Physical Sciences and Mathematics Commons^™

Enabling An Equitable Energy Transition Through Inclusive Research, Michael Ash, Erin Baker, Mark Tuominen, Dhandapani Venkataraman, Matthew Burke, S. Castellanos, M. Cha, Gabe Chan, D. Djokic, J.C. Ford, Anna P. Goldstein, David Hsu, Matt Lacker, C. Miller, D. Nock, A.P. Ravikumar, Allison Bates, Anna Stefanopoulou, E Grubert, D.M Kammen, M. Pastor, S.Z, Attari, S. Carley, D.L Clark, D. Dean-Ryan, U. Kosar, Kerry Bowie, Tina Johnson

ETI Publications

Comprehensive and meaningful inclusion of marginalized communities within the research enterprise will be critical to ensuring an equitable, technology-informed, clean energy transition. We provide five key action items for government agencies and philanthropic institutions to operationalize the commitment to an equitable energy transition.

Evidence For The Role Of Cyp51a And Xenobiotic Detoxification In Differential Sensitivity To Azole Fungicides In Boxwood Blight Pathogens, Stefanos Stravoravdis, Robert E. Marra, Nicholas R. Leblanc, Joanne Crouch, Jonathan P. Hulvey

Microbiology Department Faculty Publication Series

Boxwood blight, a fungal disease of ornamental plants (Buxus spp.), is caused by two sister species, Calonectria pseudonaviculata (Cps) and C. henricotiae (Che). Compared to Cps, Che is documented to display reduced sensitivity to fungicides, including the azole class of antifungals, which block synthesis of a key fungal membrane component, ergosterol. A previous study reported an ergosterol biosynthesis gene in Cps, CYP51A, to be a pseudogene, and RNA-Seq data confirm that a functional CYP51A is expressed only in Che. The lack of additional ergosterol biosynthesis genes showing significant differential expression suggests that the functional CYP51A in Che could contribute to …

Raising Dielectric Permittivity Mitigates Dopant-Induced Disorder In Conjugated Polymers, Meenakshi Upadhyaya, Michael Lu-Díaz, Subhayan Samanta, Muhammad Abdullah, Keith Dusoe, Kevin R. Kittilstved, Dhandapani Venkataraman, Zlatan Akšamija

Electrical and Computer Engineering Faculty Publication Series

Conjugated polymers need to be doped to increase charge carrier density and reach the electrical conductivity necessary for electronic and energy applications. While doping increases carrier density, Coulomb interactions between the dopant molecules and the localized carriers are poorly screened, causing broadening and a heavy tail in the electronic density-of-states (DOS). The authors examine the effects of dopant-induced disorder on two complimentary charge transport properties of semiconducting polymers, the Seebeck coefficient and electrical conductivity, and demonstrate a way to mitigate them. Their simulations, based on a modified Gaussian disorder model with Miller-Abrahams hopping rates, show that dopant-induced broadening of the …

Effective And Selective Dna Modification On Bacterial Membranes, Qian Tian, Yousef Bagheri, Puspam Keshri, Rigumula Wu, Kewei Ren, Qikun Yu, Mingxu You

Chemistry Department Faculty Publication Series

With highly precise self-assembly and programmability, DNA has been widely used as a versatile material in nanotechnology and synthetic biology. Recently, DNA-based nanostructures and devices have been engineered onto eukaryotic cell membranes for various exciting applications in the detection and regulation of cell functions. While in contrast, the potential of applying DNA nanotechnology for bacterial membrane studies is still largely underexplored, which is mainly due to the lack of tools to modify DNA on bacterial membranes. Herein, using lipid-DNA conjugates, we have developed a simple, fast, and highly efficient system to engineer bacterial membranes with designer DNA molecules. We have …

Polymeric Nanoparticles Active Against Dual-Species Bacterial Biofilms, Jessa Marie V. Makabenta, Jungmi Park, Cheng-Hsuan Li, Aritra Nath Chattopadhyay, Ahmed Nabawy, Ryan F. Landis, Akash Gupta, Suzannah Schmidt-Malan, Robin Patel, Vincent M. Rotello

Chemistry Department Faculty Publication Series

Biofilm infections are a global public health threat, necessitating new treatment strategies. Biofilm formation also contributes to the development and spread of multidrug-resistant (MDR) bacterial strains. Biofilm-associated chronic infections typically involve colonization by more than one bacterial species. The co-existence of multiple species of bacteria in biofilms exacerbates therapeutic challenges and can render traditional antibiotics ineffective. Polymeric nanoparticles offer alternative antimicrobial approaches to antibiotics, owing to their tunable physico-chemical properties. Here, we report the efficacy of poly(oxanorborneneimide) (PONI)-based antimicrobial polymeric nanoparticles (PNPs) against multi-species bacterial biofilms. PNPs showed good dual-species biofilm penetration profiles as confirmed by confocal laser scanning microscopy. …

