Life Sciences Commons^™

Conservation In The Context Of Climate Change: Practical Guidelines For Land Protection At Local Scales, Kevin Ruddock, Peter August, Christopher Damon, Charles Labash, Pamela Rubinoff, Donald Robadue Jr.

Peter August

Climate change will affect the composition of plant and animal communities in many habitats and geographic settings. This presents a dilemma for conservation programs – will the portfolio of protected lands we now have achieve a goal of conserving biodiversity in the future when the ecological communities occurring within them change? Climate change will significantly alter many plant communities, but the geophysical underpinnings of these landscapes, such as landform, elevation, soil, and geological properties, will largely remain the same. Studies show that extant landscapes with a diversity of geophysical characteristics support diverse plant and animal communities. Therefore, geophysically diverse landscapes …

Geoexes - My Dos Executables - Use At Your Own Risk, George Mcnamara

George McNamara

The downloadable ZIP file contains old Turbo Pascal programs I wrote. These ran in Microscoft DOS and in early Windows (ex. Windows 3.1) DOS shells. They may or may not work in recent (Windows 2000, XP, Vista, 7) cmd or command "shells". No warranty. Use at your own risk. I do not expect to ever program in Turbo Pascal again so if anyone wants to "take over" my old code (and adjust copyirght notices, warnings, etc), please email me. In particular, MATH.exe had 10,000 lines of pascal code in it. Another program is LUTSconv.exe which converted Fractint MAP lookup tables …

Identification Of Disufide Bond Formation Between Mitoneet And Glutamate Dehydrogenase 1, Morgan E. Roberts, Jacquelyn P. Crail, Megan M. Laffoon, William G. Fernandez, Michael A. Menze, Mary E. Konkle

Michael Menze

MitoNEET is a protein that was identified as a drug target for diabetes, but its cellular function as well as its role in diabetes remains elusive. Protein pull-down experiments identified glutamate dehydrogenase 1 (GDH1) as a potential binding partner. GDH1 is a key metabolic enzyme with emerging roles in insulin regulation. MitoNEET forms a covalent complex with GDH1 through disulfide bond formation and acts as an activator. Proteomic analysis identified the specific cysteine residues that participate in the disulfide bond. This is the first report that effectively links mitoNEET to activation of the insulin regulator GDH1.

Differential Habitat Use By Common Watersnakes (Nerodia Sipedon), Lorin A. Neuman-Lee, Andrew M. Durso, Nicholas M. Kiriazis, Melanie J. Olds, Stephen J. Mullin

Stephen J. Mullin

Understanding intraspecific variation in habitat use is important for the management of any species. In many studies of reptiles, habitat use by juveniles is poorly understood when compared to their adult conspecifics because of capture biases and logistical constraints. We compared habitat use between sexes and age classes of Common Watersnakes (Nerodia sipedon) at a reservoir in central Illinois. Juvenile N. sipedon occurred more frequently in habitat with high canopy cover, whereas adult N. sipedon, especially reproductive females, were found exclusively in habitat with no canopy cover. Adult males used both locations equally. We emphasize the need to investigate ontogenetic …

Phosphatidic Acid Interacts With A Myb Transcription Factor And Regulates Its Nuclear Localization And Function In Arabidopsis, Xuemin Wang, Hongyan Yao, Geliang Wang, Liang Guo

Xuemin (Sam) Wang

Stellaris Fishing 20131125mon Part 1 Of 2, George Mcnamara

George McNamara

Stellaris FISH dataset using three FISH probe sets. Slides courtesy of Biosearch Technologies,

https://www.biosearchtech.com/store/product.aspx?catid=224,318,324

see http://stellarisfish.smugmug.com/ for online gallery by Biosearch.

