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Biology

2006

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Full-Text Articles in Physical Sciences and Mathematics

Outcomes Of The Wetline Review. The Minister For Fisheries Proposed Decision For The Future Management Of The West Coast And Gascoyne Commercial 'Wetline' Fisheries, Department Of Fisheries Western Australia. Dec 2006

Outcomes Of The Wetline Review. The Minister For Fisheries Proposed Decision For The Future Management Of The West Coast And Gascoyne Commercial 'Wetline' Fisheries, Department Of Fisheries Western Australia.

Fisheries management papers

This document details my proposed decisions regarding the new management arrangements for the West Coast and Gascoyne commercial “wetline” fisheries. Before finalising my position on the new management arrangements for these fisheries I invite any final comments on the proposed arrangements set out in this document. Although specific issues have been identified, your views are sought on any or all of the matters in the document of significance to you and/or your group.


Central Dysregulation Of The Hypothalamic-Pituitary-Adrenal Axis In Neuron-Specific Proopiomelanocortin-Deficient Mice, James L. Smart, Virgine Tolle, Veronica Otero-Corchon, Malcolm J. Low Nov 2006

Central Dysregulation Of The Hypothalamic-Pituitary-Adrenal Axis In Neuron-Specific Proopiomelanocortin-Deficient Mice, James L. Smart, Virgine Tolle, Veronica Otero-Corchon, Malcolm J. Low

Faculty Publications - Department of Biological & Molecular Science

No abstract provided.


A Lake Restoration Plan For Furman Lake, Lake Restoration Task Force, Wade Worthen, Wes Dripps Oct 2006

A Lake Restoration Plan For Furman Lake, Lake Restoration Task Force, Wade Worthen, Wes Dripps

Furman Lake Restoration Book Gallery

A twelve page document submitted by The Lake Restoration Task Force. The document lists the members of the task force, gives an overview of the project, the current status at the time of submission, lays out a new vision for the lake, and a plan to improve the environmental integrity of the lake watershed, plus design elements to create a multi-purpose facility. It concludes with a section on the lake as pedagogy and recommendations for moving forward with the master plan.


Minutes: Council Meeting Oct 2006

Minutes: Council Meeting

Virginia Journal of Science

Minutes of the VAS Council meeting Friday May 26, 2006, 8 - 9:40 AM, at Skelton Conference Center Inn, Virginia Tech, Blacksburg VA. Minutes were edited for publication.


A Scoping Paper : Matters Relevant To The Development Of A Sustainable Allocation And Growout Modul For Western Lobster Pueruli, Department Of Fisheries Western Australia Oct 2006

A Scoping Paper : Matters Relevant To The Development Of A Sustainable Allocation And Growout Modul For Western Lobster Pueruli, Department Of Fisheries Western Australia

Fisheries management papers

This Scoping Paper has been prepared as a first step in the development of a management framework for a commercial western rock lobster puerulus growout aquaculture industry in Western Australia. The purpose of this Scoping Paper is to identify and scope the issues associated with the development of such an industry and to identify matters which should be considered in the development of a management framework.


An Automated Method For Rapid Identification Of Putative Gene Family Members In Plants, Ronald L. Frank, Ajay Mane, Fikret Erçal Sep 2006

An Automated Method For Rapid Identification Of Putative Gene Family Members In Plants, Ronald L. Frank, Ajay Mane, Fikret Erçal

Biological Sciences Faculty Research & Creative Works

Background: Gene duplication events have played a significant role in genome evolution, particularly in plants. Exhaustive searches for all members of a known gene family as well as the identification of new gene families has become increasingly important. Subfunctionalization via changes in regulatory sequences following duplication (adaptive selection) appears to be a common mechanism of evolution in plants and can be accompanied by purifying selection on the coding region. Such negative selection can be detected by a bias toward synonymous over nonsynonymous substitutions. However, the process of identifying this bias requires many steps usually employing several different software programs. We …


Waterfowl Management Plan, Lake Restoration Task Force, Wade Worthen, Wes Dripps Sep 2006

Waterfowl Management Plan, Lake Restoration Task Force, Wade Worthen, Wes Dripps

Furman Lake Restoration Book Gallery

A six page document submitted by The Lake Restoration Task Force. The document lists the members of the task force, gives an overview of waterfowl overpopulation at the Furman Lake, goals for the future, and the strategy to solve this problem. The document provides a specific implementation plan and concludes with an assessment of the plan.


