Life Sciences Commons^™

The Evolution Of Diet Breadth In Melissodes Bees (Apidae: Eucerini), Karen W. Wright

Biology ETDs

The relationship between phytophagous insects and their host plants has interested scientists since Darwinian times. Using modern phylogenetic inference, we are able to investigate these patterns using, not only the phylogenies of the insects, but the evolutionary relationships among the plants they feed on as well. The relationships between bees and the plants they pollinate were traditionally seen as mutualistic and were treated separately from the research investigating the antagonistic relationships between phytophagous insects and their host plants. However, recent phylogenetic studies have made great progress including bee-host relationships in with the larger body of work on phytophagous insects.

The …

Chemically Modified Monolayer Surfaces Influence Valvular Interstitial Cell Attachment And Differentiation For Heart Valve Tissue Engineering, Matthew N. Rush

Nanoscience and Microsystems ETDs

As a cell mediated-process, valvular heart disease (VHD) results in significant morbidity and mortality world-wide. In the US alone, valvular heart disease VHD is estimated to affect 2.5% of the population with a disproportionate impact on an increasing elderly populous. It is well understood that the primary driver for valvular calcification is the differentiation of valvular interstitial cells (VICs) into an osteoblastic-like phenotype. However, the factors leading to the onset of osteoblastic-like VICs (obVICs) and resulting calcification are not fully understood and a more complete characterization of VIC differentiation and phenotypic change is required before treatment of valve disease or …

Shedding Light On The Role Of Opaque1 In Asymmetric Cell Division In Maize, Janette Y. Mendoza

Biology ETDs

Asymmetric cell division (ACD) is important for cell fate and tissue patterning. Many aspects of ACD in plants, however, are still unclear. The process of ACD can be broadly broken down into three phases: (1) cell polarization, (2) division plane establishment and maintenance, and (3) cell division and cytokinesis. Stomatal development in maize has proven to be a useful model for understanding the ACD mechanism. Previous studies have identified several proteins important for all three phases of ACD. Actin is important in each of the phases of ACD, suggesting an actin motor such as myosin may also be important for …

Physella Acuta, Comparative Immunology And Evolutionary Aspects Of Gastropod Immune Function, Jonathan H. Schultz

Biology ETDs

Gastropod immunobiology has benefitted from investigations focused on the planorbid snail Biomphalaria glabrata, intermediate host for the human parasite Schistosoma mansoni. Though such concentrated efforts have elucidated fascinating aspects of invertebrate immunity, they have not provided full knowledge regarding the evolution of immune function among other gastropod species. This dissertation presents the importance of making strategic choices regarding which organisms to select for comparative immunology. Herein, the choice was made to investigate the immunobiology of Physella acuta, a freshwater snail species of the Physidae, a sister family to Planorbidae to which B. glabrata belongs. Benefiting greatly from …

Comprehensive Sequencing With Surface Tagmentation Based Technology, Kuan Feng

Biomedical Sciences ETDs

Next-generation sequencing technologies (NGS) have undergone extensive improvements since the invention of the 454 sequencing system in 2005. With tremendous progress in throughput, speed and a dramatic reduction in per-base cost, DNA sequencing is widely used in basic science as well as translational research. However, it is still a challenge to acquire a complete human genome. The long-range information is often missing due to the short length of NGS reads, which leaves many gaps in between scaffolds rather than an entire piece for each chromosome. Moreover, without the long-range information, haplotype-resolved genome sequencing and structural variant detection can be difficult, …

Towards A Better Understanding Of The Effects Of Praziquantel On The Interaction Between The Helminth Parasite Schistosoma Mansoni And Its Murine Host, Melissa C. Sanchez

Biology ETDs

Schistosomiasis is a neglected tropical disease (NTD) that infects 206 million individuals worldwide. This disease is caused by dioecious trematodes of the genus Schistosoma, and its pathology is associated with the large number of eggs that are released by the female. Entrapped eggs lead to host immune and inflammatory responses resulting in disease progression. Chemotherapy provides the main means of control and praziquantel (PZQ) is the only widely available drug that is used in all mass drug administration (MDA) programs. As the number of individuals receiving PZQ continues to grow, the development of PZQ resistance is a concern and …