This experiment was to evaluate the crosstalk between the Biosearch fluorophores:

Quasar 570

CAL Fluor Red 610 (CFR 610)

Quasar 670

DAPI (DNA counterstain)

Autofluorescence (green, but sometimes showing up in other channels).

and our lab's Leica DMI6000 fluorescence microscope with Leica filter sets:

DAPI

GFP (L5)

Cy3 (N3)

Texas Red (TxRed2)

Cy5 (Y5)

I also acquired green channel and red channel with exciter filters in our ASI excitation wheel:

GFP + 492 exciter

Texas Red (TxRed2) + 572 …

Stellaris Fishing 20131125mon Part 2 Of 2, George Mcnamara

George McNamara

Stellaris FISH dataset using three FISH probe sets.

Slides courtesy of Biosearch Technologies,

https://www.biosearchtech.com/store/product.aspx?catid=224,318,324

see http://stellarisfish.smugmug.com/ for online gallery by Biosearch.

This experiment was to evaluate the crosstalk between the Biosearch fluorophores:

Quasar 570

CAL Fluor Red 610 (CFR 610)

Quasar 670

DAPI (DNA counterstain)

Autofluorescence (green, but sometimes showing up in other channels).

and our lab's Leica DMI6000 fluorescence microscope with Leica filter sets:

DAPI

GFP (L5)

Cy3 (N3)

Texas Red (TxRed2)

Cy5 (Y5)

I also acquired green channel and red channel with exciter filters in our ASI excitation wheel:

GFP + 492 exciter

Texas Red (TxRed2) + 572 …

Active Α-Macroglobulin Is A Reservoir For Urokinase After Fibrinolytic Therapy In Rabbits With Tetracycline-Induced Pleural Injury And In Human Pleural Fluids, Ali Azghani

Ali Azghani

Monohybrid Mendelian Segregation In An Interspecific Hybrid Population Of Tetraploid X Diploid Coffea Species- Part 2, Anil Kumar, Subbugan Ganesh, Central Coffee Research Institute

Emily Scott

Coffee possesses normal sexual propagation behaviour and exhibits various characters in a large population. The work on the extent of variation is very limited and not well understood. In this context a study was undertaken during 2008-2011 to study the monohybrid segregation pattern in F2 population of C. arabica cv. ‘Cauvery’x (C. congensis x C. canephora var. robusta) established at Coffee Research Sub Station, Chettalli, Kodagu District, Karnataka in the year 2002. The results revealed that coffee varieties grown under Indian conditions possessed dependent and independent characters. The dependent characters followed the independent assortment along with closely associated characters and …

Zebrafish: An In Vivo Model For The Study Of Human Diseases, Bibhas Kar, Sivamani Subbiah

Emily Scott

The zebrafish (Danio rerio) is a powerful model organism for the study of vertebrate biology, being well suited to both developmental and genetic analysis. More recently, the rapid progress of various zebrafish genomics infrastructure initiatives is facilitating the development of zebrafish models of human disease. Genome organization and the pathways involved into control of signal transduction appear to be highly conserved between zebrafish and humans and therefore zebrafish may be used for modeling of human diseases. This review will highlight and describe the utility of zebrafish in the study of human diseases.

Effects Of Natural Flooding And Manual Trapping On The Facilitation Of Invasive Crayfish-Native Amphibian Coexistence In A Semi-Arid Perennial Stream, Lee Kats, Gary Bucciarelli, Thomas Vandergon, Rodney Honeycutt, Evan Mattiasen, Arthur Sanders, Seth Riley, Jacob Kerby, Robert Fisher

Lee Kats

Aquatic amphibians are known to be vulnerable to a myriad of invasive predators. Invasive crayfish are thought to have eliminated native populations of amphibians in some streams in the semi-arid Santa Monica Mountains of southern California. Despite their toxic skin secretions that defend them from native predators, newts are vulnerable to crayfish attacks, and crayfish have been observed attacking adult newts, and eating newt egg masses and larvae. For 15 years, we have observed invasive crayfish and native California newts coexisting in one stream in the Santa Monica Mountains. During that period, we monitored the densities of both crayfish and …

Accounting For False Positive Detection Error Induced By Transient Individuals, Chris Sutherland, D Elston, X. Lambin

