Life Sciences Commons^™

Developing A Practical Wireless Monitoring Solution For A Size-Constrained, Low-Power, Biomechanical, Sports Telemetry System, Jeffery Ray King

Open Access Theses

As sport-related concussions become more prevalent, the ability to quickly and reliably assess brain injury risk is increasingly essential. Commercially-available systems exist with the goal of assessing the risk of traumatic brain injury in athletes in real-time. These systems utilize a pre-determined acceleration threshold, discarding all captured information below this arbitrary threshold. The use of an event-based model to assess the risk of traumatic brain injury has been shown to be inadequate. Therefore, these systems falsely promote "accurate" real-time communication of risk. Research conducted by the Purdue Neurotrauma Group (PNG) seeks to advance the field by developing a biomechanical sports …

Using Individual-Based Modeling To Explore How Environmental And Anthropogenic Factors Impact Piping Plover Breeding Success, Alexander J. Cohen

Open Access Theses

The Piping Plover (Charadrius melodus) is an intensively managed shorebird species which breeds in part along the Atlantic Coast. Major threats to Piping Plovers include habitat loss and degradation, predation, human disturbance, and vulnerability to the elements. Common management techniques include predator exclosures and symbolic fencing around nests to deter humans from entering nesting areas. However, Piping Plover productivity is highly variable even with management. Many site- and season-specific factors affect plovers and their interactions with other inhabitants of the beach environment. Variability in magnitude and patterns of human disturbance, plover behavioral tolerance of disturbance, and a variety of beach …

New Strategies To Reveal Protein Candidates In Protein-Protein Interactome Study, Meng-Chieh Chen

Open Access Theses

Comprehensive protein-protein interaction network analysis can help reveal protein functions in a system-wide manner. A reliable knowledgebase of interaction networks is not only important for selecting the candidates for drug therapies, but also for evaluating the disease risk. In current interaction databases, 322579 interactions comprised of 56460 proteins have been reported (statistical analysis from APID: Agile Protein Interaction DataAnalyzer; http://bioinfow.dep.usal.es/apid/index.htm). The huge datasets are contributed mainly by yeast -two -hybrid (Y2H) screening and affinity-purification followed by mass spectrometry (AP-MS). High false positive rates and failing to cover certain interaction categories are the limitations of these two methods. Here, we developed …

Nitrate Removal From Subsurface Drainage By Denitrifying Bioreactor, Erin Chichlowski

Open Access Theses

Denitrifying bioreactors are an edge-of-field best management practice that reduce nitrate in runoff and subsurface drainage waters with minimum surface foot print and management requirements. The objectives of this study included evaluating a 173 m3 wood chip bioreactor for nitrate reduction and removal rates, the effects on phosphorus, and the impacts of the bioreactor's physical characteristics on effective nitrate reduction During periods of flow, weekly water samples were collected for lab analysis of nitrate+nitrite (nitrate-N), total nitrogen (TN), soluble reactive phosphorus (SRP), and total phosphorus (TP) and measurements were made of water temperature, dissolved oxygen, pH, oxidation reduction potential, temperature, …

Profit-Maximizing Responses To Climate Change In Commodity Agriculture: Does Adaptation Matter?, Sajeev Erangu Purath Mohankumar

Open Access Theses

Accumulation of greenhouse gases in the atmosphere has led to rising temperatures, and is expected to lead to a change in climate. Crop yields are vulnerable to these changes. Adaptation is expected to be key to combating climate change impacts, but the effectiveness of adaptation strategies is not well understood. Hence, there is a need to assess the impacts of climate change on agriculture and devise profitable adaptation strategies to combat its effects. This study uses historical and three projected climate data sets to simulate yields using the crop model Daycent, empirical relationships between weather and agronomic variables that influence …

The Impact Of An Omega-3 Enriched Diet On Hyperactivity And Biochemistry In An Animal Model For Attention-Deficit/Hyperactivity Disorder, Nadine M. Hammoud

