Life Sciences Commons^™

Reducing Protected Lands In A Hotspot Of Bee Biodiversity: Bees Of Grand Staircase-Escalante National Monument, Joseph S. Wilson, Matt Kelly, Olivia Messinger Carril

Biology Faculty Publications

Grand Staircase-Escalante National Monument is a federally protected area found in central southern Utah. Designated in 1996 by President William J. Clinton, it was recently reduced in size by President Donald J. Trump in a proclamation that turned the one large monument into three smaller ones. A long-term, standardized study of the bees had been conducted from 2000–2003, revealing 660 species. The bee communities of the area are characterized by being spatially heterogeneous; most of the bees occur in isolated areas, with only a few being both abundant and widespread. Here we examine what affect the recent resizing of the …

Polyvinylidene Difluoride Piezoelectric Electrospun Nanofibers: Review In Synthesis, Fabrication, Characterizations, And Applications, Zainab Abu Alhasssan, Yasmeen S. Burezq, Remya Nair, Nader Shehata

Biology Faculty Publications

This review article highlights the methods and principles used for PVDF nanofiber creation and the use of these nanofibers in different fields by utilizing its piezoelectric performance, etc. The studies include different techniques to improve the alignment and piezoelectric behavior of nanofibers. The pressure versus sensitivity behavior of PVDF substrate is thoroughly analyzed. The optimum conditions (of experimental parameters) of the electrospinning technique are carefully studied to improve the structure, alignment, and performance of the generated nanofiber mats. In addition to experimental methods, the preparation of nanocomposites with carbon nanotubes (CNTs) also can improve the structure, alignment, and piezoelectric performance. …

Long-Term Experimental Hybridisation Results In The Evolution Of A New Sex Chromosome In Swordtail Fish, Paolo Franchini, Julia C. Jones, Peiwen Xiong, Susanne Kneitz, Zachariah Gompert, Wesley C. Warren, Ronald B. Walter, Axel Meyer, Manfred Schartl

Biology Faculty Publications

The remarkable diversity of sex determination mechanisms known in fish may be fuelled by exceptionally high rates of sex chromosome turnovers or transitions. However, the evolutionary causes and genomic mechanisms underlying this variation and instability are yet to be understood. Here we report on an over 30-year evolutionary experiment in which we tested the genomic consequences of hybridisation and selection between two Xiphophorus fish species with different sex chromosome systems. We find that introgression and imposing selection for pigmentation phenotypes results in the retention of an unexpectedly large maternally derived genomic region. During the hybridisation process, the sex-determining region of …

The Contribution Of The Descending Pain Modulatory Pathway In Opioid Tolerance, Lindsay M. Lueptow, Amanda K. Fakira, Erin N. Bobeck

Biology Faculty Publications

Opioids remain among the most effective pain-relieving therapeutics. However, their long-term use is limited due to the development of tolerance and potential for addiction. For many years, researchers have explored the underlying mechanisms that lead to this decreased effectiveness of opioids after repeated use, and numerous theories have been proposed to explain these changes. The most widely studied theories involve alterations in receptor trafficking and intracellular signaling. Other possible mechanisms include the recruitment of new structural neuronal and microglia networks. While many of these theories have been developed using molecular and cellular techniques, more recent behavioral data also supports these …

Dispersal In Host–Parasitoid Interactions: Crop Colonization By Pests And Specialist Enemies, Edward W. Evans

Biology Faculty Publications

Interactions of insect pests and their natural enemies increasingly are being considered from a metapopulation perspective, with focus on movements of individuals among habitat patches (e.g., individual crop fields). Biological control may be undercut in short-lived crops as natural enemies lag behind the pests in colonizing newly created habitat. This hypothesis was tested by assessing parasitism of cereal leaf beetle (Oulema melanopus) and alfalfa weevil (Hypera postica) larvae at varying distances along transects into newly planted fields of small grains and alfalfa in northern Utah. The rate of parasitism of cereal leaf beetles and alfalfa weevils …

