Physical Sciences and Mathematics Commons^™

Mycorrhizal Roots In A Temperate Forest Take Up Organic Nitrogen From 13c- And 15n-Labeled Organic Matter, Matthew A. Vadeboncoeur, Andrew P. Ouimette, Erik A. Hobbie

Earth Systems Research Center

Background and Aims

The importance of the uptake of nitrogen in organic form by plants and mycorrhizal fungi has been demonstrated in various ecosystems including temperate forests. However, in previous experiments, isotopically labeled amino acids were often added to soils in concentrations that may be higher than those normally available to roots and mycorrhizal hyphae in situ, and these high concentrations could contribute to exaggerated uptake.

Methods

We used an experimental approach in which we added ¹³C-labeled and ¹⁵N-labeled whole cells to root-ingrowth cores, allowing proteolytic enzymes to release labeled organic nitrogen at a natural rate, as …

Bacterial Diversity And Function Within An Epigenic Cave System And Implications For Other Limestone Cave Systems, Kathleen Merritt Brannen-Donnelly

Doctoral Dissertations

There are approximately 48,000 known cave systems in the United States of America, with caves formed in carbonate karst terrains being the most common. Epigenic systems develop from the downward flow of meteoric water through carbonate bedrock and the solutional enlargement of interconnected subsurface conduits. Despite carbonate karst aquifers being globally extensive and important drinking water sources, microbial diversity and function are poorly understood compared to other Earth environments. After several decades of research, studies have shown that microorganisms in caves affect water quality, rates of carbonate dissolution and precipitation, and ecosystem nutrition through organic matter cycling. However, limited prior …

Rare Occurrences Of Free-Living Bacteria Belonging To Sedimenticola From Subtidal Seagrass Beds Associated With The Lucinid Clam, Stewartia Floridana, Aaron M. Goemann

Masters Theses

Lucinid clams and their sulfur-oxidizing endosymbionts comprise two compartments of a three-stage, biogeochemical relationship among the clams, seagrasses, and microbial communities in marine sediments. A population of the lucinid clam, Stewartia floridana, was sampled from a subtidal seagrass bed at Bokeelia Island Seaport in Florida to test the hypotheses: (1) S. floridana, like other lucinids, are more abundant in seagrass beds than bare sediments; (2) S. floridana gill microbiomes are dominated by one bacterial operational taxonomic unit (OTU) at a sequence similarity threshold level of 97% (a common cutoff for species level taxonomy) from 16S rRNA genes; …

Long-Term Impacts Of Conservation Management Practices On Soil Carbon Storage, Stability, And Utilization Under Cotton Production In West Tennessee, Candace Brooke Wilson

Masters Theses

Biogeochemical cycling of soil carbon (C) is heavily influenced by conservation agricultural (CA) practices. This study examined SOC stability under three CA practices: reduced nitrogen (N) fertilizer application rate, cover cropping, and zero-tillage implemented for 31 years. Respiration rates measured from a 602-day incubation period were fitted to a double-pool first order exponential model of SOC decomposition. The active [respired] SOC pool showed distinct differences between applications of reduced (34N kg ha^-1 [-1]) and high fertilization rates (101N kg ha^-1) combined with tillage, and suggest that high fertilizer applications with conventional tillage allocated more C into a …

Environmental Controls On The Diversity And Distribution Of Endosymbionts Associated With Phacoides Pectinatus (Bivalvia: Lucinidae) From Shallow Mangrove And Seagrass Sediments, St. Lucie County, Florida, Thomas Walters Doty

Masters Theses

Lucinid bivalves are capable of colonizing traditionally inhospitable shallow marine sediments due to metabolic functions of bacterial endosymbionts located within their gills. Because lucinids can often be the dominant sediment infauna, defining their roles in sediment and pore fluid geochemical cycling is necessary to address concerns related to changes in coastal biological diversity and to understanding the sensitivity of threatened coastal ecosystems over time. However, there has been limited research done to understand the diversity and distribution of many lucinid chemosymbiotic systems. Therefore, the goals of this thesis were to evaluate the distribution of Phacoides pectinatus and its endosymbiont communities …

