Life Sciences Commons^™

Subsistence Strategies In Traditional Societies Distinguish Gut Microbiomes, Alexandra J. Obregon-Tito, Raul Y. Tito, Jessica Metcalf, Krithivasan Sankaranarayanan, Jose C. Clemente, Luke K. Ursell, Zhenjiang Zech Xu, Will Van Treuren, Rob Knight, Patrick M. Gaffney, Paul Spicer, Paul Lawson, Luis Marin-Reyes, Omar Trujillo-Villarroel, Morris Foster, Emilio Guija-Poma, Luzmila Troncoso-Corzo, Christina Warinner, Andrew T. Ozga, Cecil M. Lewis Jr.

Andrew Ozga

Recent studies suggest that gut microbiomes of urban-industrialized societies are different from those of traditional peoples. Here we examine the relationship between lifeways and gut microbiota through taxonomic and functional potential characterization of faecal samples from hunter-gatherer and traditional agriculturalist communities in Peru and an urban-industrialized community from the US. We find that in addition to taxonomic and metabolic differences between urban and traditional lifestyles, hunter-gatherers form a distinct sub-group among traditional peoples. As observed in previous studies, we find that Treponema are characteristic of traditional gut microbiomes. Moreover, through genome reconstruction (2.2–2.5 MB, coverage depth × 26–513) and functional …

A Moral Panic Over Cats, William S. Lynn, Francisco J. Santiago-Ávila, Joann Lindenmayer, John Hadidian, Arian D. Wallach, Barbara J. King

John Hadidian, PhD

Some conservationists believe that free-ranging cats pose an enormous risk to biodiversity and public health and therefore should be eliminated from the landscape by any means necessary. They further claim that those who question the science or ethics behind their arguments are science deniers (merchants of doubt) seeking to mislead the public. As much as we share a commitment to conservation of biodiversity and wild nature, we believe these ideas are wrong and fuel an unwarranted moral panic over cats. Those who question the ecological or epidemiological status of cats are not science deniers, and it is a false analogy …

A Moral Panic Over Cats, William S. Lynn, Francisco J. Santiago-Ávila, Joann Lindenmayer, John Hadidian, Arian D. Wallach, Barbara J. King

William S. Lynn, PhD

Some conservationists believe that free-ranging cats pose an enormous risk to biodiversity and public health and therefore should be eliminated from the landscape by any means necessary. They further claim that those who question the science or ethics behind their arguments are science deniers (merchants of doubt) seeking to mislead the public. As much as we share a commitment to conservation of biodiversity and wild nature, we believe these ideas are wrong and fuel an unwarranted moral panic over cats. Those who question the ecological or epidemiological status of cats are not science deniers, and it is a false analogy …

Cryptic Diversity In Rhampholeon Boulengeri (Sauria: Chamaeleonidae), A Pygmy Chameleon From The Albertine Rift Biodiversity Hotspot, Daniel F. Hughes, Krystal A. Tolley, Mathias Behangana, Wilber Lukwago, Michele Menegon, J. J. Maximilian Dehling, Jan Stipala, Colin R. Tilbury, Arshad M. Khan, Chifundera Kusamba, Eli Greenbaum

Arshad M. Khan, Ph.D.

No abstract provided.

Estimated Losses Of Plant Biodiversity Across The U.S. From Historical N Deposition From 1985—2010., Christopher M. Clark, Philip E. Morefield, Frank S. Gilliam, Linda H. Pardo

Frank S. Gilliam

Although nitrogen (N) deposition is a significant threat to herbaceous plant biodiversity worldwide, it is not a new stressor for many developed regions. Only recently has it become possible to estimate historical impacts nationally for the United States. We used 26 years (1985–2010) of deposition data, with ecosystem-specific functional responses from local field experiments and a national critical loads (CL) database, to generate scenario-based estimates of herbaceous species loss. Here we show that, in scenarios using the low end of the CL range, N deposition exceeded critical loads over 0.38, 6.5, 13.1, 88.6, and 222.1 million ha for the Mediterranean …