Evolution Of Nuchal Glands, Unusual Defensive Organs Of Asian Natricine Snakes (Serpentes: Colubridae), Inferred From A Molecular Phylogeny, Hirohiko Takeuchi, Alan H. Savitzky, Li Ding, Anslem De Silva, Indraneil Das, Tao Thien Nguyen, Tein-Shun Tsai, Teppei Jono, Guang-Xiang Zhu, Dharshani Mahaulpatha, Yezhong Tang, Akira Mori

Biology Faculty Publications

A large body of evidence indicates that evolutionary innovations of novel organs have facilitated the subsequent diversification of species. Investigation of the evolutionary history of such organs should provide important clues for understanding the basis for species diversification. An Asian natricine snake, Rhabdophis tigrinus, possesses a series of unusual organs, called nuchal glands, which contain cardiotonic steroid toxins known as bufadienolides. Rhabdophis tigrinus sequesters bufadienolides from its toad prey and stores them in the nuchal glands as a defensive mechanism. Among more than 3,500 species of snakes, only 17 Asian natricine species are known to possess nuchal glands or …

Environment And Past Land Use Together Predict Functional Diversity In A Temperate Forest, Meghna Krishnadas, Noelle G. Beckman, Jaun Carlos Peñagos Zuluaga, Yan Zhu, James Whitacre, John W. Wenzel, Simon A. Queenborough, Lize S. Comita

Biology Faculty Publications

Environment and human land use both shape forest composition. Abiotic conditions sift tree species from a regional pool via functional traits that influence species’ suitability to the local environment. In addition, human land use can modify species distributions and change functional diversity of forests. However, it is unclear how environment and land use simultaneously shape functional diversity of tree communities. Land-use legacies are especially prominent in temperate forest landscapes that have been extensively modified by humans in the last few centuries. Across a 900-ha temperate deciduous forest in the northeastern United States, comprising a mosaic of different-aged stands due to …

An Investigation Into Tetrodotoxin (Ttx) Levels Associated With The Red Dorsal Spots In Eastern Newt (Notophthalmus Viridescens) Efts And Adults, Mackenzie M. Spicer, James P. Strange, Trevor L. Chapman, Edmund D. Brodie Jr., Edmund D. Brodie Jr., Brian G. Gall

Biology Faculty Publications

We investigated the concentration of tetrodotoxin (TTX) in sections of skin containing and lacking red dorsal spots in both Eastern newt (Notophthalmus viridescens) efts and adults. Several other species, such as Pleurodeles waltl and Echinotriton andersoni, have granular glands concentrated in brightly pigmented regions on the dorsum, and thus we hypothesized that the red dorsal spots of Eastern newts may also possess higher levels of TTX than the surrounding skin. We found no difference between the concentrations of TTX in the red spots as compared to neighboring skin lacking these spots in either efts or adults. However, …

Nurudea Zhengii Ren, A New Species Of The Rhus Gall Aphids (Aphididae: Eriosomatinae: Fordini) From Eastern China, Zhu-Mei Ren, Xu Su, Carol D. Von Dohlen, Jun Wen

Biology Faculty Publications

A new Rhus gall aphid species Nurudea zhengii Ren, sp. nov. collected from the Mountain Qixing in Shangrao County, Jiangxi Province, China is described and illustrated from alate viviparous female. The new species differs from the other Nurudea species in the length and proportion of antennal segments, the structure of antennal secondary sensilla, and the flower-like shape of the galls that are formed on its primary host. Its primary host plant is Rhus hypoleuca, whereas other Nurudea species are on R. chinensis.

Plasmonic-Ceria Nanoparticles As Fluorescence Intensity And Lifetime Quenching Optical Sensor, Nader Shehata, Effat Samir, Ishac Kandas

Biology Faculty Publications

Ceria nanoparticles have been recently used as an optical fluorescent material with visible emission under ultraviolet excitation, due to the formation of trivalent cerium ions with corresponding oxygen vacancies. This paper introduces the enhancement of both fluorescence emission and lifetime through adding gold nanoparticles. The reason is due to possible coupling between the plasmonic resonance of gold nanoparticles and the fluorescence emission of ceria that has been achieved, along with enhanced formation of trivalent cerium ions. Both factors lead to higher fluorescence intensity peaks and shorter fluorescence lifetimes. As an application, gold-ceria nanoparticles have been used as an optical sensing …

