Life Sciences Commons^™

Characterization Of Calcium Homeostasis Parameters In Trpv3 And Cav3.2 Double Null Mice, Aujan Mehregan

Masters Theses

In mammals, calcium influx is required for oocyte maturation and egg activation, as it supports the persistent calcium oscillations induced by fertilization. These oscillations are required for the initiation of embryo development. The molecular identities of the plasma membrane calcium-permeant channels that underlie calcium influx are not established. Among these channels, Transient Receptor Potential Vanilloid, member 3 (TRPV3) allows divalent cations, namely strontium (Sr²⁺) and calcium (Ca²⁺) with high permeability, into cells, and its expression pattern seems to predict an essential role in the initiation of development. Another channel that was identified to be expressed in …

Surveying The Circular Rep Encoding Single Stranded (Cress) Dna Viral Consortium Found In Invasive Quagga Mussels (Dreissena Rostriformis Bugensis) And Sediments Of The Central Lake Michigan Benthos, Nicholas Gezon

Masters Theses

Globalization and resulting increases in international trade has allowed for the movement of species between almost all ecosystems on Earth. The Great Lakes in particular has seen a number of high impact invasive species that have moved in following the opening of the lakes to intercontinental shipping trade. This research specifically focuses on the benthic community of Lake Michigan which has seen significant community shifts including declines of the amphipods Diporeia spp. and the expansion of invasive quagga mussels (Dreissena rostriformis bugensis). Little is known about the viral community in the benthos of Lake Michigan and how …

Brook Trout Behavioral Thermoregulation And Habitat Selection In A Small Michigan Coldwater Stream: Implications For Successful Management, Justin Emory Wegner

Masters Theses

Global warming and conversion of forests for urbanization, agriculture and mineral extraction are increasing water temperatures throughout Brook Trout’s range causing population declines; particularly in populations persisting in marginal habitats and in the southern limits of their distribution. The Brook Trout is an ectotherm that can cope with elevated water temperature by moving to coldwater refuge such as groundwater seeps, coldwater tributary confluences, and headwaters. Availability of coldwater refuge is vital for the survival of Brook Trout populations threatened by increasing water temperatures. I used radio telemetry to study the movement, habitat use, and behavioral thermoregulation of Brook Trout living …

Phosphorus Retention In West Michigan Two-Stage Agricultural Ditches, Emily Kindervater

Masters Theses

Input of excess nutrients into a water body can negatively impact ecological structure and function, as well as the economic vitality of surrounding communities, by contributing to eutrophication. For example, phosphorus (P) and sediment inputs from agricultural drainage have facilitated the development of hypereutrophic conditions in Lake Macatawa, a drowned river mouth lake located in Holland, Michigan. Two-stage ditches, an agricultural best management practice (BMP), are used in some areas of the Midwest to reduce N export downstream via denitrification. This BMP simulates a mini-floodplain by replacing a traditional, trapezoidal ditch with a channel that has excavated benches on each …

Stressing Out: Dynamics Of Chromatin Insulator Body Formation In Eukaryotes Under Osmotic Stress, Shannon Marie Garland

Masters Theses

Higher order genome organization and the role it plays in governing cell dynamics and protein expression has become a widely studied field. Chromatin insulators are important to this organization in their ability to form long range contacts between distant regions on the genome. During times of osmotic stress, insulator proteins leave their binding sites on the DNA to form insulator bodies in the nucleus. This phenomenon relieves the DNA of its structure and is rapidly reversible. Using a variety of immunofluorescent staining methods, this work looked to further characterize this process while attempting to identify molecular mechanisms that mediate chromatin …

Aspects Of The Physiological And Behavioral Defense Adaptations Of The Mountain Madtom (Noturus Eleutherus), Meredith Leigh Hayes

Masters Theses

Madtoms (Noturus spp.) are a highly endemic clade of miniature catfishes that faces widespread imperilment. Little is known about the ecology of these secretive fishes, and understanding the behavioral and physiological adaptations madtoms have evolved to resist pathogens and competitors is necessary for conservation.

