Life Sciences Commons^™

Genetic Diversity Of Kemp's Ridley (Lepidochelys Kempii) Sea Turtles On South Padre Island, Texas, Hilary R. Frandsen

Theses and Dissertations

In 2010, researchers observed an abrupt decline in nesting numbers of the Kemp’s ridley following 35 years of positive growth. In wake of this halt, and subsequent lowered nesting averages, evaluation of the genetic diversity of remaining individuals is relevant to investigate the plausibility of a genetic bottleneck, and determine the reproductive stability of the Kemp’s ridley.

Here, I evaluate the genetic diversity within a sampling of the Kemp’s ridleys on South Padre Island using two methods: targeting the mitochondrial control region and targeting the complete mitochondrial genome. Opportunistic samples were donated from juvenile ridleys on the East coast, and …

Phylogeography Of An Estuarian Calanoid Copepod; Acartia Tonsa In The Texas Gulf Of Mexico, Nicole J. Figueroa

Theses and Dissertations

The calanoid copepod, Acartia tonsa is one of the most abundant and well-studied estuarian species. However, the idea that this cosmopolitan species has unrestricted dispersal and high gene flow has been challenged. In this study, a more holistic picture of the phylogeography of A. tonsa was developed using the mitochondrial gene cytochrome oxidase one (mtCOI). Multiple new lineages were found in the Texas Gulf of Mexico that are basal to Northeastern Atlantic lineages. Connectivity was also observed between Brazil and the Texas Gulf of Mexico. The revised phylogeny shows a clear pattern of cryptic speciation as the species made a …

Foxo3 Regulation Of Stem Cell Markers Oct4 And Sox2 In Pten-Null Glioblastomas, Eduardo Martinez

Theses and Dissertations

The PI3K pathway controls many cellular processes such as cell growth, survival, metabolism, apoptosis, and differentiation. Canonically, PI3K activates AKT leading to subsequent nuclear exportation of FOXO transcription factors. Dysregulation of the PI3K pathway is a hallmark in many cancers and often is attributable to a null mutation in PTEN. PTEN is a phosphatase that reverses the reactions catalyzed by PI3K. Loss of PTEN leads to constitutive inactivation of tumor suppressor FOXO proteins. However, there is increasing evidence that FOXO may still reside and promote transcriptional activity in the nucleus despite high PI3K output within certain advance cancers and …

Utilizing Accelerometer Telemetry Tags To Compare Red Snapper (Lutjanus Campechanus) Behavior On Artificial And Natural Reefs, Ethan T. Getz

Theses and Dissertations

The Texas Parks and Wildlife Department Artificial Reef Program has deployed over 2,800 hectares of reefing area composed of petroleum platforms, steel vessels, and concrete. Artificial reefs have been shown to support many important reef fishes such as red snapper (Lutjanus campechanus), however, few studies have compared fish behavior on artificial reefs and natural habitats. We examined activity levels, behavioral patterns and habitat preferences of red snapper over natural reefs, oil platforms and submerged ships. Telemetry tags (Sonotronics model MTT) with tri-axial acceleration range, average depth, and average temperature were programmed to optimize data collection and tag life. …

Understanding Community And Ecophysiology Of Plant Species On The Colorado Plateau, Hannah Elizabeth Yokum

Theses and Dissertations

The intensification of aridity due to anthropogenic climate change is likely to have a large impact on the growth and survival of plant species in the southwestern U.S. where species are already vulnerable to high temperatures and limited precipitation. Global climate change impacts plants through a rising temperature effect, CO2 effect, and land management. In order to forecast the impacts of global climate change, it is necessary to know the current conditions and create a baseline for future comparisons and to understand the factors and players that will affect what happens in the future. The objective of Chapter 1 is …

Understanding Community And Ecophysiology Of Plant Species On The Colorado Plateau, Hannah Elizabeth Yokum

Theses and Dissertations

The intensification of aridity due to anthropogenic climate change is likely to have a large impact on the growth and survival of plant species in the southwestern U.S. where species are already vulnerable to high temperatures and limited precipitation. Global climate change impacts plants through a rising temperature effect, CO2 effect, and land management. In order to forecast the impacts of global climate change, it is necessary to know the current conditions and create a baseline for future comparisons and to understand the factors and players that will affect what happens in the future. The objective of Chapter 1 is …