Thermodynamic Modeling Of Aqueous Geochemistry Of Chlorine Salts: Application To Stability And Habitability Of Liquid Brines On Mars, Amira Elsenousy

Graduate Theses and Dissertations

The WCL (Wet Chemistry Lab) instrument on board the Mars’s Phoenix Lander has identified the soluble ionic composition of the soil at the landing site. Two important ions were detected at the landing site; perchlorates (ClO4-) with a concentration of ~ 2.4 wt% and chlorides (Cl-) with a concentration of 0.54 wt%. Between chloride and perchlorate ions three other oxidized ions exist and called chlorine ions: hypochlorite ClO - (ox. state +1), chlorite ClO2- (ox. state +3) and chlorate ClO3- (ox. state +5). These oxidized ions might be existed as intermediate species on the surface of Mars but remained undetected. …

Convergence Of Microbial Assimilations Of Soil Carbon, Nitrogen, Phosphorus And Sulfur In Terrestrial Ecosystems, Xiaofeng Xu, Dafeng Hui, Anthony W. King, Xia Song, Peter E. Thornton, Lihua Zhang

Biology Faculty Research

How soil microbes assimilate carbon-C, nitrogen-N, phosphorus-P and sulfur-S is fundamental for understanding nutrient cycling in terrestrial ecosystems. We compiled a global database of C, N, P and S concentrations in soils and microbes and developed relationships between them by using a power function model. The C:N:P:S was estimated to be 287:17:1:0.8 for soils and 42:6:1:0.4 for microbes. We found a convergence of the relationships between elements in soils and in soil microbial biomass across C, N, P and S. The element concentrations in soil microbial biomass follow a homeostatic regulation curve with soil element concentrations across C, N, P …

Mercury In Coniferous And Deciduous Upland Forests In Northern New England, Usa: Implications Of Climate Change, J. B. Richardson, A. J. Friedland

Dartmouth Scholarship

Climatic changes in the northeastern US are expected to cause coniferous stands to transition to deciduous stands over the next hundred years. Mercury (Hg) sequestration in forest soils may change as a result. In order to understand potential effects of such a transition, we studied aboveground vegetation and soils at paired coniferous and deciduous stands on eight mountains in Vermont and New Hampshire, USA.

A High-Resolution Paleoenvironmental And Paleoclimatic History Of Extreme Events On The Laminated Sediment Record From Basin Pond, Fayette, Maine, U.S.A., Daniel R. Miller

Masters Theses

Future impacts from climate change can be better understood by placing modern climate trends into perspective through extension of the short instrumental records of climate variability. This is especially true for extreme climatic events, such as extreme precipitation and wildfires, as the period of instrumental records provides only a few examples and these have likely have been influenced by anthropogenic warming. Multi-parameter records showing the past range of climate variability can be obtained from lakes. Lakes are particularly good recorders of climate variability because sediment from the surrounding environment accumulates in lakes, making them sensitive recorders of climate variability and …

Examining The Mid- Brunhes Event In The Terrestrial Arctic: An Organic Geochemical Record From Lake El’Gygytgyn, Russia, Mary Helen Habicht

Masters Theses

The characteristic glacial and interglacial cycles of the Pleistocene underwent a climatic transition at ~430 ka known as the Mid- Brunhes Event (MBE). Many studies, particularly from the Southern Hemisphere have noted that after this transition, the amplitude of the climatic cycles increased. Despite the indication of an MBE signal in many globally distributed paleoclimate records, the geographic extent of the climatic transition remains unknown and its presence in northern hemisphere and terrestrial records is debated. Lake El’gygytgyn is located in the far- east Russian Arctic and provides the longest, most continuous record of Arctic climate (3.6 Ma). This study …