Madtoms nest under cover and provide extensive paternal care. Attempts to rear eggs in captivity result in high mortality rates from infection, leading to questions about how wild nests resist disease. In many fishes, males produce antimicrobial substances that confer protection to eggs. To determine if guardian males deter disease in nests, Mountain Madtoms ( …

Uncovering Tasselsheath3. A Genomic And Phenotypic Analysis Of A Maize Floral Mutant., Thompson Zhang

Masters Theses

In the modern era, maize has become the most successful crop grown in the United States. According to the USDA over 90 million acres of land are planted to corn and 96.2% of the U.S feed grain production is made up of the cereal. Part of the success of maize is due to its floral architecture, and its pollination technique in which the flower opens, exposing stamens containing pollen into the air. A unique organ called the lodicule functions as a release mechanism, forcing the flower to open. Lodicules from grasses and eudicot petals are homologous, yet there is little …

Yellow Perch Genetic Stock Structure In Eastern Lake Michigan: What Is The Importance Of Drowned River Mouth Lakes?, Gregory M. Chorak

Masters Theses

Habitat heterogeneity has the possibility of structuring populations. Even in connected landscapes, there can be cryptic structuring of populations that coincides with landscape features that limit gene flow or select for different phenotypes within a species. Yellow perch (Perca flavescens) is an economically and ecologically prominent fish in the Laurentian Great Lakes. In the Lake Michigan basin, yellow perch reside in nearshore Lake Michigan, including drowned river mouths (DRMs, lake-like habitats that link tributaries to Lake Michigan). The goal of this study was to understand whether yellow perch populations are structured in eastern Lake Michigan by the connected …

Seasonal Ecology Of Mottled Sculpin And Brown Trout In A Coldwater Michigan Stream, Susanna K. Lagory

Masters Theses

In temperate regions, environmental conditions vary distinctly between seasons. This variation can strongly impact in-stream environmental conditions. Winter is often thought to be harsher than other seasons for stream fishes, given the adverse environmental conditions that arise from low temperatures during winter in temperate regions. Low temperatures, episodic elevated discharge, and ice formation associated with winter are hypothesized to reduce movement, body condition, and survival of stream fishes. However, few studies test this hypothesis through formal comparisons, and most studies of seasonal stream fish ecology focus on salmonids. To address this knowledge gap, I estimated and compared body condition, net …

Polychlorinated Biphenyl Concentrations In Fish From Lake Michigan Tributaries And A Preliminary Risk Assessment Concerning Their Consumption By Sport And Tribal Fishermen, Amanda K. Potter

Masters Theses

Human and environmental health continues to be threatened by persistent organic pollutants in the Great Lakes ecosystem. Polycholorinated biphenyls (PCBs) are considered one of the most toxic contaminants in the Great Lakes due to their recalcitrance, bioaccumulation, lipid solubility, and adverse health effects.

The three main questions examined in this research were: 1) Do PCB concentrations vary between largemouth bass (Micropterus salmoides), northern pike (Esox Lucius), smallmouth bass (Micropterus dolomieu), and walleye (Sander vitreus) in west Michigan tributaries of Lake Michigan; 2) Do PCB concentrations vary on a watershed level among Manistee …

Nest-Site Selection And Neonate Survival Of Eastern Box Turtles (Terrapene Carolina Carolina) In Michigan’S Northern Lower Peninsula, Joseph T. Altobelli

Masters Theses

Turtles (Order Testudines) are experiencing global declines largely due to anthropogenic influences such as habitat fragmentation, illegal collection and sales, and the threat of global climate change. Removal of individuals from the adult age-classes means there is now a greater need to understand the survival of neonate and juvenile turtle age-classes. In this study I examined a population of eastern box turtles (Terrapene carolina carolina) at the northern limit of their range in Michigan’s lower peninsula. The objectives of my thesis were 1. to determine the microhabitat factors that influence nestsite selection by female box turtles and how …