Multi-Resolution Analysis Of Large Molecular Structures And Interactions, Kasra Manavi

Computer Science ETDs

Simulation of large molecular structures and their interactions has become a major component of modern biomolecular research. Methods to simulate these type of molecules span a wide array of resolutions, from all atom molecular dynamics to model interaction energetics to systems of linear equations to evaluate population kinetics. In recent years, there has been an acceleration of molecular structural information production, primarily from x-ray crystallography and electron microscopy. This data has provided modelers the ability to produce better representations of these molecular structures. The purpose of this research is to take advantage of this information to develop multi-resolution models for …

Comparison Of Calculated Energy Expenditure To Measured Energy Expenditure In Overweight And Obese Burn Patients In An Icu Setting: A Retrospective Study, Elle Maree Skinner, Deborah A. Cohen, Orrin B. Myers, Diana Gonzales-Pacheco

Individual, Family, and Community Education ETDs

Burns cause massive dermal wounds. Wound healing elicits a significant catabolic response and increase in energy expenditure, and thus, calorie needs. Overfeeding and/or underfeeding the overweight and obese critically ill patient can increase complications. Indirect Calorimetry (IC) is considered the ‘gold standard” for the measurement of Energy Expenditure (EE). Predictive equations are calculated to estimate EE instead. This study is a retrospective chart review. The difference between predictive energy expenditure (via Curreri formula) and measured IC were analyzed via non-parametric Wilcoxon signed rank match paired tests. Curreri equation prediction was analyzed on the ability to match IC (0% over or …

Avian Thermoregulation In The Heat: Resting Metabolism, Evaporative Cooling And Limits To Activity In Sonoran Desert Birds, Eric Smith

Biology ETDs

Birds in subtropical deserts face significant thermoregulatory challenges as environmental temperatures regularly exceed avian body temperature. To understand the differing susceptibility of desert birds to increasing temperatures, this dissertation initially examined thermoregulatory performance in seven passerine bird species varying in body mass from 10 to 70g – Lesser Goldfinch, House Finch, Pyrrhuloxia, Cactus Wren, Northern Cardinal, Abert’s Towhee and Curve-billed Thrasher – and three larger Sonoran Desert nesting bird species – Mourning Dove (104 g), White-winged Dove (147 g) and Gambel’s Quail (161 g). Daytime resting metabolism, evaporative water loss and real-time body temperature were measured using flow-through respirometry at …

How Does Antibiotic Resistance Spread In Tuberculosis?, Julie A. Spencer

Shared Knowledge Conference

The ancient bacterial disease of tuberculosis (TB) is curable with antibiotics, but according to the World Health Organization, in 2016 over 10 million people became infected with the disease. 600,000 of these cases were resistant to antibiotics, yet the worldwide treatment success rate for drug resistant TB is only 54%. Furthermore, strains exist now that are resistant to all known antibiotics. In the current environment of global travel, this poses a risk for emergent epidemics of drug resistant TB. In this study, I asked: after an antibiotic resistant strain has evolved in someone’s lungs, how does it spread? It is …

Ponderosa Pine Seedling Physiology After Severe Wildfire: Does It Take A Forest To Make A Forest?, Lauren Bansbach

Shared Knowledge Conference

Ponderosa pine forests are an iconic ecosystem of western North America and provide numerous ecological, economic, and cultural benefits. Historically, these forests experienced regular surface fires that left most large, mature trees surviving. However, suppression of wildfires along with a warming climate have led to catastrophic tree-killing fires that result in vast areas (>200 mi2) dominated by shrubs and grasses. Because of limited survival of tree seedlings in these post-fire habitats, it remains unknown whether ponderosa pines can successfully recolonize severely burned landscapes. Without a mature tree canopy to provide periodic shade, seedlings experience hotter, drier conditions and likely …

The Paradoxical Giant Hummingbird: Comparison Of Andean And Coastal Subspecies With Respect To Blood, Migration, And Genes, Jessie L. Williamson