Open Access Theses

Attention-deficit/hyperactivity disorder (ADHD) is the most diagnosed behavioral disorder in children. It affects around 5% of children worldwide and 11% of children in the United States, with rates increasing. Pharmaceutical treatments, such as amphetamines and methylphenidates, are not effective for everyone and are known to have unwanted side effects. While the etiology of the disorder is not yet fully understood, there are clear genetic and environmental components. Nutritional insufficiencies have recently become a popular environmental risk factor under investigation. Essential fatty acids (EFA), omega-3 polyunsaturated fatty acids (PUFA) in particular, are needed for proper brain development and function. Our lab …

Postural Sway In Infants At Low And High Risk For Autism Spectrum Disorder, Rachel C. Harris

Open Access Theses

ABSTRACT Harris, Rachel C. M. S., Purdue University, December 2014. Postural Control in Infants at Low and High Risk for Autism Spectrum Disorder. Major Professor: Laura J. Claxton. Autism Spectrum Disorder (ASD) is a neurodevelopmental disorder more commonly known for deficits in social and communication skills. More recently, aspects of motor development have been shown to be delayed in children with ASD, including deficits in their postural control abilities. Children with ASD have difficulty integrating information from their sensory systems to help control their balance. Infants at risk for ASD and infants who are later diagnosed with ASD have delays …

Producer Perceptions Of Their Use Of Time And Various Areas Of Risk In Their Business, Kendra Marie Hedge

Open Access Theses

Agribusinesses rely on producers choosing their products and services for the success of their business. Agribusinesses can use information regarding how producers rate the importance of certain areas of risk and what takes most of the producers' time to offer specific services to different segments of producers to better meet their needs. An ordered logit model and a multinomial logit model are used to determine factors significant to producers' use of time and importance of various areas of risk. The producers are then segmented into groups based on their risk perceptions. From this research, agribusinesses can recognize that different types …

Automatic Extraction Of Plots From Geo-Registered Uas Imagery Of Crop Fields With Complex Planting Schemes, Anthony A. Hearst

Open Access Theses

Complex planting schemes are common in experimental crop fields and can make it difficult to extract plots of interest from high-resolution imagery of the fields gathered by Unmanned Aircraft Systems (UAS). This prevents UAS imagery from being applied in High-Throughput Precision Phenotyping and other areas of agricultural research. If the imagery is accurately geo-registered, then it may be possible to extract plots from the imagery based on their map coordinates. To test this approach, a UAS was used to acquire visual imagery of 5 ha of soybean fields containing 6.0 m2 plots in a complex planting scheme. Sixteen artificial targets …

Quality And Safety Attributes Of Sun-Dried Raisins From Afghanistan, Stacy A. Mccoy

Open Access Theses

Raisins are an important export commodity for Afghanistan, however, Afghan packers are challenged to export to markets seeking high quality products due to limited knowledge regarding their quality and safety. To evaluate this, Afghan raisin samples from pre-, semi-, and post-processed raisins were obtained from a raisin packer in Kabul, Afghanistan. The raisins were analyzed and compared to U.S. standards for processed raisins. The samples tested did not meet U.S. import standards for embedded sand, but the process used to clean the raisins is suitable to maintain food safety standards.

Previous Afghan raisin shipments have been rejected from the U.S. …

Analyzing The Importance Of Diversifying Beyond Tobacco For Small-Scale Farmers In Malawi, Mphatso Charity Mbulukwa

Open Access Theses

This thesis analyses potential agricultural alternatives to production and marketing of tobacco in Malawi. I study existing patterns of crop and income diversification and factors that limit crop diversification. I also provide an analysis of the current profitability of different important cash crop alternatives that are commonly grown among smallholder farmers and compare their profitability to that of tobacco.

Following a review and synthesis of available literature on alternatives to tobacco, analysis is presented that relies upon data collected in 2009 from 380 households in Kasungu and Machinga districts of Malawi. Simpsons Index of diversification was used to measure the …

Defining Management Strategies To Maximize Net Soil Carbon And Nitrogen Retention In Turfgrass Systems, Quincy D. Law

Open Access Theses

Soil carbon (C) sequestration has been proposed as a method to reduce atmospheric carbon dioxide (CO2 ). Managed turf areas are both a source and a sink for greenhouse gases (GHGs) including CO 2 , methane (CH4 ), and nitrous oxide (N2 O), among others. Management practices, including turfgrass selection and mowing, influence the amount of C and N stored in the soil, as well as the direct and indirect GHG emissions. Thus, the objective of this research was to determine how turfgrass selection (both species and cultivar) and mowing practices (such as frequency and grass clipping management) influence the …