Reflections On Wallace, Charles H. Smith Sep 2006

Reflections On Wallace, Charles H. Smith

DLPS Faculty Publications

An unpublished paper has recently come to light, which shows that even at an early age, Alfred Russel Wallace was bold enough to approach the scientific establishment with his ideas.


Microbial Growth And Biofilm Formation In Geologic Media Is Detected With Complex Conductivity Measurements, Caroline A. Davis, Estella A. Atekwana, Eliot A. Atekwana, Lee D. Slater, Silvia Rossbach, Melanie R. Mormile Sep 2006

Microbial Growth And Biofilm Formation In Geologic Media Is Detected With Complex Conductivity Measurements, Caroline A. Davis, Estella A. Atekwana, Eliot A. Atekwana, Lee D. Slater, Silvia Rossbach, Melanie R. Mormile

Geosciences and Geological and Petroleum Engineering Faculty Research & Creative Works

Complex conductivity measurements (0.1-1000 Hz) were obtained from biostimulated sand-packed columns to investigate the effect of microbial growth and biofilm formation on the electrical properties of porous media. Microbial growth was verified by direct microbial counts, pH measurements, and environmental scanning electron microscope imaging. Peaks in imaginary (interfacial) conductivity in the biostimulated columns were coincident with peaks in the microbial cell concentrations extracted from sands. However, the real conductivity component showed no discernible relationship to microbial cell concentration. We suggest that the observed dynamic changes in the imaginary conductivity (σ″) arise from the growth and attachment of microbial cells and …


The Localized Dynamics Of A Ca2+Channel (30-Minute Talk), Borbala Mazzag, Christoper Tignanelli, Gregory D. Smith Aug 2006

The Localized Dynamics Of A Ca2+Channel (30-Minute Talk), Borbala Mazzag, Christoper Tignanelli, Gregory D. Smith

Borbala Mazzag

No abstract provided.


Integrated Fisheries Management Draft Allocation Report Roe's Abalone Perth Metropolitan Region., Integrated Fisheries Allocation Advisory Committee Aug 2006

Integrated Fisheries Management Draft Allocation Report Roe's Abalone Perth Metropolitan Region., Integrated Fisheries Allocation Advisory Committee

Fisheries management papers

The IFAAC has prepared this report, which documents the committee’s initial position on allocations for the abalone resource, along with the reasons for its conclusions as a basis for widespread community consultation. This report follows the IFAAC’s preliminary investigation of the abalone resourcesharing issues and consultation with stakeholders


Remarks On The Stability Of Some Size-Structured Population Models I: Changes In Vital Rates Due To Population Only, Mohammed El-Doma Jun 2006

Remarks On The Stability Of Some Size-Structured Population Models I: Changes In Vital Rates Due To Population Only, Mohammed El-Doma

Applications and Applied Mathematics: An International Journal (AAM)

We consider a size-structured population model that has been studied in Calsina et al. (2003). We propose a different approach that provides direct stability results, and we correct a stability result given therein. In addition, we obtain global stability results that have not been given in Calsina et al. (2003).


The Environmental Impact Of Dietary Choice And Agriculture In California, Harold J. Marlow Jr. Jun 2006

The Environmental Impact Of Dietary Choice And Agriculture In California, Harold J. Marlow Jr.