Chris Sutherland

Genetic Character Of Cyb5 Gene Among Different Pig Breeds.Pdf, Ying Bai, Jibin Zhang, Meiying Fang

Jibin Zhang

Impact Of Phytoplankton On The Biogeochemical Cycling Of Iron In Subantarctic Waters Southeast Of New Zealand During Fecycle, Robert Michael Mckay, S. W. Wilhelm, J. Hall, D. A. Hutchins, M. M. D. Al-R Shaidat, C. E. Mioni, S. Pickmere, D. Porta, P. W. Boyd

Robert Michael McKay

During austral summer 2003, we tracked a patch of surface water infused with the tracer sulfur hexafluoride, but without addition of Fe, through subantarctic waters over 10 days in order to characterize and quantify algal Fe pools and fluxes to construct a detailed biogeochemical budget. Nutrient profiles characterized this patch as a high-nitrate, low-silicic acid, low-chlorophyll (HNLSiLC) water mass deficient in dissolved Fe. The low Fe condition was confirmed by several approaches: shipboard iron enrichment experiments and physiological indices of Fe deficiency (F(v)/F(m) < 0.25, Ferredoxin Index < 0.2). During FeCycle, picophytoplankton (0.2-2 mu m) and nanophytoplankton (2-20 mu m) each contributed >40% of total chlorophyll. Whereas the picophytoplankton accounted for similar to 50% of total primary production, they …

Role Of Iron, Light, And Silicate In Controlling Algal Biomass In Subantarctic Waters Se Of New Zealand, Robert Michael Mckay, Philip Boyd, Julie Laroche, Mark Gall, Russell Frew

Robert Michael McKay

Phytoplankton processes in subantarctic (SA) waters southeast of New Zealand were studied during austral autumn and spring 1997. Chlorophyll a (0.2–0.3 μg L−1) and primary production (350–650 mg C m−2 d−1) were dominated by cells μm (cyanobacteria) in both seasons. The photochemical efficiency of photosystem II (Fυ/Fm) of cells was low (0.3), indicating physiological stress. Dissolved Fe (DFe) levels in surface waters were subnanomolar, and the molecular marker flavodoxin indicated that cells were iron stressed. In contrast, Subtropical Convergence (STC) and subtropical waters had higher algal biomass/production levels, particularly in spring. In these waters, DFe levels were >1 nmol kg−1, …

Tracking Changes In Bioavailable Fe Within High-Nitrate Low-Chlorophyll Oceanic Waters: A First Estimate Using A Heterotrophic Bacterial Bioreporter, Robert Michael Mckay, C. E. Mioni, S. M. Handy, M. J. Ellwood, M. R. Twiss, P. W. Boyd, S. W. Wilhelm

Robert Michael McKay

It is conventional knowledge that heterotrophic bacteria play a key role in the biogeochemical cycling of oceanic carbon. However, only recently has their role in marine iron ( Fe) biogeochemical cycles been examined. Research during this past decade has demonstrated an inextricable link between Fe chemistry and the biota, as >99% of Fe in marine systems is complexed to organic chelates of unknown but obviously biotic origin. Here we present a novel approach to assess and compare Fe bioavailability in low Fe HNLC waters using a bioluminescent bacterial reporter that quantitatively responds to the concentration of bioavailable Fe by producing …

Effect Of Phosphorus Amendments On Present Day Plankton Communities In Pelagic Lake Erie, Steven W. Wilhelm, Jennifer M. Debruyn, Osnat Gillor, Michael R. Twiss, Kasey Livingston, Richard A. Bourbonniere, Lisa D. Pickell, Charles G. Trick, Amanda L. Dean, Robert Michael Mckay

Robert Michael McKay

To address questions regarding the potential impact of elevated total phosphorus (TP) inputs (due to relaxed regulations of TP loading), a series of TP enrichment experiments were conducted at pelagic stations in the 3 hydrologically distinct basins of Lake Erie. Results of nutrient assimilation measurements and assays for nutrient bioavailability suggest that the chemical speciation, and not concentration, of nitrogenous compounds may influence phytoplankton community structure; this in turn may lead to the selective proliferation of cyanobacteria in the eastern basin of the lake. Assays with cyanobacterial bioluminescent reporter systems for P and N availability as well as N-tot:P-tot assimilation …