The Decline Of Cisco Coregonus Artedi At Its Southern Range Extent: Stock Biology And Management Implications, Andrew E. Honsey

Open Access Theses

The cisco Coregonus artedi is distributed throughout northern North America and is relegated to coldwater, oligotrophic systems. Populations of cisco located at the species' southern range extent, including northern Indiana and southern Michigan, have drastically declined over the past century, seemingly due to a combination of climate warming and exacerbation of hypolimnetic hypoxic conditions via intensive land-use and resulting increases in nutrient loading. Apart from their decline, information on southern ciscoes is lacking, including basic stock demography and genetic variability. Such information may shed light on the likely sustainability (or lack thereof) of remaining populations. The first portion of this …

Management Of Bacterial Wilt On Muskmelon Using Actigard, Fawzia Mumtaz

Open Access Theses

Bacterial wilt of muskmelon caused by Erwinia trachephila (E.F. Smith), is one of the most important diseases of cucurbits, particularly muskmelon, in the world. This pathogen is transmitted by the striped cucumber beetle,Accalyma vittatum (F.), and causes serious economic losses in fruit yield and quality. Control of this disease is usually accomplished by applying insecticides to kill the beetles before disease transmission occurs. The goal of this study was to reduce the bacterial wilt incidence or beetle feeding on muskmelon using an alternative control method, the plant activator acibenzolar-S-methyl (Actigard) ® . The potential for using acibenzolar-S-methyl as a …

Suitability Of Blue Ash (Fraxinus Quadrangulata) And Green Ash (F. Pennsylvanica) To Emerald Ash Borer (Agrilus Planipennis) And Its Larval Parasitoid Tetrastichus Planipennisi., Donnie "L. " Peterson

Open Access Theses

Emerald ash borer (EAB) (Agrilus planipennis ) is a primary pest that has killed tens of millions of North American ash (Fraxinus spp.) trees. The larval parasitoid Tetrastichus planipennisi was introduced from China as part of a classical biological control program for long-term EAB management. The high mortality rates of ash trees greatly reduce the number of EAB hosts and may make it difficult for parasitoids to persist. However, blue ash ( F. quadrangulata ) is relatively resistant and appears to be able to survive EAB infestation. If natural enemies can attack EAB in infested blue ash they …

Creating Initial Digital Soil Properties Map Of Afghanistan, Shams R. Rahmani

Open Access Theses

Afghanistan is a country with a population of more than 31 million people and is located in south central Asia. The total arable land in the country is 12%, 5% is irrigated and the remaining 7% is rainfed. Due to the lack of available soil information, poor farming practices and land management planning severely affect the yield of agriculture products. In order to ensure sustainable agriculture and prevent land degradation problems, understanding spatial variability of soil is crucial. The overall objective of this research study was to use digital soil mapping techniques to identify the soil resources and generate a …

Effect Of Post-Anthesis Fungicide Applications To Manage Fusarium Head Blight In Winter Wheat, Anna Noversoke

Open Access Theses

Fusarium head blight (FHB) of wheat, caused by the fungus Fusarium graminearum, is currently considered one of the most economically important diseases on wheat in the North Central United States. The fungus causes light-weight "tombstone" grains to form and produces the mycotoxin deoxynivalenol (DON), reducing the yield and quality of the grain. Currently, farmers rely heavily on the sterol demethylase Inhibitor (DMI) triazole fungicide Prosaro (Bayer CropScience) to protect their crop from this disease. The optimal fungicide application timing is traditionally believed to be early anthesis - Feekes Growth Stage (FGS) 10.5.1. However, environmental conditions and uneven flowering across a …

Invasive Silver Carp (Hypophthalmichthys Moltrix) Protein Hydrolysates And Their Efficacy In Increasing Seedling Vigor And Reducing Seed Borne Pathogen Growth, Shanleigh Pauline Thomson

Open Access Theses

Silver carp are an invasive fish species introduced into the United States within the last forty years. Unable to be effectively eradicated or commercialized as a source of food, other methods must be developed to control and/or use these fish. Fish protein hydrolysates (FPH) are products derived from the proteins inherent within fish. Development of FPH from Silver carp for a variety of uses could aid in controlling their expanding population and provide organic produces with a seed treatment option which is not available to them currently.