Loma Linda University Electronic Theses, Dissertations & Projects

Food demand influences agricultural production. Modern agricultural practices have resulted in polluted soil, air and water, eroded soil, dependence on imported oil, and loss of biodiversity. The goal of this research is to investigate the environmental impact of pesticide and fertilizer application, water consumption, and energy used to produce commodities for a vegetarian and non vegetarian diet in California. The working assumption is that greater number and amount of inputs are associated with greater environmental impact. The literature supports this notion. To accomplish this goal, dietary preferences were quantified using the Adventist Health Study and state agricultural data were collected …


Analysis Of An Sirs Age-Structured Epidemic Model With Vaccination And Vertical Transmission Of Disease, Mohammed El-Doma Jun 2006

Analysis Of An Sirs Age-Structured Epidemic Model With Vaccination And Vertical Transmission Of Disease, Mohammed El-Doma

Applications and Applied Mathematics: An International Journal (AAM)

An SIRS age-structured epidemic model for a vertically as well as horizontally transmitted disease under vaccination is investigated when the fertility, mortality and removal rates depend on age and the force of infection of proportionate mixing assumption type, and vaccination wanes over time. We prove the existence and uniqueness of solution to the model equations, and show that solutions of the model equations depend continuously on the initial age-distributions. Furthermore, we determine the steady states and obtain an explicitly computable threshold condition, in terms of the demographic and epidemiological parameters of the model; we then study the stability of the …


Population Trends Of Wintering Bald Eagles (Haliaeetus Leucocephalus) At The Lake Mead National Recreation Area, Nevada, Deanna Morrell May 2006

Population Trends Of Wintering Bald Eagles (Haliaeetus Leucocephalus) At The Lake Mead National Recreation Area, Nevada, Deanna Morrell

UNLV Theses, Dissertations, Professional Papers, and Capstones

The purpose of this study was to look at population trends of wintering bald eagles (Haliaeetus leucocephalus) at the Lake Mead National Recreation Area, Nevada from 1991 to 2006. Bald eagles were counted on January 5, 2006 along the entire shoreline of Lake Mead and Lake Mohave. This study focused on two questions: (1) how has the population changed over time? (2) How has the proportion of juvenile eagles to adult eagles changed over time? Question one was supported with the number of bald eagles significantly increasing (r=0.76, p=0.002). Question two was supported as the proportion of juveniles to adults …


Homeland Security: Engaging The Frontlines - Symposium Proceedings, George H. Baker, Cheryl J. Elliott Apr 2006

Homeland Security: Engaging The Frontlines - Symposium Proceedings, George H. Baker, Cheryl J. Elliott

George H Baker

The rise of the American homeland security endeavor under the leadership of the new Department of Homeland Security has been heralded by several major national strategy documents. These documents have served to organize efforts at top levels within the government and industry. However, the national strategy guidance is not getting to many organizations and people at the grass-roots level who can make the most difference in preventing attacks, protecting systems, and recovering from catastrophic events, viz. the general citizenry, private infrastructure owners, and local governments. To better understand grass-roots issues and solutions, James Madison University, in cooperation with the Federal …


2nd Annual Undergraduate Research Conference Abstract Book, University Of Missouri--Rolla Apr 2006

2nd Annual Undergraduate Research Conference Abstract Book, University Of Missouri--Rolla

Undergraduate Research Conference at Missouri S&T

No abstract provided.


Effectiveness Of Cane Toad Eradication Methods: Arakwal National Park, Matthew Miller Apr 2006

Effectiveness Of Cane Toad Eradication Methods: Arakwal National Park, Matthew Miller

Independent Study Project (ISP) Collection

The cane toad (Bufo marinus) is a pest throughout Australia. Not only is it poisonous to native predators, it also consumes or out competes native fauna. It has only recently entered into Northern New South Wales where the site for this study is located, at Arakwal National Park. This study aims to discover the most effective method of cane toad eradication in the National Park.

