Life Sciences Commons^™

Flight Of The Freshwater Fish, Michael H. Wilson

Capstones

Michael H. Wilson

Capstone Abstract

December 27, 2016

Flight of the Freshwater Fish

The Hudson River provides for millions of people as a path for commercial and private transportation, a source of food and energy, and perhaps most importantly for many living in the tri-state area as a destination for recreation and relaxation. The most overlooked feature of the river is how the wildlife shows clear signs of a changing climate and rapid environmental response to the impacts of global warming on the river.

Entire populations of fish species in the lower Hudson have been forced to leave the river …

An Analysis Of Gulf Of Maine Cod Metapopulation Structure And Localized Stability, With Application To Area-Based Fisheries Management, Derek Olson

Electronic Theses and Dissertations

The complex metapopulation structure of groundfish stocks in the Gulf of Maine, particularly Atlantic cod (Gadus morhua), is largely ignored under the current system of broad-scale stock assessment and management. This mismatch of biological and administrative scales has contributed to severe overall stock decline and localized serial depletion of Gulf of Maine cod. Such chronic management failure has led to growing calls for a more area-based, finer-scale approach to managing groundfish in the Gulf of Maine. A primary difficulty hindering the development of finer-scale groundfish management has been the challenge of estimating fishing mortality upon local stock components. …

The Forgotten Cousin In Freshwater Community Ecology: Tidal Freshwater Wetlands, Jack R. Mclachlan

Electronic Theses and Dissertations

Tidal freshwaters are unique in their placement in the landscape, forming where freshwater riverine flows are sufficient to overwhelm the saline water of the incoming tide, but not strong enough to suppress tidal water-height fluctuations. Tidal freshwaters and their wetlands have been overlooked by freshwater and marine researchers alike; neither discipline considers tidal freshwaters to fall under their purview. Invertebrate communities in tidal freshwaters are thought to be species depauperate; the consensus is that they support fewer taxa than nearby non-tidal freshwaters, but little is known about how these communities are structured. This study investigated how tidal hydrology, an atypical …

Roles Of Siphon Flows In Suspension Feeding, Kevin Du Clos

Electronic Theses and Dissertations

Benthic marine suspension feeders provide an important link between benthic and pelagic ecosystems. The strength of this link is determined by suspension-feeding rates. Many studies have measured suspension-feeding rates using indirect clearance-rate methods, which are based on the depletion of suspended particles. Direct methods that measure the flow of water itself are less common, but they can be more broadly applied because clearance-rate measurements are affected by properties of the cleared particles. We present pumping rates for three species of suspension feeders, the clams Mya arenaria and Mercenaria mercenaria and the tunicate Ciona intestinalis, calculated using a direct method …

Behavioral Effects Of Envrionmental Enrichment Devices Of Tursiops Truncatus, Stephanie Maiorano

Honors Projects

Many studies on environmental enrichment devices have been conducted throughout the years on both terrestrial and marine animals in captivity. However, little is known on the effect that submergible enrichment devices have on cetaceans in captivity. This study examines two male Atlantic bottlenose dolphins (Tursiops truncatus), Kaiko’o and Nalu, at Sea Life Park, Hawai’i and their interaction with the Magic Box: a device consisting of a submergible vegetable crate weighed down with a weight, flipped upside down with fish underneath. A total of 7 trials were conducted, with data collection on their surfacing behavior before and after the …

Using Gis To Predict Cetacean Strandings Related To Harmful Algal Blooms, Jessica L. Boyd

HCNSO Student Capstones

Exposure to harmful algal bloom (HAB) toxins, such as Karenia brevis, has been linked to cetacean strandings and mortalities. Biological and environmental data from a bottlenose dolphin (Tursiops truncatus) Unusual Mortality Event (UME) in 2004 are compared to those from pilot whale (Globicephala macrorhynchus) mass stranding events in 2013-2014 in western Florida. Geographical Information Systems (GIS) maps have been created by overlaying stranding locations and select K. brevis presence data in order to identify common spatial and temporal trends. Preliminary results indicate that elevated K. brevis levels (>10,000 cells/L) in Sarasota Bay during January-February and November may …

A Review Of Present And Alternative Lionfish Controls In The Western Atlantic, Adam Rittermann