In the first study, FPH were used as a seed vigor treatment for …

The Effects Of Heat Stress On Immunity In Laying Hens And Dairy Cattle, Rebecca Ann Strong

Open Access Theses

With the increase in global climate change and the population growth driving the high demand for additional food production, heat stress (HS) is a major concern in the livestock industry across all species. Animals experience HS when exposed to high environmental temperatures outside their thermal neutral zone. The level of the effects can vary due to the length and intensity of HS to which the animal is exposed to. In experiment one, laying hens with access to cooled perches during HS had a lower heterophil to lymphocyte ratio compared to the control hens after 4 h of acute heat stress, …

Competition Between Private Labels And National Brands: Empirical Evidence From Homescan Data On Fluid Milk Markets, Jeffrey S. Young

Open Access Theses

The purpose of this study is to empirically examine the nature of the pricing relationship between private labels (or "store brands") and national brands. To accomplish this, we control for the exogenous variation in the farm price of a commodity that serves as the main agricultural input common to both private labels and national brands (any shocks to this farm price will pass through to both retail prices - private label and retail). The product of choice is fluid milk, as the farm price of milk comprises a large share of producer and retailer cost.

Two examples of underlying theories …

Market Power Estimation In The Chilean Cattle Market, Rodirgo A. Vasquez Panizza

Open Access Theses

The cattle market in Chile is constituted by cattle slaughtering firms and farmers; the industry demands cattle but also demands beef imports. Based in antecedents of market concentration in this sector, I make a system of equations model based on the NEIO approach to determine market power for the period April 1993 - December 2008. The results show that there is no market power in the aggregated market as well as in the disaggregated market by sex and age type, which is explained because the special features of this market in Chile.

Analysis Of Vitamin E Metabolites By Liquid Chromatography-Tandem Mass Spectrometry, Tianlin Xu

Open Access Theses

Naturally occurring forms of Vitamin E are metabolized to various carboxychromanols and conjugated carboxychromanols. Recent studies showed that vitamin E metabolites, especially the long-chain carboxychromanols are more bioactive than unmetabolized vitamin E forms. It is necessary to quantify vitamin E metabolites in biological environment. Here a simple and effective extraction method was developed to achieve extraction efficacy of more than 90% of various forms of vitamin E and metabolites with less than 10% inter- or intra-day variation. An LC-MS/MS assay was developed and optimized to acquire best sensitivity for the detection of vitamin E and metabolites. This method allows simultaneous …

Liquid Swine Manure Application Timing And Instincttm Impacts On Net Soil Nitrogen Mineralization And Corn Yield, Min Xu

Open Access Theses

Nitrogen (N) is one of the most expensive variable input costs for corn production. Optimized manure management is essential to ensure maximum crop N utilization and to reduce the risk of N loss. A field study was conducted in central Indiana from 2011-2013 to assess liquid swine ( Sus scrofa L.) manure N availability when applied at different times or co-applied with InstinctTM , a microencapsulated form of nitrapyrin. Soil inorganic N contents, soil N mineralization, corn yield, grain N content, whole plant N concentrations of corn at the V6 growth stage, and ear leaf N concentrations of corn at …

Adipogenic And Myogenic Stem Cells In Brown Fat: A Study Of Progenitors And Regenerative Capacity, Xin Yang

Open Access Theses

Brown adipose tissue (BAT) utilizes stored lipids to generate heat, therefore reducing body fat content and favoring a leaner body composition. Recent identification of metabolically active BAT in adult humans has sparked broad interests in understanding the developmental origin and postnatal homeostasis of BAT. However, the stem cell population that gives rise to BAT during development and maintains BAT mass at postnatal stage has not been characterized. In addition, whether adult BAT has the capacity to regenerate after injury or to proliferate in response to cold is flargely unknown. Furthermore, although BAT and skeletal muscle are known to share a …

Assessing Positional Accuracy And Correcting Point Data For Digital Soil Mapping At Varying Scales, Minerva J. Dorantes