Documenting Effects Of Urbanization On Flora Using Herbarium Records, Rebecca W. Dolan, Marcia E. Moore, Jessica Stephens

Rebecca W. Dolan

As human populations increasingly live in cities, urban floras and the ecosystem services they provide are under increasing threat. Understanding the effects of urbanization on plants can help to predict future changes and identify ways to preserve biological diversity. Relatively few studies document changes through time in the flora of a focal region and those that do primarily address European floras. They often rely on contemporary spatial gradient studies as surrogates for changes with time. We compare historical species records (prior to 1940) with the current flora for Marion County, Indiana, USA, home to Indianapolis, the 13th largest city in …

Applying The Principles Of Spatial Modelling To The Management Of Biodiversity In The Fragmented Landscapes Of South-Western Australia, Shaun Molloy

Shaun W Molloy Dr

Biodiversity conservation throughout the world is challenged by the impacts of a changing climate on fragmented landscapes. To mitigate these threats, conservation managers require models which can demonstrate the consequences of both negative impacts and management actions. This need can be addressed through spatial modelling applications. Unfortunately, throughout much of the world, spatial modelling is forgone, being seen as requiring skills and resources beyond the means of many conservation planners and managers. This thesis seeks to address this dilemma by delivering criteria for a successful modelling application and by providing case studies which demonstrate how appropriate modelling can be undertaken …

La Diversidad De Los Analisis De Diversidad [The Diversity Of Diversity Analyses], Victor D. Carmona

Victor D. Carmona-Galindo

There is a lack of consistency with respect to the use of the terms like species richness, diversity and biodiversity, which extends to the analysis of diversity indices and the merit of using diversity indices in the evaluation (comparison and contrast) of biological communities. The purpose of this article is to provide working definitions for these terms and cite examples from the primary literature that demonstrate the utility of estimating richness, evaluating proportional abundance patterns, as well as comparing indices of diversity and similarity to study patterns of biological organization at different ecological scales. Additionally, we provide a manual in …

Global Cities Are Coastal Cities Too: Paradox In Sustainability?, Herman L. Boschken

Herman L. Boschken

Worldwide, most global cities are located in coastal zones, but a paradox of sustainability is especially striking for American global cities. This article examines such paradox drawn between globalization-induced development and coastal ecosystems. It focuses on two developmental components found principally in global cities: (1) the agglomeration of foreign waterborne commerce and global business services and (2) the accelerated activity and mobility habits of a global professional class. Despite formidable gaps in research, some anecdotal evidence suggests unique hazards exist for the coastal ecology as globalization pressures expand a global city’s urban footprint.

Biodiversity And The Challenge Of Saving The Ordinary, Holly Doremus

Holly Doremus

No abstract provided.

Nature, Knowledge And Profit: The Yellowstone Bioprospecting Controversy And The Core Purposes Of America's National Parks, Holly Doremus

Holly Doremus

Examines response to an agreement between Diversa Corp., a biotechnology company, and Yellowstone National Park, which would allow Diversa to use microbes for commercial purposes; includes laws on technology transfer and National Parks, and the role of National Parks; US.

Effects Of Nitrogen Deposition And Empirical Nitrogen Critical Loads For Ecoregions Of The United States, Linda H. Pardo, Mark E. Fenn, Christine L. Goodale, Linda H. Geiser, Charles T. Driscoll, Edith B. Allen, Jill S. Baron, Roland Bobbink, William D. Bowman, Christopher M. Clark, Bridget Emmett, Frank S. Gilliam, Tara L. Greaver, Sharon J. Hall, Erik A. Lilleskov, Lingli Liu, Jason A. Lynch, Knute J. Nadelhoffer, Steven S. Perakis, Molly J. Robin-Abbott, John L. Stoddard, Kathleen C. Weathers, Robin L. Dennis