Fecycle: Attempting An Iron Biogeochemical Budget From A Mesoscale Sf6 Tracer Experiment In Unperturbed Low Iron Waters, Robert Michael Mckay, P. W. Boyd, C. S. Law, D. A. Hutchins, E. R. Abraham, P. L. Croot, M. Ellwood, R. D. Frew, M. Hadfield, J. Hall, S. Handy, C. Hare, J. Higgins, P. Hill, K. A. Hunter, K. Leblanc, M. T. Maldonado, C. Mioni, M. Oliver, S. Pickmere, M. Pinkerton, K. Safi, S. Sander, S. A. Sanudo-Wilhelmy, M. Smith, R. Strzepek, A. Tovar-Sanchez, S. W. Wilhelm

Robert Michael McKay

An improved knowledge of iron biogeochemistry is needed to better understand key controls on the functioning of high-nitrate low-chlorophyll (HNLC) oceanic regions. Iron budgets for HNLC waters have been constructed using data from disparate sources ranging from laboratory algal cultures to ocean physics. In summer 2003 we conducted FeCycle, a 10-day mesoscale tracer release in HNLC waters SE of New Zealand, and measured concurrently all sources (with the exception of aerosol deposition) to, sinks of iron from, and rates of iron recycling within, the surface mixed layer. A pelagic iron budget (timescale of days) indicated that oceanic supply terms (lateral …

Plasticity Of Total And Intracellular Phosphorus Quotas In Microcystis Aeruginosa Cultures And Lake Erie Algal Assemblages, Robert Michael Mckay, Matthew A. Saxton, Robert J. Arnold, Richard A. Bourbonniere, Steven W. Wilhelm

Robert Michael McKay

Blooms of the potentially toxic cyanobacterium Microcystis are common events globally, and as a result significant resources continue to be dedicated to monitoring and controlling these events. Recent studies have shown that a significant proportion of total cell-associated phosphorus (P) in marine phytoplankton can be surface adsorbed; as a result studies completed to date do not accurately report the P demands of these organisms. In this study we measure the total cell-associated and intracellular P as well as growth rates of two toxic strains of Microcystis aeruginosa Kütz grown under a range of P concentrations. The results show that the …

High-Throughput Imaging Of Neuronal Activity In Caenorhabditis Elegans, Dirk Albrecht, Johannes Larsch, Donovan Ventimiglia, Cornelia Bargmann

Dirk R. Albrecht

Neuronal responses to sensory inputs can vary based on genotype, development, experience, or stochastic factors. Existing neuronal recording techniques examine a single animal at a time, limiting understanding of the variability and range of potential responses. To scale up neuronal recordings, we here describe a system for simultaneous wide-field imaging of neuronal calcium activity from at least 20 Caenorhabditis elegans animals under precise microfluidic chemical stimulation. This increased experimental throughput was used to perform a systematic characterization of chemosensory neuron responses to multiple odors, odor concentrations, and temporal patterns, as well as responses to pharmacological manipulation. The system allowed recordings …

Extraction Of Dna From Plant And Fungus Tissues In Situ, Scott O. Rogers, Amal S. Abu Almakarem, Katie L. Heilman, Heather L. Conger, Yury M. Shtarkman

Scott O. Rogers

Background: When samples are collected in the field and transported to the lab, degradation of the nucleic acids contained in the samples is frequently observed. Immediate extraction and precipitation of the nucleic acids reduces degradation to a minimum, thus preserving accurate sequence information. An extraction method to obtain high quality DNA in field studies is described. Findings. DNA extracted immediately after sampling was compared to DNA extracted after allowing the sampled tissues to air dry at 21°C for 48 or 72 hours. While DNA extracted from fresh tissues exhibited little degradation, DNA extracted from all tissues exposed to 21°C air …

Welcome To The Journal Of Evolution And Health, Aaron Blaisdell, Paul Jaminet, David C. Pendergrass

Aaron P Blaisdell

Welcome to the first issue of the Journal of Evolution and Health! The Journal of Evolution and Health is the peer-reviewed, open-access journal of the Ancestral Health Society, a community of scientists, healthcare professionals, and laypersons who collaborate to understand health challenges from an evolutionary perspective.