HCNSO Student Capstones

Lionfish (Pterois volitans and Pterois miles) are the first recorded invasive piscivore in the Caribbean and have become a threat to native species. As generalist consumers, lionfish have a broad diet and reduce prey and competitor abundance and juvenile recruitment. To confront this problem, this paper serves to review all of the current and alternative future controls available to manage lionfish populations in the Western Atlantic and determine where focus is lacking. Derby and cull efforts are the only management efforts in place and are not effective in their current state as these local events have short-term benefits, …

An Evaluation Of The Seagrass Habitat In North Biscayne Bay, Florida, In Relation To A Changing Environment And Urbanization In The Port Of Miami Harbor Basin 2005-2011, Sara M. Jarossy

HCNSO Student Theses and Dissertations

Seagrass habitats in South Florida are exceptionally valuable. They play an important ecological role in the coastal environment by stabilizing sediment, providing habitat for other species and supporting a whole food web. The availability of light and nutrients in aquatic ecosystems are the driving factors behind seagrass distribution. Water quality has been known to influence the abundance, distribution and composition of seagrass beds. South Florida has extensive diverse coastal communities. Throughout its human development dramatic changes have occurred in its natural ecosystems. In South Florida, many examples of seagrass habitat loss are documented, with a variety of contributing factors. The …

Population Demographics And Sexual Reproduction Potential Of The Pillar Coral, Dendrogyra Cylindrus, On The Florida Reef Tract, Lystina Kabay

HCNSO Student Theses and Dissertations

The pillar coral, Dendrogyra cylindrus, has been commonly described as widely distributed, but rare throughout its geographical range in the Caribbean. Having recently been listed as Threatened under the US Endangered Species Act, an understanding of population status is needed to promote species conservation and population recovery. Previous to this study the status of the pillar coral population in the state waters of Florida, U.S.A, was relatively unknown primarily due to few colonies being recorded and no comprehensive summary of population abundance, distribution or health being completed. Along with various environmental and anthropogenic factors affecting the pillar coral population …

Coral Recovery On Phase-Shifted Reefs Depend Upon The Type Of Macroalgae Present, Justin N. Voss

HCNSO Student Theses and Dissertations

The Florida Keys experienced some of the most drastic transitions from coral to macroalgae dominated states, known as phase-or regime-shifts, of any reefs in the Caribbean. Macroalgae on coral reefs lower coral recruitment by deterring coral settlement either directly through competition or indirectly by changing the chemical environment near the benthos. With evidence of species-specific interactions to coral-macroalgae competition, the type of macroalgae on a phase-shifted coral reef might be more important than just identifying a reef transition. To answer this question, I tested the effect of Laurencia intricata (a macroalgae related to the settlement inducing crustose coralline algae) and …

Effects Of 17 Β-Estradiol And Progesterone On Acropora Cervicornis And Porites Astreoides Growth And Reproduction, Joshua L. Stocker

HCNSO Student Theses and Dissertations

Reef-building coral populations throughout the world are being threatened by numerous stressors and continue to decline. As potent endocrine-disrupting compounds, exogenous sex steroid contamination has been a largely overlooked stressor to corals. Previous research indicates these compounds are prevalent in marine environments, fluctuate annually along with reproductive cycles, can bioaccumulate, and have had variable effects on growth and reproduction in several cnidarian species. This project had three primary objectives: (1) establish environmental estradiol and progesterone concentrations in Broward County and lower Florida Keys reef environments, (2) conduct 17 β-estradiol and progesterone larval assays on P. astreoides larvae to determine the …

The Vertical And Horizontal Distribution Of Deep-Sea Crustaceans Of The Order Euphausiacea (Malacostraca: Eucarida) From The Northern Gulf Of Mexico With Notes On Reproductive Seasonality., Charles Douglas Fine

HCNSO Student Theses and Dissertations

The vertical and horizontal distributions of Euphausiacea in the northern Gulf of Mexico, including the location of the Deepwater Horizon oil spill, were analyzed from 340 trawl samples collected between April-June, 2011. This study is the first comprehensive survey of euphausiid distributions from depths deeper than 1000 m in the Gulf of Mexico and included stratified sampling from five discrete depth ranges (0-200 m, 200-600 m, 600-1000 m, 1000-1200 m, and 1200-1500 m). In addition, this study encompasses the region heavily impacted by the Deepwater Horizon oil spill. Data presented here could potentially be used in ecosystem models investigating trophic …

Trophic Ecology Of Green Turtles (Chelonia Mydas) From Dry Tortugas National Park, Florida, David C. Roche