A Comparative Analysis Of Portable X-Ray Fluorescence Spectrometry And Stable Isotopes In Assessing Ancient Coastal Peruvian Diets, Theresa Jane Gilbertson

USF Tampa Graduate Theses and Dissertations

This dissertation explores a cross-cultural analysis of the dietary signatures of four coastal cultures of prehistoric Peru. A combination of elemental analysis based on portable x-ray fluorescence spectrometry (pXRF), testing trace elements presented in 209 individuals’ skulls representing the Nazca (38), Cañete (33), Lima (40), and Moche (98) valleys and/or cultures of the first millennium AD, is weighed in conjunction with isotope ratio mass spectrometry (IRMS) to analyze human bone collagen and bone apatite derived from a portion of the individuals represented in the Nazca, Cañete, and Lima cranial samples.

Evidence from the results of both tests are weighed using …

Gaseous Carbon Emissions (Methane And Carbon Dioxide) From Wetland Soils In A Re-Created Everglades Landscape, Bradley R. Schonhoff

FIU Electronic Theses and Dissertations

Reducing the rates of greenhouse gas (GHG) emissions is critical in combatting global climate change. Carbon dioxide (CO₂) and methane (CH₄) are the two most important carbon-based GHGs, for their atmospheric warming potential. Wetlands such as the Florida Everglades play major roles in the global carbon cycle, as varying hydrologic conditions lead to differential production rates of these two GHGs. This study measured CO₂ and CH₄ emissions in a re-created Everglades ridge-and-slough wetland, where water levels were controlled to reflect natural flood patterns. As expected, lower elevations were flooded longer and produced more CH …

In Situ Studies Of Limestone Dissolution In A Coastal Submarine Spring, Rachel Marie Schweers

USF Tampa Graduate Theses and Dissertations

Limestone dissolution in karst environments is likely due to geochemistry of the water, the actions of microbial communities, and the effect of water flow. We explored the rate of limestone dissolution and will examine here the microbial communities associated with the limestone. A conduit within the brackish cave, Double Keyhole Spring, on the coast of central west Florida was the site of the experiment. PVC pipes (5cm x 16cm) were filled with crushed limestone that was screened to a 1.9cm – 2.54cm size range. There were three treatments (5 replicates each): Control - sealed autoclaved controls with limestone and conduit …

Patterns Of Anthropogenic Nutrient Contaminants In The Otter Creek Watershed, Madison County, Kentucky, Elijah D. Wolfe, Walter S. Borowski, Jacob L. Robin

EKU Faculty and Staff Scholarship

We measured nutrient concentrations within the Otter Creek watershed (Madison County, Kentucky) to: (1) discover levels of anthropogenic contaminants affecting the water quality; (2) compare these measurements to a national data set; and (3) identify nutrient sources. The watershed mainly drains rural land characterized by cattle grazing, but also drains the town of Richmond. We sampled throughout the watershed to gain a representative perspective of nutrient levels and specifically targeted localities of suspected anthropogenic nutrient sources. Water samples were passed through a 0.45 mm filter, placed in pre-acidified vials, and measured one to two days after collection. Nutrients – ammonium, …

Changes In Litter Quality Caused By Simulated Nitrogen Deposition Reinforce The N-Induced Suppression Of Litter Decay, Linda T. A. Van Diepen, Serita D. Frey, Christopher M. Sthultz, Eric W. Morrison, Rakesh Minocha, Anne Pringle

Faculty Publications

Rates of nitrogen (N) deposition are increasing in industrialized and rapidly developing nations. Simulated N deposition suppresses plant litter decay rates, in particular for low quality (high lignin) litter. Litter quality is a primary driver of litter decomposition; however, it is not clear how changes in litter quality caused by long-term ecosystem exposure to chronic N additions interact with altered soil N-availability to influence litter decay dynamics. To document the effects of simulated N deposition on litter quality, we conducted a meta-analysis of available litter nutrient data from simulated N deposition experiments in temperate forests. To directly test whether changes …