Predatory Capacity Of King Crabs In Antarctica, Brittan V. Steffel

Theses and Dissertations

For millions of years, cold water temperatures have excluded shell-crushing (durophagous) predators from continental-shelf environments off the western Antarctic Peninsula. Recently, however, king crabs, Paralomis birsteini, have been found in dense, reproductively viable populations on the upper continental slope, and rapid warming might enable them to expand to the shelf. King crabs are crushing shelled invertebrates on the slope, but calcification of sturdy, shell-crushing chelae is likely inhibited by the low saturation state of high-Mg calcite in the deep Southern Ocean. The objectives of this study were to better understand the predatory capacity of P. birsteini by estimating the potential …

Age And Growth Of Bonefish, Albula Species Among Cuban Habitats, Jacob Joseph Rennert

Theses and Dissertations

Bonefish (Albula spp.) are a prized sportfish among avid anglers worldwide. Two morphologically indistinguishable species of bonefish (Albula vulpes and Albula goreensis) exist in the circumtropical waters of the western Atlantic. A. vulpes grows faster and reaches larger sizes in the Florida Keys than in the Bahamas and other insular regions, but the mechanisms driving this variation have not been identified. Cuba supports large populations of bonefish, but their age, growth rate, and reproductive biology has not previously been examined. I obtained specimens from fish markets and local research staff in 3 regions around the periphery of Cuba from November …

Modeling The Niche Space Of Coral Assemblages Along The Florida Reef Tract, Kelly Renee Mccaffrey

Theses and Dissertations

Quantifying the niche space of organisms is critical for conservation and restoration purposes. Yet, with warming oceans, we cannot assume that the localities that were optimal for species in the past remain so today or will be optimal for that species in the future. Over the next century, the climate is predicted to drive sea-surface temperatures to even higher levels, consequently increasing the risk of mass coral bleaching and disease outbreaks, and potentially reducing the niche space available to corals. Yet, there is considerable temporal and spatial variation in coral bleaching, disease prevalence, and mortality. Using data collected from 2398 …

Chlamydomonas Reinhardtii, A Model For Quorum Sensing At The Interkingdom Interface, Timothy Charles Haire

Theses and Dissertations

Microbial communities significantly impact the processes of the eukaryotic hosts they colonize. In many cases, symbiotic organisms both pathogenic and mutualistic coordinate their efforts through a process called quorum sensing (QS). QS is driven by low-molecular weight signals that regulate gene expression at threshold inducer concentrations, allowing phenotypic switching to be driven by cell density. These quorum sensing signals are subject to eukaryotic perception, and quorum associated phenotypes can directly influence the growth and development of eukaryotes. Eukaryotic perception of quorum sensing signals has been chiefly studied in plants, and to a lesser extent mammalian systems, yet no delineated model …

Oxidative Insults Disrupt Mitochondrial Dynamics, Iraselia A. Garcia

Theses and Dissertations

Mitochondria form an organellar network to provide ATP to the cell. Mitochondrial DNA (mtDNA) combines with nuclear DNA to encode polypeptides critical to forming the complexes of oxidative phosphorylation in the mitochondrial inner membrane, which generate a transmembrane potential (ΔΨm) to synthesize ATP. This ΔΨm is required to maintain mitochondria fission/fusion dynamics: organellar fusion (mediated by OPA1) and fission events (mediated by DRP1) coordinately regulate mitochondrial dynamics. While oxidative stress correlates with mitochondrial dysfunction, it is unclear how oxidants affect mitochondrial structure/function homeostasis. This project seeks to establish and examine the impact of reactive oxygen species (ROS) on mitochondrial dynamics. …

Central Precocious Puberty Alters The Mammary Gland Epithelial Landscape In Female Rats, Alina M. Hamilton

Theses and Dissertations

Precocious puberty (PP) is a serious endocrine disorder associated with an increased risk for development of breast cancer (BC) later in life. However, the lack of a strong in vivo model has made it difficult to study this relationship. Our group has established manganese (Mn) as a non-toxic activator of the pubertal process. Recently we demonstrated that Mn-induced precocious puberty (MnPP) accelerates E2-regulated mammary gland (MG) development in prepubertal female rats, resulting in persistent proliferation and adult hyperplasia. Using this model, I demonstrate that precocious puberty alters steroidal regulation of proliferation in both the prepubertal and adult virgin MG, altering …