Frank S. Gilliam

Human activity in the last century has led to a significant increase in nitrogen (N) emissions and atmospheric deposition. This N deposition has reached a level that has caused or is likely to cause alterations to the structure and function of many ecosystems across the United States. One approach for quantifying the deposition of pollution that would be harmful to ecosystems is the determination of critical loads. A critical load is defined as the input of a pollutant below which no detrimental ecological effects occur over the long-term according to present knowledge. The objectives of this project were to synthesize …

Effects Of Experimental Nitrogen Additions On Plant Diversity In Tropical Forests Of Contrasting Disturbance Regimes In Southern China, Xiankai Lu, Jiangming Mo, Frank S. Gilliam, Guirui Yu, Wei Zhang, Yunting Fang, Juan Huang

Frank S. Gilliam

Responses of understory plant diversity to nitrogen (N) additions were investigated in reforested forests of contrasting disturbance regimes in southern China from 2003 to 2008: disturbed forest (withharvesting of understory vegetation and litter) and rehabilitated forest (without harvesting). Experimental additions of N were administered as the following treatments: Control, 50 kg N ha1yr1, and 100kg N ha1yr1. Nitrogen additions did not significantly affect understory plant richness, density,and cover in the disturbed forest. Similarly, no significant response was found for canopy closure in thisforest. In the rehabilitated forest, species richness and density showed no significant response to Nadditions; however, understory cover …

Synthesis, Linda H. Pardo, Linda H. Geiser, Mark E. Fenn, Charles T. Driscoll, Christine L. Goodale, Edith B. Allen, Jill S. Baron, Roland Bobbink, William D. Bowman, Christopher M. Clark, Bridget Emmett, Frank S. Gilliam, Tara Greaver, Sharon J. Hall, Erik A. Lilleskov, Lingli Liu, Jason A. Lynch, Knute Nadelhoffer, Steven S. Perakis, Molly J. Robin-Abbott, John L. Stoddard, Kathleen C. Weathers

Frank S. Gilliam

Human activity in the last century has led to a substantial increase in nitrogen (N) emissions and deposition. This N deposition has reached a level that has caused or is likely to cause alterations to the structure and function of many ecosystems across the United States. One approach for quantifying the level of pollution that would be harmful to ecosystems is the critical loads approach. The critical load is dei ned as the level of a pollutant below which no detrimental ecological effect occurs over the long term according to present knowledge. The objective of this project was to synthesize …

Local Engagements With Urban Bushland: Moving Beyond Bounded Practice For Urban Biodiversity Management, Nicholas J. Gill, Gordon R. Waitt, Lesley M. Head

Nicholas J Gill

Management of ecologically significant urban green space is likely to be increasingly governed by biodiversity policy frameworks. These frameworks tend to reproduce bounded thinking and strategies that separate green space from its context and characterise people as a disturbance. Like many green spaces these ecologically significant areas are highly valued by visitors and nearby residents. Green space is important for engagement with nature, social interaction, and for respite from daily life: it is strongly connected to surrounding areas and to the lives of people who live there. The dissonance between bounded management thinking and the role of green space in …

Protistan Diversity In The Arctic: A Case Of Paleoclimate Shaping Modern Biodiversity?, Thorsten Stoeck, Jennifer Kasper, John Bunge, Chesley Leslin, Valya Ilyin, Slava S. Epstein

Slava Epstein

Background The impact of climate on biodiversity is indisputable. Climate changes over geological time must have significantly influenced the evolution of biodiversity, ultimately leading to its present pattern. Here we consider the paleoclimate data record, inferring that present-day hot and cold environments should contain, respectively, the largest and the smallest diversity of ancestral lineages of microbial eukaryotes. Methodology/Principal Findings We investigate this hypothesis by analyzing an original dataset of 18S rRNA gene sequences from Western Greenland in the Arctic, and data from the existing literature on 18S rRNA gene diversity in hydrothermal vent, temperate sediments, and anoxic water column communities. …

Living More Than Just Enough For The City: Persistence Of High-Quality Vegetation In Natural Areas In An Urban Setting, Rebecca W. Dolan, Jessica D. Stephens, Marcia E. Moore

