Life Sciences Commons^™

Machine Learning For Species Habitat Analysis, Abigail Lavallin

USF Tampa Graduate Theses and Dissertations

Management and conservation initiatives will always be controlled by finite resources, whether financialor temporal. Understanding a species’ spatial ecology, and how its requirements vary across habitats and locations is key to a successful species management plan. During recent decades, it has been noted how many species populations have declined, despite conservation practices working to increase their numbers. The most prevalent impacts affecting fauna populations have come from anthropogenic change in the form of habitat loss and destruction, along with fragmentation, and global climate change. There is a clear need for management practices to now operate on an entire landscape instead …

Prokaryotic And Viral Community Composition Of Freshwater Springs In Florida, Usa, Kema Malki, Natalie A. Sawaya, Anna J. Székely, Michael J. Tisza, Mya Breitbart

Marine Science Faculty Publications

Aquifers, which are essential underground freshwater reservoirs worldwide, are understudied ecosystems that harbor diverse forms of microbial life. This study investigated the abundance and composition of prokaryotic and viral communities in the outflow of five springs across northern Florida, USA, as a proxy of microbial communities found in one of the most productive aquifers in the world, the Floridan aquifer. The average abundances of virus-like particles and prokaryotic cells were slightly lower than those reported from other groundwater systems, ranging from 9.6 × 10³ ml⁻¹ to 1.1 × 10⁵ ml⁻¹ and 2.2 × 10³ ml …

Altered Tropical Seascapes Influence Patterns Of Fish Assemblage And Ecological Functions In The Western Indian Ocean, D. H. Chacin, C. D. Stallings, M. Eggertsen, C. Åkerlund, C. Halling, C. Berkström

Marine Science Faculty Publications

The arrangement and composition of habitats within landscapes and fine-scale habitat characteristics influence community structure and ecological processes. These aspects can be altered by anthropogenic activities, thus influencing associated assemblages. Farming of macroalgae is a common practice in tropical settings and alters the natural composition of seascapes by introducing monoculture patches. The farmed macroalgae may also differ in palatability compared to naturally-occurring macroalgae, influencing herbivory. This study assessed how these farms may differ from natural macroalgal beds in terms of habitat heterogeneity, fish assemblages, and herbivory. We surveyed fish assemblages and deployed macroalgal assays within macroalgal beds, farms and at …

Behavioral Thermoregulation And Thermal Mismatches Influence Disease Dynamics In Amphibians, Erin Louise Sauer

USF Tampa Graduate Theses and Dissertations

Amphibians are currently the most threatened vertebra taxa on the planet. Hundreds of species are thought to have gone extinct while thousands more have been listed as threatened or endangered over the past few decades. Habitat loss, invasive species, climate change, and disease are all thought to have partially contributed to these declines. Two pathogens in particular, infectious viruses in the genus Ranavirus (simply referred to as ranavirus) and the fungus Batrachochytrium dendrobatidis (Bd), have been associated with global mass mortality events of amphibians. Virulent pathogens such as these tend to impose strong selective pressures on their hosts driving the …

The Effects Of Gopher Tortoise (Gopherus Polyphemus) Herbivory On Plant Community Composition And Seed Germination, And The Effects Of Gut Passage On The Germinability Of Seeds: A Meta-Analysis, Jason C. Richardson

USF Tampa Graduate Theses and Dissertations

Herbivory produces direct and indirect effects on plants and at different spatial scales will have varied consequences. Consumption of plants by vertebrate grazers may affect the plants on an organismal level through direct mortality, on a community level by changing species composition or by altering the rate of succession, and even at a whole ecosystem level by altering nutrient cycles.

The majority of the scientific literature has focused extensively on herbivory by mammals and birds. With regard to mammals, studies have shown how folivory affects individual plants, plant populations, and communities of plants.