Effectiveness Of The Flipped Classroom Model In Anatomy And Physiology Laboratory Courses At A Hispanic Serving Institution, Gerardo Sanchez

Theses and Dissertations

A flipped laboratory model involves significant preparation by the students on lab material prior to entry to the laboratory. This allows laboratory time to be focused on active learning through experiments. The aim of this study was to observe changes in student performance through the transition from a traditional laboratory format, to a flipped format. The data showed that for both Anatomy and Physiology (I and II) laboratories a more normal distribution of grades was observed once labs were flipped and lecture grade averages increased. Chi square and analysis of variance tests showed grade changes to a statistically significant degree, …

Role Of Terrestrial Organic Matter In Food Webs Of The Rocky Intertidal Zone, Douglas O. Fairbanks

Theses and Dissertations

Terrestrial organic matter (TOM) constitutes an important source of energy in many aquatic environments (streams, lakes, wetlands). This is the first study to examine the role of TOM in food webs of the rocky intertidal zone. We compared the consumption of red alder leaves (Alnus rubra) to common marine sources of drifting detritus along the southern Oregon coast (Nereocystis luetkeana, Phyllospadix spp., and Fucus gardneri). We used short term (hours to days) and long term (months) feeding experiments to compare the rate of consumption among each plant species during the Spring and Fall of 2014 …

Response To Drought Of A Stream Fish Assemblage In A High Elevation Stream In The Intermountain West, Richard M. Simkins

Theses and Dissertations

One of the most influential disturbances for stream fish assemblages is large-scale declines in flow caused by periods of drought. Although stream characteristics are known to influence the response of stream fishes to drought, we asked if ecological traits of stream fishes determine, in part, their population level response to drought. To test for ecological trait-based responses to drought in a stream fish assemblage, we quantified species abundances over a period of 5 years that represented a wet to dry period. We sampled stream fishes in Yellow Creek, Wyoming, USA, a high elevation stream dependent on snow-storage for most of …

Bacterial Community Ecology Of The Colon In Mus Musculus, Rachel Marie Nettles

Theses and Dissertations

The gut microbiome is a community of closely interacting microbes living in the gastrointestinal tract. Its structure has direct relevance to health. Disturbances to the microbiome, such as due to antibiotic use, have been implicated in various diseases. The goal of this study was to determine how the gut microbiome reacts to and recovers from disturbance caused by antibiotics. Because diet also influences the microbiome, this study included the interaction between diet and antibiotics. Half of the mice in each diet treatment were given antibiotics to disturb their microbiomes. After cessation of antibiotics, mice were paired in combinations within diets …

The Roles Of Diffusion And Bulk Flow In Neural Function And Alzheimer's Disease, Wade N. Dauberman

Theses and Dissertations

Alzheimer’s disease (AD) is a neurodegenerative disorder affecting close to 5.1 million Americans and its incidence is expected to rise with the higher number of people in the aging population. A hallmark of the disease is the production of the amyloid-beta (Aß) peptides and eventual self-assembly of these peptides into fibrils and extracellular Aß plaques. Both plaques and oligomers are proposed to be the direct cause of AD, but it remains unclear how these structures affect neuronal function and pathogenesis. While a direct toxic effect is currently the favored hypothesis, biomolecule aggregation is also known to play a role in …

Exploring The Biogeography Of South American Rainforest Understory Birds Using Morphological Variation In The Wedge-Billed Woodcreeper ( Glyphorynchus Spirurus ), Gregory Tito

Theses and Dissertations

Tropical rainforests in the Amazon Basin show an extraordinarily high degree of biodiversity, the reasons for which are poorly understood. A number of biogeographical models have been proposed to account for the variation present within and among species, including birds. This study tests the predictive ability of six major historical vicariant biogeographical models (Andean uplift, marine incursion, Amazonian lake, river barrier, refuge, and river refuge) using a large data set of morphological characters in the Wedge-billed Woodcreeper (Glyphorynchus spirurus), a small understory songbird found mostly in terra firme tropical rain forest. It also characterizes variation in key morphological characters and …

Integrative Analysis To Evaluate Similarity Between Brcaness Tumors And Brca Tumors, Weston Reed Bodily