Rebecca W. Dolan

Urban environments pose special challenges to flora, including altered disturbance regimes, habitat fragmentation, and increased opportunity for invasion by non-native species. In addition, urban natural area represents most people’s contact with nature, given the majority of the world’s population currently live in cities. We used coefficients of conservatism (C-values), a system that ranks species based on perceived fidelity to remnant native plant communities that retain ecological integrity, to quantify habitat quality of 14 sites covering 850 ha within the city of Indianapolis, Indiana, in the Midwestern United States. All sites contained significant natural area and were inventoried via intensive complete …

Local Engagements With Urban Bushland: Moving Beyond Bounded Practice For Urban Biodiversity Management, Nicholas J. Gill, Gordon R. Waitt, Lesley M. Head

Lesley Head

Management of ecologically significant urban green space is likely to be increasingly governed by biodiversity policy frameworks. These frameworks tend to reproduce bounded thinking and strategies that separate green space from its context and characterise people as a disturbance. Like many green spaces these ecologically significant areas are highly valued by visitors and nearby residents. Green space is important for engagement with nature, social interaction, and for respite from daily life: it is strongly connected to surrounding areas and to the lives of people who live there. The dissonance between bounded management thinking and the role of green space in …

Where The Tiger Survives, Biodiversity Thrives, Philip J. Nyhus, Ronald Tilson

Philip J. Nyhus

No abstract provided.

Structure And Floristic Composition Of Flood Plain Forests In The Peruvian Amazon: I. Overstorey, Gustav Nebel, Lars Peter Kvist, Jerome K. Vanclay, Henning Christensen, Luis Freitas, Juan Ruiz

Professor Jerome K Vanclay

Three Peruvian flood plain forests adjacent to the Ucayali river were sampled using nine 1 ha permanent sample plots in which stems exceeding 10 cm DBH were identified and measured. These plots were measured four times during 1993–1997. Three plots were established in each of the three forest types high restinga, low restinga, and tahuampa, characterised in part by an annual inundation of one, two and four months per year, respectively. Stem density varied from 446 to 601 per hectare, and the basal area ranged between 20 and 29 m2/ha. A total of 321 species were recorded in the nine …

Indicator Groups And Faunal Richness, Jerome K. Vanclay

Professor Jerome K Vanclay

Species richness is a popular indicator of ecosystem vitality, but is difficult to assess. Many natural resource managers seek an efficient bioindicator, but the link between candidate indicators and the richness of other taxononic groups remains elusive. A series of faunal surveys in the Mbalmayo Forest Reserve in Cameroon suggest that it may be possible to devise faunal bioindicators. The species richness of birds, of butterflies and of termites is significantly correlated with total faunal richness across eight species groups, suggesting that these groups may have potential as bioindicators, alone or in combination. Although expensive, further research is warranted because …

The Effectiveness Of Parks, Jerome K. Vanclay

Professor Jerome K Vanclay

Bruner et al. examined the effectiveness of parks in the tropics, drawing on survey data to support their contention that parks 1) have been effective; 2) need more support; and 3) should remain a central component of conservation strategies. Their conclusions remain equivocal...

Deforestation In The Tropics: Reconciling Disparities In Estimates For India, Shaily Menon, Kamaljit S. Bawa

Shaily Menon

Here we examine recent disparate estimates of deforestation obtained for India. We discuss the sources of disparity and the implications of inaccurate estimates and suggest ways in which future attempts at estimating deforestation might reconcile the disparity. Despite the importance of deforestation and its consequences, no attempt has been made to reconcile the different estimates obtained for India.