Mammals, as well as birds, also ingest …

Playing-With The World: Toy Story's Aesthetics And Metaphysics Of Play, Jonathan Hendricks

USF Tampa Graduate Theses and Dissertations

Pixar’s Toy Story (John Lassiter, 1995) is not just a story about toys and the children that play with them, but a demonstration of how we interact with the world. This thesis looks at the way in which both main children, Andy and Sid, interact with their toys and how this interaction is one that is structured by way of what Martin Heidegger calls “Enframing.” In this modality of playing, toys and other things and entities in the world, and the world itself, appear to the children as on-hand resources for use at any time and can be molded, as …

Climate Change Drives Outbreaks Of Emerging Infectious Disease And Phenological Shifts, Jeremy Cohen

USF Tampa Graduate Theses and Dissertations

Climate change is expected to impact species by altering infectious disease outcomes, modifying community composition, and causing species to shift their phenology, body sizes and range distributions. However, the outcomes of these impacts are often controversial; for example, scientists have debated whether climate change will exacerbate emerging infectious disease and which species are at greatest risk to advance their phenology. There reason for these controversies may be that climate change is impacting diverse processes across a wide range of ecological scales, as the interplay between fine-scale processes and broad-scale dynamics can often cause unpredictable changes to the biosphere. Therefore, it …

Pollutants And Foraminiferal Assemblages In Torrecillas Lagoon: An Environmental Micropaleontology Approach, Michael Martinez-Colon

USF Tampa Graduate Theses and Dissertations

Torrecillas Lagoon in the North Coast of Puerto Rico has experienced extensive anthropogenic influence over the past 400 years. Elevated concentrations of Potential Toxic Elements (PTEs) have been reported in surficial sediments. The main goal of this dissertation was to implement in Puerto Rico the use of benthic foraminifers as a bioindicators of PTEs and to compare the impact of Cu(II) on field samples with results of experimental work using cultures.

Analyses included geochemical assessment for bulk and carbonate- soluble bioavailable concentrations of PTEs in surface, core and pore-water samples, as well as analyses of grain-size, Percent Total Organic Carbon …

Transforming Ecosystems: When, Where, And How To Restore Contaminated Sites, Jason R. Rohr, Aïda M. Farag, Marc W. Cadotte, William H. Clements, James R. Smith, Cheryl P. Ulrich, Richard Woods

Integrative Biology Faculty and Staff Publications

Chemical contamination has impaired ecosystems, reducing biodiversity and the provisioning of functions and services. This has spurred a movement to restore contaminated ecosystems and develop and implement national and international regulations that require it. Nevertheless, ecological restoration remains a young and rapidly growing discipline and its intersection with toxicology is even more nascent and underdeveloped. Consequently, we provide guidance to scientists and practitioners on when, where, and how to restore contaminated ecosystems. Although restoration has many benefits, it also can be expensive, and in many cases systems can recover without human intervention. Hence, the first question we address is: "When …

Chemical Investigation Of Antarctic Marine Organisms & Their Role In Modern Drug Discovery, Jacqueline Lee Fries

USF Tampa Graduate Theses and Dissertations

The chemicals produced by biological systems, whether proteins, peptides, or terpenes, will always provide an intriguing topic for researchers. Invisibly controlling every aspect of nature, these molecules are responsible for life, evolution, and death. Specifically, here is described the secondary metabolites produced by Antarctic marine organisms as well as others, and how they are used to defend or attract other animals while potentially providing health benefits to mankind. This is done through collection, extraction, and separation of individual specimens. The respective mixtures of compounds after isolation are then analyzed via spectroscopic methods such as nuclear magnetic resonance spectroscopy, mass spectrometry, …

Multidimensional Metrics For Estimating Phage Abundance, Distribution, Gene Density, And Sequence Coverage In Metagenomes, Ramy Aziz, Bhakti Dwivedi, Sajia Akhter, Mya Breitbart, Robert Edwards

Marine Science Faculty Publications

No abstract provided.

