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Physical Sciences and Mathematics Commons

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Full-Text Articles in Physical Sciences and Mathematics

Parameter Sensitivity For In Vitro Anthrax Studies, Yareley Gonzalez, Maria Macias-Bedolla, Megan O. Powell Sep 2018

Parameter Sensitivity For In Vitro Anthrax Studies, Yareley Gonzalez, Maria Macias-Bedolla, Megan O. Powell

Spora: A Journal of Biomathematics

Studies done on interactions between spores and macrophages done in vitro show inconsistent results based on experimental protocol and inhibit meaningful extrapolation to in vivo. In this study, we perform a sensitivity analysis of a model representing in vitro studies of interactions between anthrax spores and macrophages to help address the effects of these inconsistencies. We perform both local and global analyses using Latin hypercube sampling and partial rank correlation coefficients. Our analysis indicates the amount of intracellular bacteria over time is most sensitive to the killing of intracellular bacteria by the macrophages and replication of the bacteria inside …


Mathematical Modeling Of Tumor Immune Interactions: A Closer Look At The Role Of A Pd-L1 Inhibitor In Cancer Immunotherapy, Ami Radunskaya, Ruby Kim, Timothy Woods Ii Apr 2018

Mathematical Modeling Of Tumor Immune Interactions: A Closer Look At The Role Of A Pd-L1 Inhibitor In Cancer Immunotherapy, Ami Radunskaya, Ruby Kim, Timothy Woods Ii

Spora: A Journal of Biomathematics

Monoclonal antibodies have shown promising results as a form of cancer immunotherapy used either alone or in combination with another treatment. We model a monoclonal antibody in combination with a dendritic cell (DC) vaccine in order to study treatment optimization. Certain proteins on tumor cells allow the tumor cells to bind to specific receptors on immune cells, rendering the immune cells ineffective. Experiments using mouse models show that a combination of antibodies to these proteins with tumor suppressing drugs improves the effectiveness of cancer vaccines. We create independent models of each of the two treatments in combination with DC therapy, …


Modeling Mayfly Nymph Length Distribution And Population Dynamics Across A Gradient Of Stream Temperatures And Stream Types, Jeremy Anthony, Jennifer Baccam, Imanuel Bier, Emily Gregg, Leif Halverson, Ryan Mulcahy, Emmanuel Okanla, Samira A. Osman, Adam R. Pancoast, Kevin C. Schultz, Alex Sushko, Jennifer Vorarath, Yia Vue, Austin Wagner, Emily Gaenzle Schilling, John M. Zobitz Jan 2018

Modeling Mayfly Nymph Length Distribution And Population Dynamics Across A Gradient Of Stream Temperatures And Stream Types, Jeremy Anthony, Jennifer Baccam, Imanuel Bier, Emily Gregg, Leif Halverson, Ryan Mulcahy, Emmanuel Okanla, Samira A. Osman, Adam R. Pancoast, Kevin C. Schultz, Alex Sushko, Jennifer Vorarath, Yia Vue, Austin Wagner, Emily Gaenzle Schilling, John M. Zobitz

Spora: A Journal of Biomathematics

We analyze a process-based temperature model for the length distribution and population over time of mayfly nymphs. Model parameters are estimated using a Markov Chain Monte Carlo parameter estimation method utilizing length distribution data at five different stream sites. Two different models (a standard exponential model and a modified Weibull model) of mayfly mortality are evaluated, where in both cases mayfly length growth is a function of stream temperature. Based on model-data comparisons to the modeled length distribution and the Bayesian Information Criterion, we found that approaches that length distribution data can reliably estimate 2–3 model parameters. Future model development …