Multiple Facets Of Biodiversity Drive The Diversity-Stability Relationship, Dylan Craven, Nico Eisenhauer, William D. Pearse, Yann Hautier, Christiane Roscher, Forest Isbell, Michael Bahn, Carl Beierkuhnlein, Gerhard Bönisch, Nina Buchmann, Chaeho Byun, Jane A. Catford, Bruno E.L. Cerabolini, J. Hans C. Cornelissen, Joseph M. Craine, Enrica De Luca, Anne Ebeling, John N. Griffin, Andy Hector, Jes Hines, Anke Jentsch, Jens Kattge, Jürgen Kreyling, Vojtech Lanta, Nathan Lemoine, Sebastian T. Meyer, Vanessa Minden, Vladimir Onipchenko, H. Wayne Polley, Peter B. Reich, Jasper Van Ruijven, Brandon Schamp, Melinda D. Smith, Nadejda A. Soudzilovskaia, David Tilman, Alexandra Weigelt, Brian Wilsey, Peter Manning

Biology Faculty Publications

A significant body of evidence has demonstrated that biodiversity stabilizes ecosystem functioning over time in grassland ecosystems. However, the relative importance of different facets of biodiversity underlying the diversity–stability relationship remains unclear. Here we used data from 39 biodiversity experiments and structural equation modeling to investigate the roles of species richness, phylogenetic diversity, and both the diversity and community-weighted mean of functional traits representing the ‘fast–slow’ leaf economics spectrum in driving the diversity–stability relationship. We found that high species richness and phylogenetic diversity stabilize biomass production via enhanced asynchrony. Contrary to our hypothesis, low phylogenetic diversity also enhances ecosystem stability …

Mobile Elements Shape Plastome Evolution In Ferns, Tanner A. Robison, Amanda L. Grusz, Paul G. Wolf, Jeffrey P. Mower, Blake D. Fauskee, Karla Sosa, Eric Schuettpelz

Biology Faculty Publications

Plastid genomes display remarkable organizational stability over evolutionary time. From green algae to angiosperms, most plastid genomes are largely collinear, with only a few cases of inversion, gene loss, or, in extremely rare cases, gene addition. These plastome insertions are mostly clade-specific and are typically of nuclear or mitochondrial origin. Here, we expand on these findings and present the first family-level survey of plastome evolution in ferns, revealing a novel suite of dynamic mobile elements. Comparative plastome analyses of the Pteridaceae expose several mobile open reading frames that vary in sequence length, insertion site, and configuration among sampled taxa. Even …

Generalist And Specialist Mite Herbivores Induce Similar Defense Responses In Maize And Barley But Differ In Susceptibility To Benzoxazinoids, Huyen Bui, Robert Greenhalgh, Alice Ruckert, Gunbharpur S. Gill, Sarah Lee, Ricardo A. Ramirez, Richard M. Clark

Biology Faculty Publications

While substantial progress has been made in understanding defense responses of cereals to insect herbivores, comparatively little is known about responses to feeding by spider mites. Nevertheless, several spider mite species, including the generalist Tetranychus urticae and the grass specialist Oligonychus pratensis, cause damage on cereals such as maize and wheat, especially during drought stress. To understand defense responses of cereals to spider mites, we characterized the transcriptomic responses of maize and barley to herbivory by both mite species, and included a wounding control against which modulation of defenses could be tested. T. urticae and O. pratensis induced highly …

Molecular Adaptations For Sensing And Securing Prey And Insight Into Amniote Genome Diversity From The Garter Snake Genome, Blair W. Perry, Daren C. Card, Joel W. Mcglothlin, Giulia I.M. Pasquesi, Richard H. Adams, Drew R. Schield, Nicole R. Hales, Andrew B. Corbin, Jeffery P. Demuth, Federico G. Hoffmann, Michael W. Vandewege, Ryan K. Schott, Nihar Bhattacharyya, Belinda S.W. Chang, Nicholas R. Casewell, Gareth Whiteley, Jacobo Reyes-Velasco, Stephen P. Mackessy, Tony Gamble, Kenneth B. Storey, Kyle K. Biggar, Courtney N. Passow, Chih-Horng Kuo, Suzanne E. Mcgaugh, Anne M. Bronikowski, A.P. Jason De Koning, Scott V. Edwards, Michael E. Pfrender, Patrick Minx, Edmund D. Brodie Jr., Edmund D. Brodie Jr., Wesley C. Warren, Todd A. Castoe