Exogenous Introduction Of Initiator And Executioner Caspases Results In Different Apoptotic Outcomes, Francesca Anson, S Thayumanavan, Jeanne A. Hardy

Chemistry Department Faculty Publication Series

The balance of pro-apoptotic and pro-survival proteins defines a cell's fate. These processes are controlled through an interdependent and finely tuned protein network that enables survival or leads to apoptotic cell death. The caspase family of proteases is central to this apoptotic network, with initiator and executioner caspases, and their interaction partners, regulating and executing apoptosis. In this work, we interrogate and modulate this network by exogenously introducing specific initiator or executioner caspase proteins. Each caspase is exogenously introduced using redox-responsive polymeric nanogels. Although caspase-3 might be expected to be the most effective due to the centrality of its role …

A Synergistic Anti-Diabetic Effect By Ginsenosides Rb1 And Rg3 Through Adipogenic And Insulin Signaling Pathways In 3t3-L1 Cells, Hee-Do Hong, Sun-Il Choi, Ok-Hwan Lee, Young-Cheul Kim

Nutrition Department Faculty Publication Series

Although ginsenosides Rb1 and Rg3 have been identified as the significant ginsenosides found in red ginseng that confer anti-diabetic actions, it is unclear whether insulin-sensitizing effects are mediated by the individual compounds or by their combination. To determine the effect of ginsenosides Rb1 and Rg3 on adipocyte differentiation, 3T3-L1 preadipocytes were induced to differentiate the standard hormonal inducers in the absence or presence of ginsenosides Rb1 or Rg3. Additionally, we determined the effects of Rb1, Rg3, or their combination on the expression of genes related to adipocyte differentiation, adipogenic transcription factors, and the insulin signaling pathway in 3T3-L1 cells using …

Persistent Radical Anion Polymers Based On Naphthalenediimide And A Vinylene Spacer, Sashi Debnath, Connor J. Boyle, Dongming Zhou, Bryan M. Wong, Kevin R. Kittilstved, Dhandapani Venkataraman

Chemistry Department Faculty Publication Series

Persistent n-doped conjugated polymers were achieved by doping the electron accepting PDNDIV and PFNDIVpolymers with ionic (TBACN) or neutral (TDAE) dopants. The great electron affinities, as indicated by the low LUMO levels of PDNDIV (−4.09 eV) and PFNDIV (−4.27 eV), facilitated the chemical reduction from either TBACN or TDAE. The low-lying LUMOs of the neutral polymers PDNDIV and PFNDIV were achieved by incorporation of vinylene spacers between the electron poor NDI units to increase the conjugation length without the use of an electron donor, and this was lowered further by an electron-withdrawing fluorinated N-substituent on the NDI moiety. The …

3' End Additions By T7 Rna Polymerase Are Rna Self-Templated, Distributive And Diverse In Character––Rna-Seq Analyses, Yasaman Gholamalipour, Aruni K. Mudiyanselage, Craig T. Martin

Chemistry Department Faculty Publication Series

Synthetic RNA is widely used in basic science, nanotechnology and therapeutics research. The vast majority of this RNA is synthesized in vitro by T7 RNA polymerase or one of its close family members. However, the desired RNA is generally contaminated with products longer and shorter than the DNA-encoded product. To better understand these undesired byproducts and the processes that generate them, we analyze in vitro transcription reactions using RNA-Seq as a tool. The results unambiguously confirm that product RNA rebinds to the polymerase and self-primes (in cis) generation of a hairpin duplex, a process that favorably competes with promoter driven …

High Energy Density In Azobenzene-Based Materials For Photo-Thermal Batteries Via Controlled Polymer Architecture And Polymer-Solvent Interactions, Seung Pyo Jeong, Lawrence A. Renna, Connor J. Boyle, Hyunwook S. Kwak, Edward Harder, Wolfgang Damm, Dhandapani Venkataraman

Chemistry Department Faculty Publication Series

Energy densities of ~510 J/g (max: 698 J/g) have been achieved in azobenzene-based syndiotactic-rich poly(methacrylate) polymers. The processing solvent and polymer-solvent interactions are important to achieve morphologically optimal structures for high-energy density materials. This work shows that morphological changes of solid-state syndiotactic polymers, driven by different solvent processings play an important role in controlling the activation energy of Z-E isomerization as well as the shape of the DSC exotherm. Thus, this study shows the crucial role of processing solvents and thin film structure in achieving higher energy densities.

