and secure. New designs move low-level network control into software creating software-defined networks (SDN). Augmenting an existing network with these enhancements can be expensive and complex. This research investigates solutions to these problems. It is hypothesized that an add-on device, or "shim" could be used to make a traditional switch behave as an OpenFlow SDN switch while maintaining reasonable performance. A design prototype is found to cause approximately 1.5% reduction in throughput for one ow and less than double increase in latency, …


Highly Accurate And Sensitive Short Read Aligner, Mehmet Yağmur Gök, Sezer Gören Uğurdağ, Cem Ünsalan, Mahmut Şami̇l Sağiroğlu Jan 2018

Highly Accurate And Sensitive Short Read Aligner, Mehmet Yağmur Gök, Sezer Gören Uğurdağ, Cem Ünsalan, Mahmut Şami̇l Sağiroğlu

Turkish Journal of Electrical Engineering and Computer Sciences

Next-generation sequencing generates large numbers of short reads from DNA. This makes it difficult to process and store. Therefore, efficient sequence alignment and mapping techniques are needed in bioinformatics. Alignment and mapping are the basic steps involved in genetic data analysis. The Smith-Waterman (SW) algorithm, a well-known dynamic programming algorithm, is often used for this purpose. In this work, we propose to utilize Phred quality scores in Gotoh's affine gap model to increase the accuracy and sensitivity of the SW algorithm. Hardware platforms such as FPGAs and GPUs are commonly used to solve computationally expensive problems. In this work, a …


A Proposed Approach To Hybrid Software-Hardware Application Design For Enhanced Application Performance, Alex Shipman Jan 2018

A Proposed Approach To Hybrid Software-Hardware Application Design For Enhanced Application Performance, Alex Shipman

Graduate Theses and Dissertations

One important aspect of many commercial computer systems is their performance; therefore, system designers seek to improve the performance next-generation systems with respect to previous generations. This could mean improved computational performance, reduced power consumption leading to better battery life in mobile devices, smaller form factors, or improvements in many areas. In terms of increased system speed and computation performance, processor manufacturers have been able to increase the clock frequency of processors up to a point, but now it is more common to seek performance gains through increased parallelism (such as a processor having more processor cores on a single …