Open Access Theses

Accuracy, timeliness, and the effect of scale of soil maps are rarely assessed. The recent increase in the use of GIS technologies and modelling software in natural resources and land management, has increased the demand for soil information at a finer resolution worldwide. Most of the world's developing countries rely on soils information at a scale that is too coarse for practical planning, and have obstacles impeding collection of new data, such as civil war and a lack of collection resources. The United States has an exhaustive collection of soils data at a fine scale. However, its location information is …

Vegetation And Soil Characteristics Of Pine Plantations And Naturally Regenerated Hardwood Forests On The Hoosier National Forest, Patrick James Duffy

Open Access Theses

During the 1930s there was widespread erosion on farmland and subsequent land abandonment. As a result, Pinus strobus L. (white pine), P. resinosa Aiton (red pine), and P. echinata Mill. (shortleaf pine) were planted in the Midwest to prevent erosion and rehabilitate sites. These species were selected due to their wide availability at the time. Currently, it is the goal of the U.S. Forest Service to provide a more natural and sustainable landscape, in part by removing these non-native Pinus stands and by replacing them with native hardwood species. The ultimate success of hardwood restoration depends, in part, on the …

Using Energy-Efficient Technologies To Produce Bedding Plants And Microgreens In Protected And Controlled Environments, Joshua R. Gerovac

Open Access Theses

Gerovac, Joshua R. M.S., Purdue University, December 2014. Using Energy-Efficient Technologies to Produce Bedding Plants and Microgreens in Protected and Controlled Environments. Major Professor: Roberto G. Lopez. Production of bedding plants in commercial greenhouses (GHs) located in northern latitudes begins in late winter and continues through late spring when low outdoor temperatures generally necessitate active heating to maintain temperatures suitable for growth and development. Meanwhile, year-round production of microgreens using multi-layer systems requires sole-source (SS) photosynthetic lighting for production. Energy used to provide active heating in commercial GHs or SS lighting in multi-layer systems is second only to labor as …

Uncertainty, Irreversibility, And Investment In Secondgeneration Biofuels, Tanner Joseph Mccarty

Open Access Theses

The present study formalizes and quantifies the importance of uncertainty for investment in a corn-stover based cellulosic biofuel plant. Using a real options model we recover prices of gasoline that would trigger entry into the market and calculate the portion of that entry trigger price required to cover cost and the portion that corresponds to risk premium. We then discuss the effect of managerial flexibility on the entry risk premium and the prices of gasoline that would trigger mothballing, reactivation, and exit. Results show that the risk premium required by plants to enter the second-generation biofuel market is likely to …

Potential Impact Of Neonicotinoid Insecticides On Honey Bees (Apis Mellifera) In Muskmelon Production, Kira L. Nixon

Open Access Theses

Honey bees (Apis mellifera ) provide pollination services to many agricultural crops, including cucurbits. Neonicotinoids are commonly applied to cucurbits where honey bee colonies are often rented for sufficient pollination and proper fruit set. The goals of this study were to determine the potential impact of neonicotinoid residues on honey bees in muskmelon production and to determine the extent and duration of striped cucumber beetle control among treatments. The neonicotinoids evaluated were imidacloprid and its metabolites imidacloprid olefin and 5-hydroxyimidacloprid, thiamethoxam and its metabolite clothianidin, and acetamiprid. Thiamethoxam applied as a FarMore ® seed treatment resulted in a highest …

Effects Of Biomass Harvest On Eastern Red-Backed Salamanders, Patrick J. Ruhl

Open Access Theses

In a typical forest harvest, the volume of coarse woody debris (CWD) increases from nonmerchantable material (i.e., tree-tops, limbs, and small-diameter trees) left on the forest floor. Biomass harvesting removes much of this material for bioenergy production. When removed, ecosystem services associated with CWD, such as seedbed substrate, nutrient cycling, and essential wildlife habitat, is reduced. Woodland salamanders have strict microhabitat and soil moisture requirements that make them especially sensitive to timber harvest practices, particularly those that remove CWD, a primary habitat for the group.

I monitored the abundance of Eastern red-backed salamanders ( Plethodon cinereus ) in response to …