Theses and Dissertations

The term "BRCAness" is used to describe breast-cancer patients who lack a germline mutation in BRCA1 or BRCA2, yet who are believed to express characteristics similar to patients who do have a germline mutation in BRCA1 or BRCA2. Although it is hypothesized that BRCAness is related to deficiency in the homologous recombination repair (HRR) pathways, relatively little is understood about what drives BRCAness or what criteria should be used to assign patients to this category. We hypothesized that patients whose tumor carries a genomic or epigenomic aberration in BRCA1 or BRCA2 should be classified under the BRCAness category and that …

Integrative Analysis To Evaluate Similarity Between Brcaness Tumors And Brca Tumors, Weston Reed Bodily

Theses and Dissertations

The term "BRCAness" is used to describe breast-cancer patients who lack a germline mutation in BRCA1 or BRCA2, yet who are believed to express characteristics similar to patients who do have a germline mutation in BRCA1 or BRCA2. Although it is hypothesized that BRCAness is related to deficiency in the homologous recombination repair (HRR) pathways, relatively little is understood about what drives BRCAness or what criteria should be used to assign patients to this category. We hypothesized that patients whose tumor carries a genomic or epigenomic aberration in BRCA1 or BRCA2 should be classified under the BRCAness category and that …

Seasonally Managed Connectivity Of An East Florida Mosquito Impoundment To Increase Emigration Of Juvenile Snook And Tarpon From The Nursery Habitat, Anthony Carl Cianciotto

Theses and Dissertations

Mangrove marshes are nursery habitats for juveniles of many fishes, including snook (Centropomus undecimalis) and tarpon (Megalops atlanticus), which are important recreational fisheries species in Florida. Thousands of acres of mangrove marshland in the Indian River Lagoon (IRL) have been impounded for mosquito control. Most of these impoundments are under Rotational Impoundment Management (RIM), in which culverts connecting to the IRL are closed in the summer to control mosquito reproduction, and opened Oct-May to allow water exchange. We conducted a quantitative assessment of the emigration of juvenile snook and tarpon from the Bee Gum Point Nature Preserve impoundment in Vero …

Identification Of Novel Nuclear Proteins Required For Meiotic Silencing By Unpaired Dna In Neurospora Crassa, Dilini Ralalage

Theses and Dissertations

A fundamental step that occurs during sexual reproduction is meiosis, which is a specialized type of cell division. During meiosis, pairs of chromosomes exchange genetic information via recombination. At this point, the genome is particularly susceptible to viruses and other foreign genetic invasions. Therefore, it is important to protect the genome to prevent the transmission of foreign genetic materials to the offspring. There are several mechanisms work together to protect host genome from foreign genetic materials. These are known as “genome defense mechanisms”.

The fungus Neurospora crassa is one of the best organisms for genome defense studies due to the …

Altered Na, K- Atpase Isoform Expression In Artemia Franciscana In Response To Hypersaline Environments, Jessica Drenth

Theses and Dissertations

The Na,K-ATPase (NKA) is an essential membrane pump that helps to establish cell ion gradients, and regulate intracellular salt in many organisms. One such species, Artemia franciscana (brine shrimp), extreme halophiles which live in hypersaline environments, expresses 2 distinct α-catalytic subunits of the NKA. One of these subunits, α2-(KK), has two key lysine substitutions located within the cation binding sites. Prior work has demonstrated this specific subunit may be directly involved in brine shrimp adaptation to their extreme environments. However, the precise molecular and physiological effects of α2-(KK) have not been entirely elucidated. I determined through immunohistochemistry that my initial …

Decomposition Of Black Mangrove (Avicennia Germinans ) Leaf Litter: Calibrating Estuarine Indicators Of Functional Recovery, Leticia Martinez Contreras

Theses and Dissertations

Decomposition of plant material produced by mangroves and other macrophytes in estuaries occurs in both sediments and the water column. Early and intense processing could be more common in the water. In a previous study, in situ decomposition rates of Black Mangrove (Avicennia germinans ) leaf litter suspended in the water column differed among three estuaries in south Texas with moderate differences in salinity, water temperature, available nitrogen (N), and tidal flow. A series of microcosm experiments were conducted to determine the influence, within observed ranges in the estuaries, of these water variables on mass loss of Black Mangrove …

The Vocal Babbling Behavior And Its Sibling Effects In A Wild Parrot, Tatiana Dolgushina