HCNSO Student Theses and Dissertations

Located 100 km west of Key West, Florida, Dry Tortugas National Park (DRTO) is a largely untouched subtropical marine ecosystem that serves as an important developmental habitat, nesting ground, and foraging area for several species of sea turtles, including green turtles. The Park supports a recovering population of green turtles comprised of resident juveniles, subadults, and adults of both sexes; nesting females include residents and migrating females that only return to nest. Stable isotope analysis has been applied widely to describe the trophic ecology of green turtles, from urbanized bays with significant anthropogenic input, to relatively pristine ecosystems with healthy …

Environmental Dna Detection Of Invasive Species, Geneva York

Electronic Theses and Dissertations

Invasive species cause catastrophic changes to environments they are introduced into. Early detection offers the best chance at controlling the spread and mitigating any potential damages caused by the invaders. Environmental DNA (eDNA) has emerged as a more sensitive and cost effective alternative to traditional survey approaches to detection. In this study, I designed primer-probe sets for use in quantitative PCR detection of three invasive Centrarchid species, Largemouth Bass (Micropterus salmoides), Smallmouth Bass (Micropterus dolomieu) and Black Crappie (Pomoxis nigromaculatus). I surveyed 21 water bodies in Maine during two seasons (winter and spring). I …

Gulf Sturgeon (Acipenser Oxyrinchus Desotoi) Pre-Restoration Occupancy Patterns On Ship Island, Mississippi Sound With An Evaluation Of Designated Critical Habitat Use By Eastern And Western Population Segments, Page Elizabeth Vick

Master's Theses

Critical spawning and feeding habitat was designated for federally threatened, anadromous Gulf Sturgeon (GS) to aid in population recovery. This study examined GS occupancy, habitat use, and movement through critical habitat monitored by the Ship Island (SI) acoustic array during overwintering periods from 2011 to 2015 prior to MsCIP SI restoration. An occupancy index analyzed patterns of spatial and temporal habitat use of both western and eastern population segments (WPS and EPS, respectively) of GS on the SI array. The ends of SI along with the passes and cuts of the island, especially Dog Keys Pass (DKP), were occupied by …

Bloom Or Bust: Retrospective Analysis Of The Giant Jellyfish, Nemopilema Nomurai (Scyphozoa: Rhizostomeae), Ecology In The East Asian Marginal Seas, Naomi Yoder

Master's Theses

The Giant Jellyfish, Nemopilema nomurai, is a large-bodied bloom-forming jellyfish that occurs in the semi-enclosed basins of the East Asian Marginal Seas. N. nomurai has bloomed more frequently in the past 20 years than in any period previously recorded. In Japan, recent N. nomurai blooms were responsible for millions of dollars in lost revenue and equipment damage to commercial fisheries alone. This study statistically analyzed 21 environmental factors in connection with N. nomurai occurrence (using occurrence as a proxy for blooms). Eight factors resulted in a statistically significant or marginally significant (p ≤ 0.10), linear or non-linear relationship with …

Effect Of Oxygen-Limiting Tidal Conditions On Muscle Metabolism And Structure In The Giant Acorn Barnacle, Balanus Nubilus, Katie O. Grady

Master's Theses

Crustacean muscle fibers are some of the largest cells in the animal kingdom, with fiber diameters in the giant acorn barnacle (Balanus nubilus) exceeding 3 mm. Sessile animals with extreme muscle sizes and that live in the hypoxia-inducing intertidal zone – like B. nubilus – represent ideal models for probing the effects of oxygen limitation on muscle cells. We investigated changes in metabolism and structure of B. nubilus muscle in response to: normoxic immersion, anoxic immersion, or air emersion, for acute (6h) or chronic (6h exposures twice daily for 2wks) time periods. Following exposure, we immediately measured hemolymph …

Hydroacoustic Analysis Of The Effects Of A Tidal Power Turbine On Fishes, Haley Viehman

Electronic Theses and Dissertations

Tidal currents help shape coastal marine environments and are essential in life cycles of many fish species. Areas with strong tidal currents are also targeted by humans for energy extraction via tidal energy turbines. The effects of these devices on fishes are difficult to predict because fish behavior within fast tidal currents is largely unstudied. Based at a tidal energy site in Cobscook Bay, Maine, this work sought to describe fish reactions to a tidal energy device, to understand the natural presence of fish at the site, and to provide guidance for future monitoring of tidal energy device effects in …

Examining The Combined Effects Of Dissolved Oxygen, Temperature, And Body Size On The Physiological Responses Of A Model Macrobenthic Polychaete Species, Capitella Teleta, Kelsey Burns Gillam

Dissertations

While the scientific community is in consensus that coastal systems are threatened by climate change, few climate change studies test the effects of more than one variable directly related to climate change. The dissolved oxygen (DO) levels of the ocean are currently subject to both global warming and eutrophication; 94% of all hypoxia zones are expected to experience >2°C increase by 2035. This dissertation aims to examine how a model organism responds to simultaneous thermal and DO stress involving four levels of DO (100%, 70%, 50%, and 20%) saturation and three temperatures (15°C, 20°C, and 25°C).