Shared Knowledge Conference

The Giant Hummingbird (Patagona gigas) is twice as large as the next largest hummingbird species and has long been considered paradoxical with respect to flight biomechanics. It is also an extreme outlier in other respects. For example, it is the only hummingbird species that breeds above 4,000 m elevation and also along the beaches of the Pacific Ocean. The high Andean populations of Giant Hummingbird (P. g. peruviana) that we have studied previously have a beta-hemoglobin genotype (serine at beta-hemoglobin A positions 13 and 83) that is characterized by high O2-affinity and is only shared with four unrelated hummingbird taxa …

Assessing Water Policy Implications Of The Changing Agriculture In New Mexico, Trevor A. Birt

Shared Knowledge Conference

Agriculture is the dominant water sector in New Mexico, responsible for more than 80% of water withdrawals in 2015 (USGS 2018). Water policy needs to be extremely adaptive and informed to meet the needs of not only farmers, but cities, industry and riparian uses. Since 1840, the U.S. Department of Agriculture (USDA) has conducted census surveys assessing all levels of agriculture. These data are physically published at the county, state, and national level on a 5-year cycle, detailing various material counts such as acreage, yields, and water usage, as well as socioeconomic estimates of farm costs, revenues, and hired workers. …

Rainfall Changes Alter Plant Communities In Chihuahuan Desert Grasslands, Timothy Ohlert

Shared Knowledge Conference

Variations in New Mexico’s climate have been detected over the past century and are expected to continue into the future. Some of these climatic changes result in more frequent instances of extreme drought events and alterations of monsoon seasonality, with monsoons being pushed later into the fall. Such changes could make our Chihuahuan Desert plant communities less productive, shift the abundance of the plant species, or have other destabilizing impacts. Our experiment manipulated precipitation in two desert grassland communities at the Sevilleta National Wildlife Refuge near Socorro, NM. Some plots were subjected to an extreme drought event, receiving only 33% …

Engage A Voice, Repress Fatigue; The Coincident Evolution Of Hominin Vocalization And A Metabolic Threshold, Galen A. Morton 9935238, Martin L. Morton

Shared Knowledge Conference

Physiologically self-protective mechanisms borne from hominin evolutionary history that increase survivability are not unknown to science. In reviewing exercise science literature regarding testing and assessment measures of subjects talking while exercising, a logical question has materialized: To what degree has evolution facilitated synchronization of comfortable oral communication with sustainable exercise intensity? An individual able to engage a voice, represses fatigue. The Talk Test, is a practical strategy whereby a subject deliberately speaks during an exercise protocol. It is a common tool in both kinesiology and clinical fields because it inherently identifies a pivotal metabolic threshold. The coincidence of comfortable ability …

Combined High-Speed Single Particle Tracking Of Membrane Proteins And Super-Resolution Of Membrane-Associated Structures, Hanieh Mazloom Farsibaf, Keith A. Lidke

Shared Knowledge Conference

Many experiments have shown that the diffusive motion of lipids and membrane proteins are slower on the cell surface than those in artificial lipid bilayers or blebs. One hypothesis that may partially explain this mystery is the effect of the cytoskeleton structures on the protein dynamics. A model proposed by Kusumi [1] is the Fence-Picket Model which describes the cell membrane as a set of compartment regions, each ~ 10 to 200 nm in size, created by direct or indirect interaction of lipids and proteins with actin filaments just below the membrane. To test this hypothesis, we have assembled a …

Temporal Information Guides Prefrontal Preparatory Activity, Jacqueline R. Janowich

Shared Knowledge Conference

Proactive preparation for an upcoming goal differs from last-minute reactive adaptation, but it is unclear how preparatory mechanisms change based on when in the future a goal needs to be executed. To assess how timing information is integrated into preparatory control, we designed a novel variant of the Dot Pattern Expectancy task, where each cue signaled both task rule and delay duration (known short, known long, or unknown) between cue and probe. We recorded EEG while healthy young adult participants (n=36) performed this task, and found that delay demands elicited distinct prefrontal preparatory activities. Medial prefrontal amplitude was sensitive to …

Mechanisms For The Spread Of Antibiotic Resistance In Tuberculosis, Julie Allison Spencer