Efficacy Of Sediment Remediation Efforts On Pah Contaminant Flux Via Porewater Advection At The Sediment-Surface Water Interface, Julie L. Krask, Michael A. Unger, George G. Vadas, Michele A. Cochran, Aaron J. Beck

Presentations

Groundwater advection at the sediment-surface water interface is an important biogeochemical mechanism controlling the transport and bioavailability of contaminants in estuaries. At sites along the Elizabeth River (VA, USA) where the subterranean environment is heavily contaminated with polycyclic aromatic hydrocarbon (PAH)-rich dense non-aqueous phase liquid (DNAPL), consideration of groundwater-surface water dynamics and associated chemical exchange is critical for effective remediation. Preliminary data suggest that porewater advection in permeable sediments at this location is controlled by a host of physical forcing mechanisms that correspond with total flow estimates of up to 15,000 centimeters/year. Here, the efficacy of sediment remediation strategies, including …

Effects Of Commercial Clam Aquaculture On Biogeochemical Cycling In Shallow Coastal Ecosystems, Annie E. Murphy, Iris C. Anderson, Mark W. Luckenbach

Presentations

The bivalve aquaculture industry is expanding worldwide; sustainability requires improved understanding of its interactions with the environment. As suspension feeders, bivalves, such as clams, reduce primary production through feeding, and thus dampen eutrophication. Additionally, enhanced rates of denitrification, the microbial removal of reactive nitrogen, have been reported in bivalve sediments due to increased organic matter supply through biodeposition; another potential, yet indirect, control on eutrophication. Simultaneously, bivalves can influence local ‘bottom-up’ effects on production by enhancing nutrient regeneration through excretion and microbial mineralization of biodeposits. At clam aquaculture sediments, respiration and nutrient regeneration rates were significantly higher compared to uncultivated …

Source-Specific Molecular Signatures For Light-Absorbing Organic Aerosols, Amanda Susan Willoughby

Chemistry & Biochemistry Theses & Dissertations

Organic aerosols (OA) are universally regarded as an important component of the atmosphere based on quantitative significance as well as the far-reaching impact they have on global climate forcing and human health. Despite the acknowledged importance, OA amounts and impacts remain the largest uncertainties regarding radiative forcing estimates. Incomplete chemical characterization of aerosol organic matter (OM) and a lack of concrete source apportionment is a major source of this uncertainty. The primary focus of this study is to provide much needed molecular details regarding ambient OA from key emission sources, and establish links between molecular and optical properties.

Complete chemical …

Carbon And Nitrogen Isotopic Investigations Of The Late Pleistocene Paleoecology Of Eastern Beringia, Yukon Territory, Using Soils, Plants And Rodent Bones, Farnoush Tahmasebi

Electronic Thesis and Dissertation Repository

During the late Pleistocene (130-12 ka), Beringia, a largely ice-free land located in the Mammoth Steppe Ecosystem, was home to a large grazing community of megafauna. Many of these animals, including the woolly mammoth, became extinct at the terminal Pleistocene. Assessment of the paleoenvironment, nutrient cycling and foraging ecology in Beringia should help to understand the role of climate change in their extirpation. Such information might also help to explain the curiously higher δ¹⁵N of woolly mammoths relative to other coeval herbivores.

This study assessed eastern Beringian paleoecology using stable nitrogen (N) and carbon (C) isotopic analyses of …

Is Atmospheric Phosphorus Pollution Altering Global Alpine Lake Stoichiometry?, Janice Brahney, Natalie Mahowald, Daniel S. Ward, Ashley P. Ballantyne, Jason C. Neff