Wild Turkey Resource Use On Food-Subsidized Landscapes And The Relationship Between Nesting Chronology And Gobbling Activity, Aaron David Griffith

Masters Theses

Across the Southeast, heightened concern exists that wild turkey (Meleagris gallopavo) productivity and populations are declining, but the underlying reasons are largely unknown. Further concern stems from declining turkey harvest in several southeastern states. I answered questions germane to formulating turkey harvest regulations, specifically related to supplemental feeding and the correlation of gobbling timing with nest incubation and the timing of the hunting season. I examined turkey resource use in the Red Hills region of northern Florida and southern Georgia, where supplemental feeding for northern bobwhite (Colinus virginianus) is common. This supplements food availability and may …

The Role Of Calcium In Regulation Of Glial Cell Line Derived Neurotrophic Factor By Skeletal Muscle Cells, Alicia M. Boynton

Masters Theses

Glial cell line-derived neurotrophic factor (GDNF) is an important signaling molecule for the somatic motor nervous system. GDNF protein is produced and secreted by skeletal muscle cells and helps maintain motor neuron innervation at the neuromuscular junction. Treatment with exogenous GDNF prevents denervation which is characteristic of aging and neurodegenerative disease. The therapeutic potential of GDNF cannot be fully explored without understanding the mechanisms by which GDNF protein production is regulated. The primary objective of this study was to determine the role of calcium in regulating GDNF protein expression by skeletal muscle cells. Skeletal muscle cells (C2C12) were grown in …

Genetic Analysis Of Distinct Clades Of Plethodon Cinereus At A Secondary Contact Zone In Northeast Ohio, Brian Waldron

Masters Theses

Contact zones between species, subspecies, or incipient lineages offer important insights into the processes that maintain reproductive isolation. Plethodon cinereus, a highly abundant and wide-ranging terrestrial salamander found in the northeast United States and southeast Canada, provides an excellent model system for studying secondary contact zones. Using mtDNA, six distinct clades have been identified across the range of P. cinereus. Populations of two such clades, the Ohio (OH) clade, which dispersed through central Ohio following receding glaciers of the last glacial maximum, and the Pennsylvania (PA) clade, which dispersed through Pennsylvania and then west through northern Ohio, can be found …

Foliar Mineral Accumulation Patterns Of Gypsophiles And Their Relatives From The Usa And Spain, Clare Muller

Masters Theses

Gypsum endemism in plants (gypsophily) is common on gypsum outcrops worldwide, but little is known about the functional ecology of Chihuahuan Desert gypsophiles. We investigated whether leaf chemistry of gypsophile lineages from the northern Chihuahuan Desert are similar to leaves of related non-endemic (gypsovag) species relative to their soil chemistry. We expected widely-distributed gypsophiles, hypothesized to be older lineages on gypsum, would have distinct leaf chemistry from narrowly-distributed, relatively younger lineages endemic to gypsum and gypsovags, reflecting adaptation to gypsum. We collected leaves from 23 gypsophiles and related non-endemic taxa growing on non-gypsum soils. Soils and leaves were analyzed for …

The Influence Of Matrix Contrast On Species Richness In Fragmented Landscapes, Ian Reider

Masters Theses

Habitat destruction is the leading threat to biodiversity worldwide, causing once continuous landscapes to become fragmented and isolated and harming the persistence of biodiversity. Our goal was to determine how species richness in fragmented forest landscapes is influenced by the vegetation density of the surrounding matrix. We gathered existing studies of fragmented landscapes with Species Area Relationship (SAR) data and analyzed the landscape vegetation in each study site using satellite imagery in ArcGIS. We investigated to see how contrast between vegetation density in matrix versus forested habitat areas correlated to the strength of the SAR for the 45 study landscapes …

Effective Population Size, Demography, And Viability Of Eastern Massasaugas (Sistrurus Catenatus) In Southwest Michigan, Danielle R. Bradke