Over the course of 18 days, three traps were set and rotated between 9 different sites. Traps were set at sunset and cleared at sunrise. The three traps used were; (1) Pitfall style trap by …


Hydrodynamic Regulation Of Reproduction In Fucoid Algae: A Regional Model And Consequences For Population Structure, Susan H. Brawley Mar 2006

Hydrodynamic Regulation Of Reproduction In Fucoid Algae: A Regional Model And Consequences For Population Structure, Susan H. Brawley

University of Maine Office of Research Administration: Grant Reports

Fucoid algae dominate most rocky shores across the north Atlantic and contribute substantially to structuring of the coastal ecosystem. Reproduction in fucoid algae is sensitive to hydrodynamic conditions, resulting in high fertilization success because gamete release occurs only under calm conditions. These findings have important implications for asynchrony in gamete release between populations and the scale of population isolation. This study will 1) test a nascent model describing when successful fucoid reproduction can occur, 2) determine whether hybridization between Fucus vesiculosus and other fucoid algae occurs when gamete release is delayed by turbulent conditions, and 3) analyze whether genetic differentiation …


Mercury Concentrations In South Texas Game Fishes, E. Anthony Reisinger Mar 2006

Mercury Concentrations In South Texas Game Fishes, E. Anthony Reisinger

Theses and Dissertations - UTB/UTPA

Mercury (Hg) is one of the most ubiquitous and controversial metals in the world primarily due to the toxicity of the organic form of the metal, methylmercury (MeHg). MeHg is a neurotoxin at high levels, known to manifest its effects on humans primarily through consumption of certain fish and marine mammals, which tend to bioaccumulate MeHg in their tissues over time. Increased fish consumption and, thus, mercury intake in residents of coastal areas necessitates a better awareness of MeHg content in game fish species, thus the subject of this study.

Three hundred thirty-nine tissue samples were taken from 19 south …


Collaborative Research: Functional And Genomic Analysis Of Polysymbiosis In The Wood-Boring Bivalve Lyrodus Pedicellatus, Daniel L. Distel Jan 2006

Collaborative Research: Functional And Genomic Analysis Of Polysymbiosis In The Wood-Boring Bivalve Lyrodus Pedicellatus, Daniel L. Distel

University of Maine Office of Research Administration: Grant Reports

Each day massive quantities of wood and woody plant materials enter the oceans, providing resources upon which a large variety of marine organisms depend. However, the biological communities supported by marine wood are only poorly understood. Globally, the most important consumers of marine wood are wood-boring bivalves of the family Teredinidae (shipworms, primarily found above 150 m) and Pholadidae (subfamily Xylophagainae, primarily found in the deep sea, 150-8000 m). These clams depend on intracellular endosymbiotic bacteria (endocytobionts) to help them consume a substrate (lignocellulose) that cannot be utilized by most other animals. Two functions have been proposed for symbionts of …


Why Is The Number Of Dna Bases 4?, Bo Deng Jan 2006

Why Is The Number Of Dna Bases 4?, Bo Deng

Department of Mathematics: Faculty Publications

In this paper we construct a mathematical model for DNA replication based on Shannon’s mathematical theory for communication. We treatDNAreplication as a communication channel. We show that the mean replication rate is maximal with four nucleotide bases under the primary assumption that the pairing time of the G–C bases is between 1.65 and 3 times the pairing time of the A–T bases.


Trans-Atlantic Correlation Of Upper Cretaceous Marine Sediments, Marcus R. Ross, David E. Fastovsky Jan 2006

Trans-Atlantic Correlation Of Upper Cretaceous Marine Sediments, Marcus R. Ross, David E. Fastovsky

Faculty Publications and Presentations

Upper Cretaceous marine deposits from the Mid-Atlantic region of North America (Delaware, Maryland, and New Jersey) and the Maastricht area (southern Netherlands, and nearby Belgium and Gennany) are correlated across the Atlantic using a variety of macro invertebrates, nannofossils, and sequence stratigraphy. Four late Cretaceous Mid-Atlantic sequences, the Marshalltown, Englishtown, Merchantville, and Navesink, span the upper Santonian to lowennost Danian, and have direct correlatives in the Maastricht area. Correlations between the Mid-Atlantic and the Maastricht regions (respectively) are as follows: the upper Santonian to lower Campanian Merchantville and Matawan formations with the Achen and lower Vaals fonnations; the middle Campanian …


Mechanism Of Shifts Of Potentials Of Hemosorbents Based On Activated Carbons Caused By Adsorption Of Organic Toxicants, Mark Goldin, Yury Goldfarb, Mikhail M. Goldin Jan 2006

Mechanism Of Shifts Of Potentials Of Hemosorbents Based On Activated Carbons Caused By Adsorption Of Organic Toxicants, Mark Goldin, Yury Goldfarb, Mikhail M. Goldin

Faculty Publications and Presentations

No abstract provided.