Biology Faculty Publications

Colubridae represents the most phenotypically diverse and speciose family of snakes, yet no well-assembled and annotated genome exists for this lineage. Here, we report and analyze the genome of the garter snake, Thamnophis sirtalis, a colubrid snake that is an important model species for research in evolutionary biology, physiology, genomics, behavior, and the evolution of toxin resistance. Using the garter snake genome, we show how snakes have evolved numerous adaptations for sensing and securing prey, and identify features of snake genome structure that provide insight into the evolution of amniote genomes. Analyses of the garter snake and other squamate reptile …

Prioritizing Phylogenetic Diversity Captures Functional Diversity Unreliably, Florent Mazel, Matthew W. Pennell, Marc W. Cadotte, Sandra Diaz, Giulio Valentino Dalla Riva, Richard Grenyer, Fabien Leprieur, Arne O. Mooers, David Mouillot, Caroline M. Tucker, William D. Pearse

Biology Faculty Publications

In the face of the biodiversity crisis, it is argued that we should prioritize species in order to capture high functional diversity (FD). Because species traits often reflect shared evolutionary history, many researchers have assumed that maximizing phylogenetic diversity (PD) should indirectly capture FD, a hypothesis that we name the “phylogenetic gambit”. Here, we empirically test this gambit using data on ecologically relevant traits from >15,000 vertebrate species. Specifically, we estimate a measure of surrogacy of PD for FD. We find that maximizing PD results in an average gain of 18% of FD relative to random choice. However, this average …

Deciphering The Biology Of Cryptophyllachora Eurasiatica Gen. Et Sp. Nov., An Often Cryptic Pathogen Of An Allergenic Weed, Ambrosia Artemisiifolia, Levente Kiss, Gábor M. Kovács, Károly Bóka, Gyula Bohár, Krisztina Varga Bohárné, Márk Z. Németh, Susumu Takamatsu, Hyeon-Dong Shin, Vera Hayova, Claudia Nischwitz, Marion K. Seier, Harry C. Evans, Paul F. Cannon, Gavin James Ash, Roger G. Shivas, Heinz Müller-Schärer

Biology Faculty Publications

A little known, unculturable ascomycete, referred to as Phyllachora ambrosiae, can destroy the inflorescences of Ambrosia artemisiifolia, an invasive agricultural weed and producer of highly allergenic pollen. The fungus often remains undetectable in ragweed populations. This work was conducted to understand its origin and pathogenesis, a prerequisite to consider its potential as a biocontrol agent. The methods used included light and transmission electron microscopy, nrDNA sequencing, phylogenetic analyses, artificial inoculations, and the examination of old herbarium and recent field specimens from Hungary, Korea, Ukraine and USA. The Eurasian and the North American specimens of this fungus were to …

Fern Genomes Elucidate Land Plant Evolution And Cyanobacterial Symbioses, Fay-Wei Li, Paul Brouwer, Lorenzo Carretero-Paulet, Shifeng Cheng, Jan De Vries, Pierre-Marc Delaux, Ariana Eily, Nils Koppers, Li-Yaung Kuo, Zheng Li, Mathew Simenc, Ian Small, Eric Wafula, Stephany Angarita, Michael S. Barker, Andrea Bräutigam, Claude Depamphilis, Sven Gould, Prashant S. Hosmani, Yao-Moan Huang, Bruno Huettel, Yoichiro Kato, Xin Liu, Steven Maere, Rose Mcdowell, Lukas A. Mueller, Klaas G. J. Nierop, Stefan A. Rensing, Tanner A. Robison, Carl J. Rothfels, Erin M. Sigel, Yue Song, Prakash R. Timilsena, Yves Van De Peer, Hongli Wang, Per K. I. Wilhelmsson, Paul G. Wolf, Xun Xu, Joshua P. Der, Henriette Schluepmann, Gane K.-S. Wong, Kathleen M. Pryer