Origin And Differential Selection Of Allelic Variation At Tas2r16 Associated With Salicin Bitter Taste Sensitivity In Africa, Michael C. Campbell

Michael C. Campbell

Extensión Y Límites Del Ecosistema Subterráneo, Alberto Sendra, Ana Sofia Reboleira

Ana Sofia P.S. Reboleira

No abstract provided.

Darwin Correspondence Project, Betty Landesman

Betty Landesman

Review of the Darwin Correspondence Project web site, http://www.darwinproject.ac.uk/

Science And Policy On Endocrine Disrupters Must Not Be Mixed: A Reply To A "Common Sense" Intervention By Toxicology Journal Editors, Åke Bergman, Anna-Maria Andersson, Georg Becher, Martin Van Den Berg, Bruce Blumberg, Poul Bjerregaard, Carl-Gustaf Bornehag, Riana Bornman, Ingvar Brandt, Jayne V. Brian, Stephanie C. Casey, Paul A. Fowler, Heloise Frouin, Linda C. Giudice, Taisen Iguchi, Ulla Hass, Susan Jobling, Anders Juul, Karen A. Kidd, Andreas Kortenkamp, Monica Lind, Olwenn V. Martin, Derek Muir, Roseline Ochieng, Nicolas Olea, Leif Norrgren, Erik Ropstad, Peter S. Ross, Christina Rudén, Martin Scheringer, Niels Erik Skakkebaek, Olle Söder, Carlos Sonnenschein, Ana Soto, Shanna Swan, Jorma Toppari, Charles R. Tyler, Laura N. Vandenberg, Anne Marie Vinggaard, Karin Wiberg, R. Thomas Zoeller

R. Thomas Zoeller

The “common sense” intervention by toxicology journal editors regarding proposed European Union endocrine disrupter regulations ignores scientific evidence and well-established principles of chemical risk assessment. In this commentary, endocrine disrupter experts express their concerns about a recently published, and is in our considered opinion inaccurate and factually incorrect, editorial that has appeared in several journals in toxicology. Some of the shortcomings of the editorial are discussed in detail. We call for a better founded scientific debate which may help to overcome a polarisation of views detrimental to reaching a consensus about scientific foundations for endocrine disrupter regulation in the EU.

Conceptual Shifts Needed To Understand The Dynamic Interactions Of Genes, Environment, Epigenetics, Social Processes, And Behavioral Choices, Fatimah Linda Collier Jackson, Mihai D. Niculescu, Robert T. Jackson

Fatimah Linda Collier Jackson

Ecological Literacy: The Educational Foundation Necessary For Informed Public Decision Making, Catherine Cardelús, George Middendorf

George Middendorf

Female Rats Display Enhanced Rewarding Effects Of Ethanol That Are Hormone Dependent, Laura O'Dell

Laura Elena O'Dell

Background: Ethanol (EtOH) abuse is a major health and economic concern, particularly for females who appear to be more sensitive to the rewarding effects of EtOH. This study compared sex differences to the rewarding and aversive effects of EtOH using place-conditioning procedures in rats. Methods: Separate groups of adult (male, female, ovariectomized [OVX] female) and adolescent (male and female) rats received EtOH (0, 0.5, 1.0, 2.0 or 2.5 g/kg; i.p.) and were confined to their initially nonpreferred side of our conditioning apparatus for 30 minutes. On alternate days, they received saline and were confined to the other side. Following 5 …

Biology Of Human Life Laboratory Manual, Lee Lee, Joseph Riggio, Tin-Chun Chu

Tin-Chun Chu, Ph.D.

No abstract provided.