The polychaete, Capitella teleta …

Ports, Prosperity, And Pests: Assessing The Threat Of Aquatic Invasive Species Introduced By Maritime Shipping Activity In Cuba, Charleen O'Brien

HCNSO Student Theses and Dissertations

Aquatic invasive species (AIS) are biological pollutants that cause detrimental ecological, economic, and sociological effects on non-native communities. With increasing globalization through maritime trade, coastal ports are vulnerable to AIS introductions transported by commercial vessels. As Cuba’s Port Mariel becomes a competitive transshipment hub within the Caribbean, it is essential to identify the potential threat that AIS may pose with a likely increase in shipping activity. It is equally important to understand the status of established AIS in Cuba and control measures presently being implemented by the country. This information can provide guidance for establishing or improving Cuban AIS preventative …

Linking Rising Pco2 And Temperature To The Larval Development, Physiology And Gene Expression Of The American Lobster (Homarus Americanus), Jesica Waller

Electronic Theses and Dissertations

Anthropogenic warming and ocean acidification are occurring as CO₂ continues to accumulate in the atmosphere (OA). Few studies have evaluated the joint effects of elevated temperature and partial pressure of CO₂ (pCO₂)on marine organisms. In this study we investigated the interactive effects of Intergovernmental Panel on Climate Change (IPCC) predicted temperature and pCO₂ for the end of the 21st century on key aspects of larval development of the American lobster, Homarus americanus, an otherwise well-studied, iconic, and commercially prominent species in the northeastern United States and Atlantic Canada. Our experiments showed …

Regional Recruitment Dynamics And Seasonal Ecology Of Juvenile Bluefish (Pomatomus Saltatrix), David G. Stormer

Doctoral Dissertations

Recruitment in fishes, defined as the survival of a cohort through the first year of life, can be highly variable and affected by small changes in biological and physical factors. Much of the historical focus into the sources of recruitment variability has concentrated on the larval stage, but recent attention has shifted to the relatively longer juvenile period. Spawning behavior that results in the production of multiple cohorts over time and space within a year-class may dampen recruitment variability by decreasing natural mortality risk. The bluefish (Pomatomus saltatrix) is a migratory marine species that produces multiple cohorts of …

Abundance And Diversity Of Deep-Sea Crustaceans Of Bear Seamount, New England Seamount Chain, Valerie Renee Miranda

HCNSO Student Theses and Dissertations

Bear Seamount (39° 55’ N; 67° 30’ W) is the westernmost peak of extinct undersea volcanoes in the New England Seamount Chain (Moore et al., 2003). It is located on the continental slope off Georges Bank, and is governed by unique environmental factors and currents that may be unlike those of the other seamounts (Moore et al., 2003). Previous cruises to this seamount have been successful in capturing abundant fishes, cephalopods and invertebrates (Moore et al., 2003; Moore et al., 2004; Moore et al., 2008), but only the distribution patterns of the fishes and cephalopods have been examined, leaving a …

Increasing Shipping Traffic Through The Bering Strait: Challenges Of International Policy In A Rapidly Changing Climate And Managing Impacts To Regional Cetacean Populations, Laura Morse

HCNSO Student Capstones

The Arctic region is experiencing growth in marine traffic as seasonal ice conditions shift to longer periods of open water and vessel improvements that have allowed for transit in heavier ice conditions. Regionally, Russia is improving existing transportation infrastructure to support increased traffic along the Northern Sea Route. As a result of these and other factors, shipping traffic is increasing through the Bering Strait and Bering Sea. Regulating traffic in these areas is more complex than most other areas in US waters given the presence of an international strait subject to international regulation through the International Maritime Organization. The US …

Quantifying The Toxicity Of 1-Methylnaphthalene To The Shallow-Water Coral, Porites Divaricata, For Use In The Target Lipid Model, Nicholas Turner