Theses and Dissertations

Vocal learning is a rare trait in the animal kingdom, defined as the sensorimotor imitation of sounds, and is only found in select groups of birds and mammals. Parrots are a behaviorally complex group of birds, famous for their ability to mimic social companions, but how they develop this ability in the wild has received little attention. The vocal learning period consists of a complex vocal babbling stage, a crucial developmental precursor for imitation of adult vocalizations in humans and songbirds, but has not been described in any of the 360+ parrot species. This project quantifies potential individual variation in …

Development Of Mechanosensory Innervation In The Frog, Xenopus Laevis, Peter Andrew Feuk

Theses and Dissertations

ABSTRACT

DEVELOPMENT OF MECHANOSENSORY INNERVATION IN THE FROG, XENOPUS LAEVIS

by

Peter Feuk

The University of Wisconsin-Milwaukee, 2017

Under the Supervision of Dr. R. David Heathcote

This study aims to investigate whether a specific target cell in the epidermis of the African clawed frog, Xenopus laevis, guides the initial outgrowth and pattern of Rohon-Beard (RB) cells and their survival. RB cells are primary mechanosensory neurons present during the early developmental stages of X. laevis. These neurons provide sensory input to the frog throughout embryonic and larval development before initiating apoptosis around the start of metamorphosis. The innervation of embryonic skin …

Applications Of Side Scan And Parametric Echosounders For Mapping Shallow Seagrass Habitats And Their Associated Organic Carbon, Austin L. Greene

Theses and Dissertations

Despite a global valuation of $1.9 trillion seagrass habitats world-wide are in decline—directly impacting the large soil carbon stocks associated with seagrasses. Many methods exist to measure the health of seagrass habitats, yet few apply to shallow coastal ecosystems. Those that do lack spatial resolution (satellite surveys) or do not provide continuous data across large areas (point-based surveys). Furthermore, carbon content of these ecosystems is largely limited to destructive and time-consuming soil core sampling. Side scan and parametric acoustics represent a unique technological opportunity to study habitat coverage and carbon content of vegetated coastal habitats (< 3 m depth). This study presents proof of concept for applications of recreational side scan and parametric sub-bottom profiling sonars in mapping both habitat coverage and organic carbon distribution in shallow seagrass habitats, and explores how these methods might be improved in future applications.

Increasing Marine Debris Awareness Through Public Education And Analyzing Fish For Microplastic And Pollutant Contamination, Stephanie R. Dubois

Theses and Dissertations

Marine debris is any persistent solid material that is manmade and then disposed of into the world’s oceans. Outreach and education was used in combination with biological research using an indicator fish species to raise awareness about the impacts of marine debris and encourage change in behavior to reduce marine debris. Pre and post surveys were administered during marine debris education tours for K-12 students at the Coastal Studies Lab on South Padre Island, Texas to determine change in knowledge and behavior regarding marine debris. Pinfish were collected from Laguna Madre and stomachs and livers removed for microplastics content and …

Multifunctionality Of Cover Crops On Organic Vegetable Farms In South Texas, Savannah M. Rugg

Theses and Dissertations

Situated in deep South Texas, the Lower Rio Grande Valley (LRGV) is considered one the most productive agricultural regions in the southern US. With the highest concentration of organic farms in the state (Hidalgo county), finding management practices that comply with organic certification is increasingly pertinent. Cover cropping can serve multiple functions in an agroecosystem such as: suppressing weeds, increasing soil organic matter (SOM), increasing soil nitrates, and enhancing soil biodiversity. The four cover crops (lablab, sunn hemp, sudangrass, and pearl millet) were assessed to see their potential to increase soil nitrogen, to increase soil organic matter, and to suppress …

Genetic Variation In Two Economically Important Arthropod Vectors Of Citrus Diseases, Alejandra Fuentes

Theses and Dissertations

Arthropod vectors are agriculturally and ecologically important because they transmit numerous plant pathogens. Commonly, control strategies for vector-borne plant pathogens focus on suppression of vector populations. Genetic variation studies in pest populations provide useful information for biological control, understanding pesticide resistance, and inferring global movement patterns. In chapter I, genetic variation of worldwide populations of Diaphorina citri, the vector of Citrus greening disease, was examined to assess potential sites of origin of invasive populations. The results showed population structure at regional levels, suggesting limited gene flow and revealing patterns of invasion. In chapter II, I explored the community of …