Ecosystem and Conservation Sciences Faculty Publications

Anthropogenic activities have significantly altered atmospheric chemistry and changed the global mobility of key macro-nutrients. Here we show that contemporary global patterns in nitrogen (N) and phosphorus (P) emissions drive large hemispheric variation in precipitation chemistry. These global patterns of nutrient emission and deposition (N:P) are in turn closely reflected in the water chemistry of naturally oligotrophic lake (r² = 0.81, p < 0.0001). Observed increases in anthropogenic N deposition play a role in nutrient concentrations (r² = 0.02, p < 0.05); however, atmospheric deposition of P appears to be major contributor to this pattern (r² = 0.65, p < 0.0001). Atmospheric simulations indicate a global increase in P deposition by 1.4 times the pre-industrial rate largely due to increased dust and biomass burning emissions. Although changes in the mass flux of global P deposition are smaller than for N, the impacts on primary productivity may be greater because, on average, one unit of increased P deposition has 16 times the influence of one unit of N deposition. These stoichiometric considerations, combined with the evidence presented here, suggest that increases in P deposition may be a major driver of alpine Lake trophic status, particularly in the Southern Hemisphere. These results underscore the need for the broader scientific community to consider the impact of atmospheric phosphorus deposition on the water quality of naturally oligotrophic lakes.

Disentangling Climatic And Anthropogenic Controls On Global Terrestrial Evapotranspiration Trends, Jiafu Mao, Wenting Fu, Xiaoying Shi, Daniel M. Ricciuto, Joshua B. Fisher, Robert E. Dickinson, Yaxing Wei, Willis Shem, Shilong Piao, Kaicun Wang, Christopher R. Schwalm, Hanqin Tian, Mingquan Mu, Altaf Arain, Philippe Ciais, Robert Cook, Yongdiu Dai, Daniel Hayes, Forrest M. Hoffman, Maoyi Huang, Suo Huang, Deborah N. Huntzinger, Akihiko Ito, Atul Jain, Anthony W. King, Huimin Lei, Chaoqun (Crystal) Lu, Huimin Lei, Anna M. Michalak, Changhui Peng, Shushi Peng, Benjamin Poulter, Kevin Schaefer, Elshin Jafarov, Peter E. Thornton, Weile Wang, Ning Zeng, Zhenzhong Zeng, Fang Zhao, Qiuan Zhu, Zaichun Zhu

Chaoqun (Crystal) Lu

We examined natural and anthropogenic controls on terrestrial evapotranspiration (ET) changes from 1982 to 2010 using multiple estimates from remote sensing-based datasets and process-oriented land surface models.A significant increasing trend of ET in each hemisphere was consistently revealed by observationally-constrained data and multi-model ensembles that considered historic natural and anthropogenic drivers. The climate impacts were simulated to determine the spatiotemporal variations in ET. Globally, risingCO2 ranked second in these models after the predominant climatic influences, and yielded decreasing trends in canopy transpiration and ET, especially for tropical forests and high-latitude shrub land. Increasing nitrogen deposition slightly amplified global ET via …

Predicting Landscape-Scale Co 2 Flux At A Pasture And Rice Paddy With Long-Term Hyperspectral Canopy Reflectance Measurements, J. H. Matthes, S. H. Knox, C. Sturtevant, O. Sonnentag

Dartmouth Scholarship

Measurements of hyperspectral canopy reflectance provide a detailed snapshot of information regarding canopy biochemistry, structure and physiology. In this study, we collected 5 years of repeated canopy hyperspectral reflectance measurements for a total of over 100 site visits within the flux footprints of two eddy covariance towers at a pasture and rice paddy in northern California. The vegetation at both sites exhibited dynamic phenology, with significant interannual variability in the timing of seasonal patterns that propagated into interannual variability in measured hyperspectral reflectance. We used partial least-squares regression (PLSR) modeling to leverage the information contained within the entire canopy reflectance …

Evidence Of Late Quaternary Fires From Charcoal And Siliceous Aggregates In Lake Sediments In The Eastern U.S.A., Joanne P. Ballard

