Life Sciences Commons^™

Effects Of Water Table Depth And Edaphic Characteristics On Plant Diversity In A Southern Mississippi Pitcher Plant Bog, Patrick Kirby

Master's Theses

This study examined the effects that water table depth and soil characteristics have on plant species richness and species composition within pitcher plant bogs across seasons. Eight piezometers were installed at random distances to monitor long-term water table depth and pressure fluctuations along a ~710-meter line transect traversing upland and bog habitats. Vegetation sampling quadrats (n=128) were set up near each piezometer. Cover data and water table depths were collected in spring and late summer. Soil samples collected from each treatment group were used to obtain soil texture and nutrient data. The summer collection period yielded a total gdiversity of …

Carbonate Chemistry Characterization In A Low-Inflow Estuary With Recent Seagrass Loss, Jolie Higgins

Master's Theses

Estuaries are dynamic environments that are strongly affected by natural variability, as well as direct and indirect anthropogenic impacts. A better understanding of the drivers of carbon fluxes and biogeochemical variability in estuarine systems is needed, particularly with the increasing threat of ocean acidification. Morro Bay in Central California is a small nationally protected estuary, with seasonally low freshwater inputs. Since 2007, the bay has experienced a significant loss of native seagrass, Zostera marina, which is an important component of the marine ecosystem. Because seagrass photosynthesis decreases carbon dioxide and increases oxygen in the water column, the loss of seagrass …

A Machine Learning Technology For Rapid Detection Of Carbon Nanotubes/Dna Hybridization In Biosensor Healthcare Applications, Steven K. Ang

Master's Theses

In molecular biology, the term “DNA hybridization” generally refers to the process of forming a double stranded nucleic acid from joining two complementary strands of DNA. The degree of genetic similarity of the DNA resulting from hybridization can be detected ei ther by using the chemical characteristics of DNA samples or by utilizing reliable biosensors which transform the chemical characteristics into a source of electrical measurements. In past research about such sensors, known as DNA Hybridization Detection Systems, the thermal and electrical characteristics of carbon nanotubes are utilized to detect whether hybridization takes place or not. However, human interpretation of …

Gogo: An Improved Algorithm To Measure The Semantic Similarity Between Gene Ontology Terms, Chenguang Zhao

Master's Theses

Measuring the semantic similarity between Gene Ontology (GO) terms is an essential step in functional bioinformatics research. We implemented a software named GOGO for calculating the semantic similarity between GO terms. GOGO has the advantages of both information-content-based and hybrid methods, such as Resnik’s and Wang’s methods. Moreover, GOGO is relatively fast and does not need to calculate information content (IC) from a large gene annotation corpus but still has the advantage of using IC. This is achieved by considering the number of children nodes in the GO directed acyclic graphs when calculating the semantic contribution of an ancestor node …

Nekton Usage Of High Marsh Habitats In Connecticut Salt Marshes, With Emphasis On The Genus Fundulus, Amanda L. Tucker

Master's Theses

Large scale habitat use patterns of salt marsh nekton are fairly well understood, but small-scale patterns within marsh habitats are not as well known, including the genus Fundulus, an important salt marsh species. This is an area of study that needs more research, particularly in light of increases in salt marshes loss within the last several decades. Salt marshes are a primary habitat for Fundulus species. Sea level rise and urbanization have been major contributors to salt marsh loss and alteration.

Salt marshes are highly variable habitats both spatially and temporally due to tidal cycles, high and low marsh areas …

Effectiveness Of Windrow Composting Methodology In Killing A Thermo-Tolerant Species Of Salmonella During Mortality Composting, Spencer Gabriel Myers

Master's Theses

In a large agricultural operation, such as the one at Cal Poly San Luis Obispo, disposal of deceased animals is an immense issue. The cost of transporting and rendering every dead animal is inhibitory to the general function of the agricultural operations and their thin budget. Therefore, we propose that composting mortalities could be an economical alternative. Composting is a recognized method for taking animal waste products along with carbon waste and turning it into a pathogen-free, nutrient-rich topsoil. Carcass composting is in fact performed in other countries and states to varying degrees of success. However, the California EPA limits …

Effects Of Fragmentation On Species Retention In National Parks, Liz Tanner

Master's Theses

The North American landscape is becoming increasingly fragmented, resulting in habitat patches with decreased area and increased isolation. Often, these patches exist as protected areas, such as national parks. The Theory of Island Biogeography is frequently used as a model for these patches, where each park serves as an ‘island’ surrounded by a ‘sea’ of human-altered habitats. As such, species richness and extinctions in a park might be explained by its area. For this study, I used regression models to examine the relationship between richness and area, as well as extinctions and area, for mammals and birds in national parks. …

The Effect Of Vegetative Structure On Nest-Burrow Selection By The Western Burrowing Owl: Comparing Traditional Methods To Photogrammetry With An Unmanned Aerial System, Dylan J. Steffen

Master's Theses

The shortgrass prairie ecoregion in the United States has been reduced to 52% of its historical extent, contributing to reduced habitat for native species. One such species is the Burrowing Owl (Athene cunicularia). The Western Burrowing Owl subspecies (A. c. hypugaea) is listed as a Species of Special Concern in nearly every western and midwestern state, including Kansas where it is designated as a Tier II Species of Greatest Conservation Need. Habitat destruction due to conversion to cropland, increasing use of pesticides, and reduction in burrowing mammal abundance are the primary threats that have led to …