Shared Knowledge Conference

Tuberculosis (TB) is currently the ninth leading cause of death for humans worldwide, causing 10.4 million new infections in 2016. According to the World Health Organization, of these infections, 600,000 were antibiotic resistant. However, the treatment success rate for resistant TB was only 54%. The potential for emergent epidemics of drug resistant TB highlights the need to understand the mechanisms for the spread of resistance. Mycobacterium tuberculosis, the bacterium that causes TB, evolves resistant strains within individuals who are being treated with antibiotics. It has been assumed previously that the resistant characteristics of these strains are spread primarily by the …

The Critical Need For Mental Health Education To Be Mandated In New Mexico's Public Schools, Bonnie L. Murphy

Shared Knowledge Conference

Based on a review of research and best practices in mental health awareness and skills, this inquiry project argues for state legislative policies that would require mental health awareness and skills in the K-12 curriculum. Mental health affects individual accomplishments in every stage of people’s lives beginning in early childhood and throughout the life cycle. Prevention and treatment of mental illness plays a key role in the ability of an individual to cope with loss and develop resiliency and perseverance in challenging times and to make better decisions that improve the individual’s life and the lives of those around them. …

Intraspecific Floral Color Variation As Perceived By Pollinators And Non-Pollinators: Evidence For Pollinator-Imposed Constraints?, Kellen Cedar Paine

Biology ETDs

Pollinator-mediated selection is expected to constrain floral color variation within plant populations, yet populations with high color variability are common in nature. To explore this, we collected floral reflectance spectra for 34 populations of 14 plant species of New Mexico, USA, and translated them into three different visual spaces. We found evidence that the majority comparisons were indistinguishable to bees, the dominant pollinator group. We also found that floral color variation was significantly greater for two non-pollinating groups, birds and humans. Our results suggest that a portion of human-perceived floral color variation within populations persists because it is invisible to …

2017 Annual Report, Christopher C. Witt

Annual Reports

No abstract provided.

Opportunities To Enhance Environmental Flows On The Rio Chama, Anjali Bean

Water Resources Professional Project Reports

The construction of El Vado dam on the Rio Chama in 1935 dramatically changed the natural flow of the river, reducing spring runoff and summer scouring floods in favor of providing a constant water supply to downstream users. The San Juan-Chama Project, a trans-basin water diversion built as part of the Colorado River Compact, also significantly increased water flow in the river, a unique situation in the state of New Mexico. This increase in management of the river for human benefit has permanently altered the natural hydrograph of the river and the ecology and geomorphology of the system that depends …

Surface-Water Groundwater Interactions In The Middle Rio Grande, Nm Implications For Bank Storage And Native Species, Tom Heller

Water Resources Professional Project Reports

Riparian zones are important for ecological purposes and ecosystem processes, and are valued for aesthetic, recreational, cultural, and historical reasons. The declining integrity of cottonwood-dominated riparian systems in the Middle Rio Grande (MRG) of central New Mexico has been evident for several decades, of which the largest cause has been the severe alterations riparian hydrology. While cottonwood germination responses to changing flood regimes have been well studied, the response to changing groundwater dynamics - and the suitability of groundwater regimes in the MRG - is less well understood. This study used pressure transducer groundwater datasets installed in the Rio Grande …

Hemocyanin-Like 1 Protein, Unique To Planorbid Snails, Supports Reproductive Output Of Biomphalaria Glabrata, Vector Of Schistosomiasis, Janeth Pena

Biology ETDs

The Neotropical freshwater snail, Biomphalaria glabrata is a major intermediate host of the parasite Schistosoma mansoni, causative agent of human intestinal schistosomiasis. Disease control efforts consist mainly of mass drug treatment but it is recognized that targeting of the snail vector is essential to prevent parasite transmission that leads to rapid (re)infections. This dissertation combines the knowledge of basic snail biology with modern molecular techniques including protein analysis, next-generation sequencing, proteomics, qRT-PCR and RNA interference to: (1) characterize hemocyanin-like genes in B. glabrata, in particular with further description of the egg mass fluid (EMF) protein hemocyanin-like 1 (Hcl-1), (2) …

From Olfaction To Immunity: Characterization Of Nasal Immunity In Bony Fish, Ali Sepahi