Biology Faculty Publications

Ferns are the closest sister group to all seed plants, yet little is known about their genomes other than that they are generally colossal. Here, we report on the genomes of Azolla filiculoides and Salvinia cucullata (Salviniales) and present evidence for episodic whole-genome duplication in ferns—one at the base of ‘core leptosporangiates’ and one specific to Azolla. One fern-specific gene that we identified, recently shown to confer high insect resistance, seems to have been derived from bacteria through horizontal gene transfer. Azolla coexists in a unique symbiosis with N2-fixing cyanobacteria, and we demonstrate a clear pattern of cospeciation between …

Remotely Sensed Canopy Nitrogen Correlates With Nitrous Oxide Emissions In A Lowland Tropical Rainforest, Fiona M. Soper, Benjamin W. Sullivan, Megan K. Nasto, Brooke B. Osborne, David Bru, Christopher S. Balzotti, Phillip G. Taylor, Gregory P. Asner, Alan R. Townsend, Laurent Philippot, Stephen Porder, Cory C. Cleveland

Biology Faculty Publications

Tropical forests exhibit significant heterogeneity in plant functional and chemical traits that may contribute to spatial patterns of key soil biogeochemical processes, such as carbon storage and greenhouse gas emissions. Although tropical forests are the largest ecosystem source of nitrous oxide (N2O), drivers of spatial patterns within forests are poorly resolved. Here, we show that local variation in canopy foliar N, mapped by remote‐sensing image spectroscopy, correlates with patterns of soil N2O emission from a lowland tropical rainforest. We identified ten 0.25 ha plots (assemblages of 40–70 individual trees) in which average remotely‐sensed canopy N fell above or below the …

Optical Fluorescent Spider Silk Electrospun Nanofibers With Embedded Cerium Oxide Nanoparticles, Ishac Kandas, Nader Shehata, Ibrahim Hassounah, Patrik Sobolciak, Igor Krupa, Randolph V. Lewis

Biology Faculty Publications

The work demonstrates an electrospun nanocomposite of recombinant spider silk protein (rSSp) nanofibers with embedded cerium oxide (ceria) nanoparticles. RSSP (MaSp1) has been produced, extracted from goat milk, and fabricated into nanofibers using an electrospinning process. The resulting electrospun nanofibers have a mean diameter of ∼50  nm. Furthermore, ceria nanoparticles of mean diameterions, associated with formed oxygen vacancies. The formed nanocomposite shows promising mechanical properties such as the Young’s modulus, elasticity (or elongation at break), and toughness. In addition, the electrospun mat becomes fluorescent with 520-nm emission upon exposure to UV light, due to excitation of the optically active ceria …

Investigating The Viral Ecology Of Global Bee Communities With High-Throughput Metagenomics, David A. Galbraith, Zachary L. Fuller, Allyson M. Ray, Axel Brockmann, Maryann Frazier, Mary W. Gikungu, J. Francisco Iturralde Martinez, Karen M. Kapheim, Jeffrey T. Kerby, Sarah D. Kocher, Oleksiy Losyev, Elliud Muli, Harland M. Patch, Cristina Rosa, Joyce M. Sakamoto, Scott Stanley, Anthony D. Vaudo, Christina M. Grozinger

Biology Faculty Publications

Bee viral ecology is a fascinating emerging area of research: viruses exert a range of effects on their hosts, exacerbate the impacts of other environmental stressors, and, importantly, are readily shared across multiple bee species in a community. However, our understanding of bee viral communities is limited, as it is primarily derived from studies of North American and European Apis mellifera populations. Here, we examined viruses in populations of A. mellifera and 11 other bee species from 9 countries, across 5 continents and Oceania. We developed a novel pipeline to rapidly, inexpensively, and robustly screen for bee viruses. This pipeline …