In The Heat Of The Law, It's Not Just Steam: Geothermal Resources And The Impact On Thermophile Biodiversity, Donald J. Kochan, Tiffany Grant

Donald J. Kochan

Significant research has been conducted into the utilization of geothermal resources as a ‘green’ energy source. However, minimal research has been conducted into geothermal resource utilization and depletion impacts on thermophile biodiversity. Thermophiles are organisms which have adapted over millions of year to extreme temperature and chemical compositions and exist in hot springs and other geothermal resources. Their ability to withstand high temperatures makes them invaluable to scientific and medical research. Current federal and California case law classify geothermal resources as a mineral, not a water resource. Acquisition of rights to develop a geothermal resource owned or reserved by the …

“La Responsabilidad Medioambiental En La Unión Europea: La Directiva 2004/35/Ce”, Luis González Vaqué

Luis González Vaqué

Sumario: I. INTRODUCCIÓN. II. LA DIRECTIVA 2004/35/CE. 1 Objetivos y ámbito de aplicación. 2 Medidas preventivas. 3 Medidas reparadoras. 4 La legitimación para solicitar que se adopten medidas. 5 Garantía financiera. 6 Cooperación entre los Estados miembros. III. CONCLUSIÓN

A Multidimensional Approach For Detecting Species Patterns In Malagasy Vertebrates, Anne D. Yoder, Link E. Olson, Carol Hanley, Kellie L. Heckman, Rodin Rasoloarison, Amy L. Russell, Julie Ranivo, Voahangy Soarimalala, K. Praveen Karanth, Achille P. Raselimanana, Steven M. Goodman

Amy L. Russell

Seed Security For Food Security, Mutizwa Mkute, Doreen Mnyulwa, Sarah Kimakwa

Sarah Kimakwa

'Farmers' dependence on agro-companies for agricultural inputs has been growing in east and southern Africa and beyond. At the same time, local and indigenous knowledge about seed selection, saving and multiplying has been lost.

This manual for development workers outlines traditional and current methods of saving seed. It begins with some basic ground rules for working with communities. The second section gives a comprehensive guide to different ways of propagating plants and saving seed from a full range of common crops and trees. Finally, the third part offers a brief outline of the background history and the current issues and …

A Vegetation Based Approach To Biodiversity Gap Analysis In The Agastyamalai Region, Western Ghats, India, B. R. Ramesh, Shaily Menon, Kamaljit S. Bawa

Shaily Menon

Protected areas in India have historically been established on an ad hoc basis with little attention to the conservation value of an area. This study focuses on a set of protected areas in the Agastyamalai region of the Western Ghats (WG), India. We examine forest loss and land-use changes in the study area from the early 1900s to 1960 and from 1960 to 1990. We use GIS to perform a biodiversity gap analysis of the protected areas in the study site. We produce a detailed map of existing floristic types and use it to generate layers corresponding to floristic species …

Applications Of Geographic Information Systems, Remote-Sensing, And A Landscape Ecology Approach To Biodiversity Conservation In The Western Ghats, Shaily Menon, Kamaljit S. Bawa

Shaily Menon

The mountains along the west coast of peninsular India, the Western Ghats, constitute one of the unique biological regions of the world. Rapidly occurring land-cover and land-use change in the Western Ghats has serious implications for the biodiversity of the region. Both landscape changes as well as the distribution of biodiversity are phenomena with strong spatial correlates. Recent developments in remote-sensing technology and Geographic Information Systems (GIS) allow the use of a landscape ecology and spatial analysis approach to the problem of deforestation and biodiversity conservation in the Western Ghats. Applications of this approach include analyses of land-cover and land-use …

Using Biodiversity Data To Assess Species--Habitat Relationships In Glacier National Park, Montana, Diane M. Debinski, Peter F. Brussard

Diane M. Debinski

Biodiversity surveys are becoming increasingly popular. However, standard analysis techniques for these data have not yet been developed. This paper explores the use of multivariate ordination techniques for assessing species—habitat relationships using biodiversity data. The research was conducted in Glacier National Park, Montana, and birds and butterflies were chosen as the taxonomic groups of study. Biodiversity assessment sites were established throughout a range of habitats and monitored from 1987 through 1989. Presence/absence sampling over the total number of sampling sites was used to classify species commonness and rarity. Approximately 86% of the historically recorded butterflies and 70% of the historically …