Masters Theses

As humans increasingly exploit natural areas, wildlife populations face a growing number of threats that often result in population decline and isolation. Small, isolated populations are vulnerable to extirpation due to both genetic and demographic factors. Yet, low detectability of many imperiled species often precludes the collection of population-level data important for assessing population viability and implementing successful conservation. The eastern massasauga (Sistrurus catenatus) is a cryptic pitviper that has been extirpated throughout much of its historic range due to agricultural conversion of wetland habitat and other synergistic threats. Consequently, this species is federally listed as threatened in both the …

Spatial Ecology Of The Adult And Neonate Eastern Box Turtle In A Forested Landscape, Patrick B. Laarman

Masters Theses

A thorough understanding of spatial ecology is fundamental when developing and implementing conservation strategies for imperiled turtle species. I investigated spatial ecology of adult and neonate eastern box turtles in the Manistee National Forest (MNF), Michigan. My primary objectives were to evaluate relative habitat preferences of adults and document residency time of neonates in natal openings. I radio-fitted 25 adults, protected 64 nests, and radio-fitted 66 neonates. Mean home range size for adults (n = 25 turtles) was 16.4 ha ± 2.4 SE (100% Minimum Convex Polygon). I detected non-random habitat use by adults (Wilks Ʌ = 0.202, df = …

The Antipredator Behaviors Of Cryptic And Aposematic Anurans And Variability In Alkaloids, Conspicuousness, And Pattern Within Dendrobates Auratus (Dendrobatidae), Annelise Blanchette

Masters Theses

Crypsis and aposematism are common antipredator strategies that have evolved as defensive mechanisms to prevent predation. Prey that employ these defensive strategies also exhibit antipredator behaviors meant to avoid or deter predation. These behaviors include: (1) escape or immobility in the presence of an immediate predator or (2) exhibiting bold behavior by accepting the risk of potential predation in a novel environment in exchange for the benefits of foraging and mating opportunities. In this study, the escape and bold behaviors of cryptic members of Craugastor and the aposematic dendrobatid Dendrobates auratus were tested to compare these alternative antipredator strategies. Craugastor …

Finally, The Molecular Characterization Of Geitleria: Results In The Formation Of A Newly Described Nostocales (Cyanobacteria) Clade Geitleriaceae Fam. Prov., Sp. Prov, Jonathan Kilgore

Masters Theses

Geitleria was described from a limestone cave in Israel, and subsequently reported from caves of France, Romania, Spain, and Florida, Costa Rica, and Cook Islands. It is morphologically unusual in that it has true-branching, but no heterocytes. A morphologically distinct species of Geitleria was recently collected from a limestone cave in Great Smoky Mountains National Park, Tennessee, and is herein described as G. appalachiana sp. prov. Sequence data for 16S-rRNA and rpoC1 loci for the species were obtained from field material using single filament PCR. Phylogenetic evidence indicates that Geitleria does not belong to any family in the Nostocales containing …

Factors Influencing Impact Of Biological Control Agents Of The Emerald Ash Borer, Theresa Murphy

Masters Theses

Agrilus planipennis, the emerald ash borer (EAB), is a destructive invasive forest pest decimating North American ash trees. Population-wide management of EAB focuses on biological control, with the introduction of four parasitic wasps; one egg parasitoid, Oobius agrili and three larval parasitoids- Spathius galinae, Spathius agrili and Tetrastichus planipennisi. This thesis examines some of the factors influencing the establishment of these larval biocontrol agents. Chapter 1 examines the relationship between woodpeckers and the parasitoids S. agrili and T. planipennisi. Both woodpeckers and these parasitoids attack the larval stage of EAB, which means their impacts overlap and …

An Adult Zebrafish Brain Atlas To Investigate Shh Mediated Cell-Cell Signaling In Neurogenic Zones, Alyssa P. Lutservitz