Comparative Study Of Multicellular Tumor Spheroid Formation Methods And Implications For Drug Screening, Maria F. Gencoglu, Lauren E. Barney, Christopher L. Hall, Elizabeth A. Brooks, Alyssa D. Schwartz, Daniel C. Corbett, Kelly R. Stevens, Shelly Peyton

Chemical Engineering Faculty Publication Series

Improved in vitro models are needed to better understand cancer progression and bridge the gap between in vitro proof-of-concept studies, in vivo validation, and clinical application. Multicellular tumor spheroids (MCTS) are a popular method for three-dimensional (3D) cell culture, because they capture some aspects of the dimensionality, cell–cell contact, and cell–matrix interactions seen in vivo. Many approaches exist to create MCTS from cell lines, and they have been used to study tumor cell invasion, growth, and how cells respond to drugs in physiologically relevant 3D microenvironments. However, there are several discrepancies in the observations made of cell behaviors when comparing …

2016 Newsletter, Julian Tyson, Kevin Griffith

STEM Education Institute Newsletters

PVSTEMNet Update, Pg. 2

Arsenic Education, Pg. 3-6

UMass Biotech Initiatives, Pg. 7-8

BioTeach Program, Pg. 9

NSTA Award, Pg. 10

Cosmos Course, Pg.11

Humor and Climate, Pg. 12-13

More Cli-Sci Fiction, Pg. 14

Science and Engineering Saturday Seminars, Pg. 15-16

Tuesday Talks, Pg. 17-18

Carbon Nanotubes And Graphene As Additives In 3d Printing, Lara A. Al-Hariri, Branden Leonhardt, Mesopotamia Nowotarski, James Magi, Kaelynn Chambliss, Thaís Venzel, Sagar Delekar, Steve Acquah

Chemistry Department Faculty Publication Series

3D printing is a revolutionary technology for the consumer and industrial markets. As the technology for 3D printing has expanded, the need for multi-materials that support fused deposition modeling and other forms of additive manufacturing is increasing. 3D printing filaments infused with carbon nanotubes and graphene are now commercially available, with the promise of producing conductive composites. This chapter explores some of the research, products, and challenges involved in bringing the next generation of functional printing materials to the consumer market.

Where To Buy Materials For The Activities, Morton Sternheim

Nanotechnology Teacher Summer Institutes

Sources for some of the less common materials used in the activities.

Seeing At The Nanoscale: New Microscopies For The Life Sciences, Jennifer Ross

Nanotechnology Teacher Summer Institutes

Visualizing single modules with fluorescence microscopy

Integrating Arsenic-Related Environmental Topics Into The Education Of The Next Generation Of Citizens For Arsenic-Hit Communities: Awareness And Mobilization, Julian Tyson

Chemistry Department Faculty Publication Series

No abstract provided.

Immobilization Of Scandium And Other Chemical Elements In Systems With Aquatic Macrophyte, S. A. Ostroumov, M. E. Johnson, Julian Tyson, B. Xing

Chemistry Department Faculty Publication Series

No abstract provided.

Evaluation Report, Alan Peterfreund

STEM Digital

This evaluation report synthesizes the results of evaluation activities conducted by SageFox Consulting Group of the STEM DIGITAL project led by the UMass STEM Ed Institute for its no-cost extension year, covering the period September 2013 to August 2014. The goals of the program are to facilitate the participants’ abilities to stimulate student interest in STEM careers while engaging them in ways to think critically about their environment. Participating teachers incorporated digital cameras and Analyzing Digital Images (ADI) software into lab activities focusing on environmental science. STEM DIGITAL materials focused on three strands related to (1) ozone and air quality, …

Push-Pull Molecules: Models And Polymer Building Blocks For Organic Photovoltaic Applications, Raymond Devaughn

Masters Theses 1911 - February 2014

Several fluorenone alkynyl based oligo conjugated molecules were synthesized and characterized. Most compounds exhibited UV-Vis absorption onset at ca. 500 nm and a PL emission onset of ~329-370 nm, with excimer emission suspected from most systems near ~530-560 nm. Experimentally determined E_HOMO and E_LUMO energies range from -6.02 to -5.73 eV and -3.47 and 3.55 eV, respectively, with the lowest experimental E_g lying at -2.26 eV for 2-(trimethoxyphenylacetylene)-fluorenone. Cyclic voltammetry indicates quasi-reversible reduction for all systems, with 2,7-bis(nitrophenylacetylene)fluorenone exhibiting a high reduction potential of -1.25 eV. Only 2,7-bis(trimethoxyphenylacetylene)fluorenone exhibited a quasi-reversible oxidation, due to electron rich methoxy …

2013-2014 Newsletter, Morton Sternheim

STEM Education Institute Newsletters

Patterns Workshop

iCons

New! MassBioEd Seminars

Arsenic: Citizen Science

STEM DIGITAL online

Nanotechnology

Keeping Track Of Our Arsenic Intake: A Possible Citizen-Science Project, Julian Tyson

Chemistry Department Faculty Publication Series

No abstract provided.