Biology ETDs

The olfactory system is a common route pathogen entry in vertebrates. As a consequence, the nasopharynx-associated lymphoid tissue (NALT) needs to rapidly clear infections without compromising the sense of olfaction. NALT is present in teleost fish but its cellular and molecular mechanisms of action have not been investigated to this date. This dissertation focuses on three aims: 1. investigating the role of CCL19-like as a primordial chemokine in vertebrate nasal immunity, 2. determining the presence of tissue microenvironments within the olfactory organ (OO) of rainbow trout, and 3. understanding the immune contributions of olfactory sensory neurons (OSNs) in teleosts against …

The Fate Of Xylem-Transported Co2 In Plants, Samantha S. Stutz, David T. Hanson

Biology ETDs

The concentration of carbon dioxide in tree stems can be ~30-750 times higher than current atmospheric [CO₂]. Dissolved inorganic carbon enters the xylem from root and stem respiration and travels with water through the plant. However, the fate of much of this xylem-transported CO₂ is unknown. In these studies I examined the fate of xylem-transported CO₂ traveling through the petiole and leaf. This was accomplished by placing cut leaves from a woody and herbaceous C₃ species, and a Kranz-type C₄ species, in a solution of dissolved NaH¹³CO₃ at concentrations similar to …

Genomic Signatures Of Adaptive Evolution, Jessica Weber

Biology ETDs

Comparative genomics has revolutionized virtually all fields of biology including the study of evolution. In this dissertation, I used next-generation sequencing to explore the evolutionary histories and adaptive evolution of a diverse set of taxa. Comparisons ranged across time scales, from population-level genetic diversity studies to questions spanning the deepest branches of the metazoan lineage. Whole genome sequencing of 50 unrelated Korean individuals revealed that Koreans have a distinct genetic history from the Chinese and Japanese populations. Our Korean-specific variome database was used to identify novel disease-causing variants in the Korean population, highlighting the value of high-quality ethnic variation databases …

Investigations On The Role Of The Immune System In Mammary Development And Maternal Immunity In The Marsupial, Monodelphis Domestica, Bethaney Fehrenkamp

Biology ETDs

All newborn mammals are highly dependent upon milk for nourishment and immune protection. This is especially true for marsupials, a lineage of mammals with a short gestation, limited placental development, and an increased reliance on an extended lactation period. Most newborn marsupials do not receive passive maternal immunity in utero and therefore are entirely dependent upon factors within the milk for immune protection until capable of mounting their own response. In this project we seek to characterize the complex lactation program utilized by marsupials, and seek greater understanding of the maternal role in the establishment of the developing immune system …

Autophagy Is Stimulated By Acute High Intensity Interval Exercise In Human Skeletal Muscle And Electrical Pulse Stimulation In C2c12 Myotubes In Vitro, Kurt A. Escobar

Health, Exercise, and Sports Sciences ETDs

Purpose: 1) To compare the effects of an acute bout of HIIT exercise (treadmill running) on autophagy to MICT exercise in human skeletal muscle 3 hours post exercise, and 2) to test an in vitro model of muscle contraction-induced autophagy using electrical pulse stimulation in C2C12 myotubes. Methods: Study 1: Ten recreationally active males and females completed a bout of high intensity interval training (HIIT) exercise and moderate intensity continuous exercise (MICT) exercise in a fasted state. Muscle biopsies from the vastus lateralis were taken pre and 3 hours post-exercise. Muscle tissue was analyzed for protein expression of markers of …

Soil Properties Explain Changes In Soil Microbial Enzyme Activity With Depth In A Piñon-Juniper Woodland, Amanda B. Sacks

Biology ETDs

Semi-arid ecosystems play a major role in the global carbon cycle. These ecosystems, including piñon-juniper (PJ) woodlands, are experiencing extreme drought. As such, it is vital to characterize both above and below-ground processes in these systems in order to understand their vulnerability to future drought and other changes in climate.

Soils microbial communities play a critical role in nutrient cycles, as well as carbon storage, within PJ woodlands. More specifically, microbes aid the decomposition and mineralization of key nutrients, including carbon, nitrogen and phosphorus, through the use of extracellular enzymes. Measuring microbial enzyme activity, therefore, can provide insight into how …