Influences Of Yard Management Intensity On Urban Soil Biogeochemistry, Viviana Penuela Useche

USF Tampa Graduate Theses and Dissertations

Soils are critical to ecosystem function as they provide essential nutrients for primary producers, habitat and organic energy for decomposers, and storage of organic matter. Irrigation with reclaimed water is an increasingly popular water conservation strategy; yet its high salinity and nutrient content potentially affect soil properties. In this study, set in a residential neighborhood of Tampa (U.S.). I tested whether there are distinct lawn system management strategies characterized by systematic differences in reclaimed water usage and irrigation and fertilization practices. I then investigated whether soil biogeochemistry responds to lawn system management strategy.

My results indicated that amendment strategy, which …

Overwintering And Early Season Amplification Of Eastern Equine Encephalitis Virus In The Southeastern United States, Andrea Bingham

USF Tampa Graduate Theses and Dissertations

Eastern equine encephalitis virus (EEEV) is a highly pathogenic arbovirus that causes severe disease, with a mortality rate of approximately 30-35% in humans and 80-90% in horses. Studies dating back to the 1930's have identified many of the epidemiological and ecological aspects of the virus. However, there are several aspects of EEEV's transmission cycle that remain unclear. In the northeastern states, transmission is seasonal, peaking in the late summer months, while in Florida there is year-round transmission of EEEV. Recent phylogenetic studies have also suggested that Florida may serve as a reservoir for EEEV; the virus may periodically be introduced …

No Honor Among Snails: Conspecific Competition Leads To Incomplete Drill Holes In The Naticid Gastropod Neverita Delessertiana (R Cluz), Jack A. Hutchings

USF Tampa Graduate Theses and Dissertations

The fossil record of drilling predation has been widely used to study predator-prey interactions and their relative importance on long-term evolutionary processes. Incomplete drill holes have been interpreted as indicators of failed attacks due to well-defended prey. However, this interpretation is based on pair-wise interactions between one predator and one prey, a condition commonly compromised in nature. The hypothesis that interference among drilling predators leads to an increase in the relative frequency of incomplete drill holes was tested in the laboratory using the naticid Neverita delessertiana (R cluz) and a common prey, the bivalve Chione elevata (Say). The experiment consisted …

Proceedings Of The 2011 International Conference On Karst Hydrogeology And Ecosystems, Jason Samuel Polk, Leslie A. North

Environmental Sustainability Books

Jointly sponsored by the Hoffman Environmental Research Institute, the National Cave & Karst Research Institute, and the International Association of Hydrogeologists, the 2011 International Conference on Karst Hydrogeology and Ecosystems was held at Western Kentucky University in Bowling Green, Kentucy on 8-10 June 2011. Topics include karst geomorphology, engineering and modeling, isotope geochemistry, and cultural and educational aspects of karst environments.

Simulation Of Carbon-Nitrogen Cycling During Spring Upwelling In The Cariaco Basin, John J. Walsh, Dwight A. Dieterle, Frank E. Muller-Karger, Richard Bohrer, W. Paul Bissett, Ramon J. Varela, Ruben Aparicio, Rafael Diaz, Robert Thunell, Gordon T. Taylor, Mary I. Scranton, Kent A. Fanning, Edward T. Peltzer

Marine Science Faculty Publications

Coupled biological-physical models of carbon-nitrogen cycling by phytoplankton, zooplankton, and bacteria assess the impacts of nitrogen fixation and upwelled nitrate during new production within the shelf environs of the Cariaco Basin. During spring upwelling in response to a mean wind forcing of 8 m s(-1), the physical model matches remote-sensing and hydrographic estimates of surface temperature. Within the three-dimensional flow field, the steady solutions of the biological model of a simple food web of diatoms, adult calanoid copepods, and ammonifying/nitrifying bacteria approximate within similar to 9% the mean spring observations of settling fluxes caught by a sediment trap at similar …