Doctoral Dissertations

The late-glacial transition to the Holocene, 15,000–11,600 cal yr BP, is an enigmatic period of dynamic global changes and a major extinction event in North America. Fire is an agent of disturbance that transforms the environment physically and chemically, and affects plant community composition. To improve understanding of the linkages between fire, vegetation, and climate over the late glacial and Holocene in the eastern U.S., I analyzed lake-sediment cores for charcoal and indicators of wood ash, and compared results to existing pollen records. A new microscopic charcoal record from Anderson Pond, Tennessee revealed high fire activity from 23,000–15,000 cal yr …

Environmental Forcing Does Not Induce Diel Or Synoptic Variation In The Carbon Isotope Content Of Forest Soil Respiration, Steven J. Hall, D. R. Bowling, J. E. Egan

Steven J. Hall

Recent studies have examined temporal fluctuations in the amount and carbon isotope content (δ13C) of CO2 produced by the respiration of roots and soil organisms. These changes have been correlated with diel cycles of environmental forcing (e.g., sunlight and soil temperature) and with synoptic-scale atmospheric motion (e.g., rain events and pressure-induced ventilation). We used an extensive suite of measurements to examine soil respiration over 2 months in a subalpine forest in Colorado, USA (the Niwot Ridge AmeriFlux forest). Observations included automated measurements of CO2 and δ13C of CO2 in the soil efflux, the soil gas profile, and forest air. There …

Arctic Environmental Change Across The Pliocene-Pleistocene Transition, Benjamin Andrew Keisling

Masters Theses

Environmental change in the Arctic proceeds at an unprecedented rate. The Pliocene epoch (5-2.65 million years ago) represents an analog for future climate conditions, with pCO₂ and continental configurations similar to present. Yet conditions in the Pliocene Arctic are poorly characterized because of sparse sampling. The records that do exist indicate periods of extreme warmth, as well as the first expansion of large ice-sheets in the Northern Hemisphere, took place from the end of the Pliocene into the early Pleistocene. Understanding these deposits and their implications for our future requires developing a sense of climatic evolution across the …

Soil Chemistry On Watershed 1: 1998 - 2014, Chris E. Johnson

Chris E Johnson

No abstract provided.

Soil Chemistry On Watershed 1: 1998 - 2014, Chris E. Johnson

Civil and Environmental Engineering

No abstract provided.

The Functional And Distributional Ecology Of Mycetozoans Under Changing Edaphic And Climatic Dynamics, Geoffrey Lloyd Zahn

Graduate Theses and Dissertations

Investigations into the distribution and ecosystem functions of fruiting amoebae revealed that local-scale environmental conditions can largely explain broad biogeographical patterns in species assemblage, the way in which amoeboid predators shape bacterial communities and how this top-down influence may affect global biogeochemical processes in a changing climate. The distribution and assemblage of protosteloid amoebae on the islands of New Zealand and Hawaii did not yield any expected patterns of island biogeography, and conformed to other global regions studied. The strongest predictor of species richness in a given region was sampling effort and these species do not appear to have any …

Stable Isotopes Of Hydrothermal Carbonate Minerals In The Butte Porphyry-Lode Deposits, Montana, Ryan Stevenson

Graduate Theses & Non-Theses

The stable isotopic compositions of over 90 hydrothermal carbonate minerals in the Butte porphyry-lode system were analyzed. These samples came from the underground workings as well as the active Continental Pit area. Most material came from polymetallic “Main Stage” veins which post-date the porphyry Cu-Mo mineralization of Butte. Some samples from late calcite-stellerite veins were also included in the study. Rhodochrosite d¹³C and d¹⁸O values range from -8.3 to -2.9‰ (average of -6.7±1.0‰) and -1.8 to 12.8‰ (average of 3.6 ±3.4‰) respectively, while calcite d¹³C and d¹⁸O values range from -9.0 to …

Record Of Archaeal Activity At The Serpentinite-Hosted Lost City Hydrothermal Field, S. Méhay, G. Früh-Green, Susan Lang, S. Bernasconi, W. Brazelton, M. Schrenk, P. Schaeffer, P. Adam

Susan Q. Lang

No abstract provided.