Non-Chromatographic Speciation Of Inorganic Arsenic By Atomic Fluorescence Spectrometry With Flow Injection Hydride Generation With A Tetrahydroborate-Form Anion-Exchanger, N. Wang, Julian Tyson

Chemistry Department Faculty Publication Series

No abstract provided.

Sorafenib Resistance And Jnk Signaling In Carcinoma During Extracellular Matrix Stiffening, Thuy V. Nguyen, Marianne Sleiman, Timothy Moriarty, William G. Herrick, Shelly Peyton

Chemical Engineering Faculty Publication Series

Tumor progression is coincident with mechanochemical changes in the extracellular matrix (ECM). We hypothesized that tumor stroma stiffening, alongside a shift in the ECM composition from a basement membrane-like microenvironment toward a dense network of collagen-rich fibers during tumorigenesis, confers resistance to otherwise powerful chemotherapeutics. To test this hypothesis, we created a high-throughput drug screening platform based on our poly(ethylene glycol)-phosphorylcholine (PEG-PC) hydrogel system, and customized it to capture the stiffness and integrin-binding profile of in vivo tumors. We report that the efficacy of a Raf kinase inhibitor, sorafenib, is reduced on stiff, collagen-rich microenvironments, independent of ROCK activity. Instead, …

Resin Volatiles Of Eastern Hemlock Induced By Its Non-Native Herbivores, Joshua D. Pezet

Masters Theses 1911 - February 2014

Eastern hemlock (Tsuga canadensis) is in decline because of infestation by the invasive hemlock woolly adelgid (Adelges tsugae; ‘HWA’) and, to a lesser extent, the elongate hemlock scale (Fiorinia externa; ‘EHS’). Many conifers respond to insect herbivory by inducing oleoresin-based defenses, however it is unknown whether eastern hemlock is capable of this inducible response. We conducted a plantation setting study of artificially infested saplings to determine if feeding by HWA or EHS induces changes in the tree’s volatile chemistry. The induced changes in volatiles we found were unlike the terpenoid-based defenses of related conifers. Only HWA feeding …

Trace Determination Of Total Mercury In Rice By Conventional Inductively Coupled Plasma Mass Spectrometry, Lindsay R. Drennan-Harris, Sirinapa Wongwilawan, Julian Tyson

Chemistry Department Faculty Publication Series

No abstract provided.

Determination Of Inorganic Arsenic In Water By A Quartz Crystal Microbalance, C Li, A. E. Basaran, Julian Tyson

Chemistry Department Faculty Publication Series

No abstract provided.

Dispersive Liquid–Liquid Microextraction And Microsample Injection System Coupled With Inductively Coupled Plasma-Mass Spectrometry For Inorganic Arsenic Speciation In Natural Waters, Latif Elci, Aydan Elci, Tiffany Berg, Julian Tyson

Chemistry Department Faculty Publication Series

No abstract provided.

Synthesis Of Monomers For New Conjugated Polymers, Kedar Girish Jadhav

Masters Theses 1911 - February 2014

ABSTRACT

SYNTHESIS OF MONOMERS FOR NEW CONJUGATED POLYMERS

This dissertation addresses the problem of synthesis of different monomers for donor and acceptor polymers in photovoltaic applications. In general, functionalization of conjugated polymers and understanding of molecular packing of electron donors and electron acceptors are very important to produce efficient solar cells. As a result, it is important to design and synthesize novel monomers which will require making new π-conjugated donors and acceptors polymers and understand the influence of these new polymers in bulk heterojunction to design polymer solar cells. In this study, two different monomers were synthesized. The first monomer …

A Paleoclimate Modeling Experiment To Calculate The Soil Carbon Respiration Flux For The Paleocene-Eocene Thermal Maximum, David M. Tracy

Masters Theses 1911 - February 2014

The Paleocene-Eocene Thermal Maximum (PETM) (55 million years ago) stands as the largest in a series of extreme warming (hyperthermal) climatic events, which are analogous to the modern day increase in greenhouse gas concentrations. Orbitally triggered (Lourens et al., 2005, Galeotti et al., 2010), the PETM is marked by a large (-3‰) carbon isotope excursion (CIE). Hypothesized to be methane driven, Zeebe et al., (2009) noted that a methane based release would only account for 3.5°C of warming. An isotopically heavier carbon, such as that of soil and C3 plants, has the potential to account for the …

Improving The Accuracy And Precision Of An Arsenic Field Test Kit: Increased Reaction Time And Digital Image Analysis, James Kearns, Julian Tyson

Chemistry Department Faculty Publication Series

No abstract provided.