The Abundance Of Different Dragonfly Species At Furman Lake - 2006, Wade Worthen Jan 2006

The Abundance Of Different Dragonfly Species At Furman Lake - 2006, Wade Worthen

Furman Lake Restoration Book Gallery

A line graph showing the abundance of fifteen different species of dragonflies spotted over a five month period at Furman Lake in 2006.


Emd: An Ensemble Algorithm For Discovering Regulatory Motifs In Dna Sequences, Jianjun Hu, Yifeng D. Yang, Daisuke Kihara Jan 2006

Emd: An Ensemble Algorithm For Discovering Regulatory Motifs In Dna Sequences, Jianjun Hu, Yifeng D. Yang, Daisuke Kihara

Department of Biological Sciences Faculty Publications

Background

Understanding gene regulatory networks has become one of the central research problems in bioinformatics. More than thirty algorithms have been proposed to identify DNA regulatory sites during the past thirty years. However, the prediction accuracy of these algorithms is still quite low. Ensemble algorithms have emerged as an effective strategy in bioinformatics for improving the prediction accuracy by exploiting the synergetic prediction capability of multiple algorithms.

Results

We proposed a novel clustering-based ensemble algorithm named EMD for de novo motif discovery by combining multiple predictions from multiple runs of one or more base component algorithms. The ensemble approach is …


A Taxonomy Of Teleology: Phillip Johnson, The Intelligent Design Community, And Young-Earth Creationism, Marcus R. Ross, P. A. Nelson Jan 2006

A Taxonomy Of Teleology: Phillip Johnson, The Intelligent Design Community, And Young-Earth Creationism, Marcus R. Ross, P. A. Nelson

Faculty Publications and Presentations

No abstract provided.


The Mechanism Of Potential Shifts Of Activated Carbon Due To Adsorption Of Organic Compounds, Mikhail M. Goldin, Vladimir Avramenko, Alexander G. Volkov, Mark Goldin Jan 2006

The Mechanism Of Potential Shifts Of Activated Carbon Due To Adsorption Of Organic Compounds, Mikhail M. Goldin, Vladimir Avramenko, Alexander G. Volkov, Mark Goldin

Faculty Publications and Presentations

No abstract provided.


Chironomid Hemoglobin Genetic Diversity As An Indicator Of The New Jersey Hackensack Meadowlands Wetland Health, Lene Marie De Coursin Jacobs Jan 2006

Chironomid Hemoglobin Genetic Diversity As An Indicator Of The New Jersey Hackensack Meadowlands Wetland Health, Lene Marie De Coursin Jacobs

Seton Hall University Dissertations and Theses (ETDs)

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Terpenes And Carbohydrate Source Influence Rumen Fermentation, Digestibility, Intake, And Preference In Sheep, J. J. Villalba, F. D. Provenza, K. C. Olson Jan 2006

Terpenes And Carbohydrate Source Influence Rumen Fermentation, Digestibility, Intake, And Preference In Sheep, J. J. Villalba, F. D. Provenza, K. C. Olson

Green Canyon Environmental Research Area, Logan Utah

We hypothesized that toxins and nutrients in foods interact to influence foraging behavior by herbivores. Based on this hypothesis we predicted that 1) terpenes in big sagebrush (Artemisia tridentata) influence intake and preference in sheep for diets varying in sources of nonstructural (barley grain) and structural (sugar beet pulp) carbohydrates, and 2) these effects are due to the differential effects of terpenes on fermentation products and apparent digestibility of each class of carbohydrates. Lambs were fed 2 isoenergetic and isonitrogenous diets with varying proportions of the same ingredients (beet pulp- and barley grain-based diet) or offered a choice between the …