Masters Theses

Adult neurogenesis occurs in proliferative zones of the brain that contain neural progenitor cell populations capable of differentiating into specific cell types. However, we remain limited in our understanding of the signals that regulate neural progenitor cell proliferation and differentiation in adults. Recently zebrafish (Danio rerio) have emerged as an excellent model for studying the molecular mechanisms behind adult neurogenesis, because sixteen proliferative zones remain active in the adult brains. Thousands of fluorescent transgenic reporter lines have been generated in zebrafish that reveal gene expression patterns of cell-cell signaling systems, some of which may regulate neurogenesis in these …

Variation In Cranial Morphology Of Polymorphic Populations Of The Eastern Red-Backed Salamander, Plethodon Cinereus, Marissa Ganzfried

Masters Theses

Differences in cranial morphology among species of plethodontid salamanders have been linked to variations in diet and behavior. Individuals that consume smaller prey have larger jaw to posterior-cranium ratios. Elongation and expansion of the jaw, coupled with expansion of the posterior of the cranium (defined as robustness) are positively associated with individuals that exhibit increased levels of aggression. The bulk of previous research has focused on the effects of interspecific competition on cranial morphology; however, polymorphic populations of the Eastern Red-backed Salamander, Plethodon cinereus, represent a unique opportunity to examine the role of cranial morphology in ecological divergence among individuals …

Classification Of Basal Cell Carcinoma Using Telangiectatic Vessels And Machine Learning, Hemanth Yadav Aradhyula

Masters Theses

“Basal cell carcinoma (BCC) is one of the most common types of skin cancer in the United States. Early detection of BCC by noninvasive techniques can decrease delay in treatment and save cost. A recent study estimated that 5.4 million cases of non-melanocytic skin cancer (NMSC) occur each year in the US. BCC accounts for 50% of NMSC cases. Telangiectasia, which appears in most BCCs is an important feature for identification of BCC for an automatic diagnostic system. In this thesis, three methods for detection of telangiectasia present in dermoscopy lesion image (DI) were proposed. Detected telangiectasia in DI was …

Media Optimization, Scale-Up And Repeated Fed-Batch Operations For The Production Of 1,3-Propanediol From Glycerol By Halanaerobium Hydrogeniformans, Shivani Kalia

Masters Theses

"The development of renewable energy sources, such as biofuels, is of great interest in today's world due to depletion of fossil fuels and concerns about climate change. The production of the main by-product, crude glycerol, in biodiesel production presents an opportunity for the production of industrially relevant commodities. Crude glycerol in biodiesel waste is highly impure and possesses high salt concentrations and alkalinity, making it infeasible for direct industrial utilization. Moreover, current glycerol purification methods are highly cost-intensive, necessitating a search for cost-effective approaches that are feasible to employ. Genome data analysis of Halanaerobium hydrogeniformans, revealed the metabolic capability …

Investigating The Sources And Dynamics Of Escherichia Coli In A Missouri Ozarks Watershed, Kaleb Bassett

Masters Theses

"Escherichia coli, an intestinal bacterium, can serve as an indication of the presence of pathogenic microorganisms in water systems used by humans for recreation, agriculture, or drinking water. Many aquatic systems in the United States exceed the E. coli standard, set by the Environmental Protection Agency, for safe drinking water and recreational use. During 2016, a water sampling program was established in the Mill Creek watershed, a rural watershed located near the city of Newburg in Phelps County, Missouri. Water samples were collected before, during, and after storms throughout the year to examine the relationship between E. coli …

Combination Of Bmp-2 And Relaxin To Induce Osteogenesis In Vivo, Sahitya Injamuri

Masters Theses

"Bone grafts are a common procedure for treating craniofacial injuries such as trauma, surgery, and reconstruction. Autografts and allografts have limitations which encourages the use of synthetic bone grafts. While synthetic bone grafts, such as hydroxyapatite (HA) microspheres, are advantageous for their cost and reproducibility, they lack the cells and growth factors needed for proper osteoinduction. Bone morphogenetic protein-2 (BMP-2) has been shown to increase the osteoinduction of grafts but the effective dose is above physiological levels and causes undesired effects on the body. Relaxin has been shown to enhance BMP-2's ability to induce bone formation in vitro and thus …