HCNSO Student Theses and Dissertations

The proximity of coral reefs to coastal urban areas and shipping lanes predisposes corals to petroleum pollution from multiple sources. Previous research has evaluated petroleum toxicity to coral using a variety of methodologies, including monitoring effects of acute and chronic spills, in situ exposures, and ex situ exposures with both adult and larval stage corals. Variability in toxicant, bioassay conditions, species and other methodological disparities among studies prevents comprehensive conclusions regarding the toxicity of hydrocarbons to corals. This research evaluated the 48-hour toxicity of 1-methylnaphthalene to Porites divaricata using a continuous-flow passive dosing system. The range-finding exposure evaluated the dosing …

Insulin-Like Growth Factor Pathway Described In Austrofundulus Limnaeus Diapause And Escape Embryos, Steven Cody Woll

Dissertations and Theses

Development in the annual killifish Austrofundulus limnaeus can follow two distinct developmental trajectories. Typical development includes the entrance of embryos into a state of metabolic and developmental arrest termed diapause. Alternately, embryos can escape diapause and develop directly without pause. These two trajectories are characterized by differences in the rate and timing of developmental, morphological, and physiological traits. Insulin and Insulin-like growth factor (IGF) signaling (IIS) is known to regulate entrance into diapause in a variety of invertebrates. In this thesis I explore the possible role of IGFs in the regulation of development and diapause in embryos of A. limnaeus …

Settlement Of Larval Spotted Sand Bass (Paralabrax Maculatofasciatus) Within Mission Bay, San Diego Ca In Relation To Environmental Conditions, Anthony J. Basilio

Theses

Monitoring the number of larvae that have recently settled and how this varies in relation to environmental conditions provides insight into future population strength, which is a fundamental goal of marine ecology as well as fisheries management. This research focused on characterizing the settlement patterns of spotted sand bass (Paralabrax maculatofasciatus), a recreationally important species that utilizes bays and estuaries as nursery habitat. To quantify P. maculatofasciatus settlement patterns, three larval collectors were installed near the mouth of Mission Bay, San Diego CA, and retrieved weekly from June – October of 2012 – 2015. Larvae were counted, and …

Population Genetic Structure Of Softshell Clams (Mya Arenaria) With Regard To A Saxitoxin-Resistant Mutation And Neutral Genetic Markers In The Gulf Of Maine, Jennifer Phillips

Electronic Theses and Dissertations

The softshell clam, Mya arenaria, is a commercially important bivalve species that is found in soft-bottom intertidal habitats throughout the Gulf of Maine, USA. This species is subjected to seasonal blooms of the toxic algae Alexandrium spp., and acts as a vector for paralytic shellfish poisoning (PSP) during harmful algal bloom (HAB) events. Some clams possess a naturally occurring genetic mutation of their voltage-gated sodium channels that grants them a resistance to the paralytic effects of saxitoxin (STX) produced by Alexandrium spp. The mutation allows these individuals to continue feeding during HABs, and greatly increases their tissue toxicity through …

Size As A Trait For Understanding The Role Of Zooplankton In The Biological Carbon Pump, Karen Stamieszkin

Electronic Theses and Dissertations

Living organisms impact carbon transport between the atmosphere and the ocean through the biological carbon pump. Some plankton communities augment carbon export from the ocean’s surface, and are thought to have a major role in global climate. These export communities are often characterized by larger organisms that sink to depths where the carbon they contain is sequestered from the atmosphere. Zooplankton can enhance export by aggregating prey into larger sinking fecal pellets; however fecal pellet flux is a highly variable component of the biological carbon pump. Relating plankton trophic dynamics to changes in particulate carbon flux is an important step …

Community Structure And Production Of The Macrobenthos On Four Artificial Reefs In The Mississippi Sound In Relation To Substrate And Profile Type, Patrick Daniel Gillam

Master's Theses

In recent years, the Mississippi Department of Marine Resources (DMR) has made a concerted effort to enhance its coastal fishery resources by creating artificial reefs. Through this effort, 73 nearshore reefs have been created across the MS coast. Different substrate types used to construct MS artificial reefs include oyster shell and cement rubble. Two types of reef architecture used include high profile breakwater and low profile submerged structures. This study compared the benthic biota associated with oyster shell and cement rubble substrates among four artificial reefs representing high and low profile structures in summer 2011. Colonized benthic biota were quantified …