Electrospun Pva Polymer Embedded With Ceria Nanoparticles As Silicon Solar Cells Rear Surface Coaters For Efficiency Improvement, Effat Samir, Mohamed Salah, Ali Hajjiah, Nader Shehata, Marwa Fathy, Aya Hamed

Biology Faculty Publications

This paper introduces electrospun nanofibers embedded with ceria nanoparticles as silicon solar cells coaters, showing their influence on the solar cells efficiency. Ceria nanoparticles can be synthesized to have formed oxygen vacancies (O-vacancies), which are associated with converting cerium ions from the Ce4+ state ions to the Ce3+ ones. These O-vacancies follow the rule of improving silicon solar cellconductivity through the hopping mechanism. Besides, under violet excitation, the reduced trivalent cerium Ce3+ ions are directly responsible for down-converting the un-absorbed violet or ultra-violet (UV) wavelengths to a resulted green fluorescence emission at ~520 nm. These are absorbed through the silicon …

Partnering With A Pest: Genomes Of Hemlock Woolly Adelgid Symbionts Reveal Atypical Nutritional Provisioning Patterns In Dual-Obligate Bacteria, Kathryn M. Weglarz, Nathan P. Havill, Gaelen R. Burke, Carol D. Von Dohlen

Biology Faculty Publications

Nutritional bacterial symbionts enhance the diets of sap-feeding insects with amino acids and vitamins missing from their diets. In many lineages, an ancestral senior symbiont is joined by a younger junior symbiont. To date, an emergent pattern is that senior symbionts supply a majority of amino acids, and junior symbionts supply a minority. Similar to other hemipterans, adelgids harbor obligate symbionts, but have higher diversity of bacterial associates, suggesting a history of symbiont turnover. The metabolic roles of dual symbionts in adelgids and their contributions to the consortium are largely unexplored. Here, we investigate the symbionts of Adelges tsugae, …

Sensitive High-Frequency Hearing In Earless And Partially Eared Harlequin Frogs (Atelopus), Molly C. Womack, Jakob Christensen-Dalsgaard, Luis A. Coloma, Kim L. Hoke

Biology Faculty Publications

Harlequin frogs, genus Atelopus, communicate at high frequencies despite most species lacking a complete tympanic middle ear that facilitates high-frequency hearing in most anurans and other tetrapods. Here, we tested whether Atelopus are better at sensing high-frequency acoustic sound compared with other eared and earless species in the Bufonidae family, determined whether middle ear variation within Atelopus affects hearing sensitivity and tested potential hearing mechanisms in Atelopus. We determined that at high frequencies (2000‚Äì4000‚ÄÖHz), Atelopus are 10‚Äì34‚ÄÖdB more sensitive than other earless bufonids but are relatively insensitive to mid-range frequencies (900‚Äì1500‚ÄÖHz) compared with eared bufonids. Hearing among Atelopus species is …

Lanthanide-Doped Ceria Nanoparticles As Backside Coaters To Improve Silicon Solar Cell Efficiency, Ali Hajjiah, Effat Samir, Nader Shehata, Mohamed Salah

Biology Faculty Publications

This paper introduces lanthanide-doped ceria nanoparticles as silicon solar cell back-side coaters, showing their influence on the solar cell efficiency. Ceria nanoparticles can be synthesized to have formed oxygen vacancies (O-vacancies), which are associated with converting cerium ions from the Ce⁴⁺ state ions to the Ce³⁺ ones. These O-vacancies follow the rule of improving silicon solar cell conductivity through a hopping mechanism. Besides, under near-ultra violet (near-UV) excitation, the reduced trivalent cerium Ce³⁺ ions are directly responsible for down converting the un-absorbed UV wavelengths to a resultant green photo-luminescence emission at ~520 nm, which is absorbed through …

On The Relationship Between Phylogenetic Diversity And Trait Diversity, Caroline M. Tucker, T. Jonathan Davies, Marc W. Cadotte, William D. Pearse

Biology Faculty Publications

Niche differences are key to understanding the distribution and structure of biodiversity. To examine niche differences, we must first characterize how species occupy niche space, and two approaches are commonly used in the ecological literature. The first uses species traits to estimate multivariate trait space (so‐called functional trait diversity, FD); the second quantifies the amount of time or evolutionary history captured by a group of species (phylogenetic diversity, PD). It is often—but controversially—assumed that these putative measures of niche space are at a minimum correlated and perhaps redundant, since more evolutionary time allows for greater accumulation of trait changes. This …

The Indestructible Insect: Velvet Ants From Across The United States Avoid Predation By Representatives From All Major Tetrapod Clades, Brian G. Gall, Kari L. Spivey, Trevor L. Chapman, Robert J. Delph, Edmund D. Brodie Jr., Joseph S. Wilson

Biology Faculty Publications

Velvet ants are a group of parasitic wasps that are well known for a suite of defensive adaptations including bright coloration and a formidable sting. While these adaptations are presumed to function in antipredator defense, observations between potential predators and this group are lacking. We conducted a series of experiments to determine the risk of velvet ants to a host of potential predators including amphibians, reptiles, birds, and small mammals. Velvet ants from across the United States were tested with predator’s representative of the velvet ants native range. All interactions between lizards, free-ranging birds, and a mole resulted in the …

Target Sequence Capture Of Nuclear-Encoded Genes For Phylogenetic Analysis In Ferns, Paul G. Wolf, Tanner A. Robison, Matthew G. Johnson, Michael A. Sundue, Weston L. Testo, Carl J. Rothfels

Biology Faculty Publications

Premise of the Study

Until recently, most phylogenetic studies of ferns were based on chloroplast genes. Evolutionary inferences based on these data can be incomplete because the characters are from a single linkage group and are uniparentally inherited. These limitations are particularly acute in studies of hybridization, which is prevalent in ferns; fern hybrids are common and ferns are able to hybridize across highly diverged lineages, up to 60 million years since divergence in one documented case. However, it not yet clear what effect such hybridization has on fern evolution, in part due to a paucity of available biparentally inherited …

Admixture, Evolution, And Variation In Reproductive Isolation In The Boechera Puberula Clade, Martin P. Schilling, Zachariah Gompert, Fay-Wei Li, Michael D. Windham, Paul G. Wolf

Biology Faculty Publications

Background

Hybridization is very common in plants, and the incorporation of new alleles into existing lineages (i.e. admixture) can blur species boundaries. However, admixture also has the potential to increase standing genetic variation. With new sequencing methods, we can now study admixture and reproductive isolation at a much finer scale than in the past. The genus Boechera is an extraordinary example of admixture, with over 400 hybrid derivates of varying ploidy levels. Yet, few studies have assessed admixture in this genus on a genomic scale.

Results

In this study, we used Genotyping-by-Sequencing (GBS) to clarify the evolution of the Boechera …

Routes Of Pesticide Exposure In Solitary, Cavity-Nesting Bees, Andi M. Kopit, Theresa L. Pitts-Singer

Biology Faculty Publications

Declines of pollinator health and their populations continue to be commercial and ecological concerns. Agricultural practices, such as the use of agrochemicals, are among factors attributed to honey bee (Apis mellifera L. (Hymenoptera: Apidae)) population losses and are also known to have negative effects on populations of managed non-Apis pollinators. Although pesticide registration routinely requires evaluation of impacts on honey bees, studies of this social species may not reveal important pesticide exposure routes where managed, solitary bees are commonly used. Studies of solitary bees offer additional bee models that are practical from the aspect of availability, known rearing …

The Natural Variance Of The Arabidopsis Floral Secondary Metabolome, Takayuki Tohge, Monica Borghi, Alisdair R. Fernie

Biology Faculty Publications

Application of mass spectrometry-based metabolomics enables the detection of genotype-related natural variance in metabolism. Differences in secondary metabolite composition of flowers of 64 Arabidopsis thaliana (Arabidopsis) natural accessions, representing a considerable portion of the natural variation in this species are presented. The raw metabolomic data of the accessions and reference extracts derived from flavonoid knockout mutants have been deposited in the MetaboLights database. Additionally, summary tables of floral secondary metabolite data are presented in this article to enable efficient re-use of the dataset either in metabolomics cross-study comparisons or correlation-based integrative analysis of other metabolomic and phenotypic features such as …