Life Sciences Commons^™

Traversing Swanton Road, 10th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Rapid Invasion Of Indo-Pacific Lionfishes (Pterois Volitans And Pterois Miles) In The Florida Keys, Usa: Evidence From Multiple Pre- And Post-Invasion Data Sets, Benjamin I. Ruttenberg, Pamela J. Schofield, J. Lad Akins, Alejandro Acosta, Michael W. Feeley, Jeremiah Blondeau, Steven G. Smith, Jerald S. Ault

Biological Sciences

Over the past decade, Indo-Pacific lionfishes, Pterois volitans (Linnaeus, 1758) and Pterois miles (Bennett, 1828), venomous members of the scorpionfish family (Scorpaenidae), have invaded and spread throughout much of the tropical and subtropical northwestern Atlantic Ocean and Caribbean Sea. These species are generalist predators of fishes and invertebrates with the potential to disrupt the ecology of the invaded range. Lionfishes have been present in low numbers along the east coast of Florida since the 1980s, but were not reported in the Florida Keys until 2009. We document the appearance and rapid spread of lionfishes in the Florida Keys using multiple …

Dynamics Of An Acute Coral Disease Outbreak Associated With The Macroalgae Dictyota Spp. In Dry Tortugas National Park, Florida, Usa, Marilyn E. Brandt, Benjamin I. Ruttenberg, Rob Waara, Jeff Miller, Brian Witcher, Andrew J. Estep, Matt Patterson

Biological Sciences

Reports of coral disease outbreaks have increased in recent decades, but often few details are known about these outbreaks, such as environmental triggers, associated biological variables, or even the precise temporal span of the outbreak. Here we document an acute outbreak of a rapid tissue loss disease on the highest live coral cover (15%–30%) reefs within Dry Tortugas National Park, Florida, USA. This disease exhibited similar signs to white plague disease with the notable exception that a white film often was observed on the recently denuded skeleton. The temporal span of the disease was short (<2 mo). Partial mortality was recorded but there was no detectable impact to overall coral cover. A significant increase and then decrease in the cover of macroalgae, primarily of the genus Dictyota, occurred simultaneously …

An Experimental Evaluation Of The Use Of C3 Δ13C Plant Tissue As A Proxy For The Paleoatmospheric Δ13Co2 Signature Of Air, B. H. Lomax, C. A. Knight, J. A. Lake

Biological Sciences

Previous work suggests that the relationship between the carbon isotope composition of air (d13Ca) and plant leaf tissue (d13Cp) can be used to track changes in the carbon isotope composition of paleo-atmospheric CO2. Here we test this assertion in a series of experiments using the model plant Arabidopsis thaliana grown under a range of atmospheric CO2 concentrations relevant to geologic time (380, 760, 1000, 1500, 2000 and 3000 ppm). Nested within these CO2 experiments water availability was controlled (giving two sets of experimental plants; low and high water treatment at each CO2 concentration) to manipulate stomatal opening, a key process …

Environmental Stress Proteomics Of Two Blue Mussel (Genus Mytilus) Congeners, Lars Tomanek

Biological Sciences

Abstract of paper presented at the 28th Congress of the New European Society of Comparative Physiology and Biochemistry Proceedings: Bilbao, Spain.

Gene Transcripts Encoding Hypoxia-Inducible Factor (Hif) Exhibit Tissue- And Muscle Fiber Type-Dependent Responses To Hypoxia And Hypercapnic Hypoxia In The Atlantic Blue Crab, Callinectes Sapidus, Kristin M. Hardy, Chandler R. Follett, Louis E. Burnett, Sean Lema

Biological Sciences

Hypoxia inducible factor (HIF) is a transcription factor that under low environmental oxygen regulates the expression of suites of genes involved in metabolism, angiogenesis, erythropoiesis, immune function, and growth. Here, we isolated and sequenced partial cDNAs encoding hif-α and arnt/hif-β from the Atlantic blue crab, Callinectes sapidus, an estuarine species that frequently encounters concurrent hypoxia (low O₂) and hypercapnia (elevated CO₂). We then examined the effects of acute exposure (1 h) to hypoxia (H) and hypercapnic hypoxia (HH) on relative transcript abundance for hif-α and arnt/hif-β in …

Investigation Of The Importance Of Rock Chemistry For Saxicolous Lichen Communities Of The New Idria Serpentinite Mass, San Benito County, California, Usa, Nishanta Rajakaruna, Kerry Knudsen, Alan M. Fryday, Ryan E. O'Dell, Nathaniel S. Pope, Fred C. Olday, Suzie Woolhouse

Biological Sciences

Although several lichen inventories exist for European ultramafic sites, only four surveys of serpentine lichens for North America have been published to date. Of those, only one has been conducted in California. We conducted a survey of saxicolous lichens from ultramafic rocks (including nephrite, partially serpentinized peridotite, and serpentinite) and non-ultramafic rocks (including silica-carbonate, shale, and sandstone) at the New Idria serpentinite mass, San Benito County, California. X-ray Fluorescence Analysis of the rocks from which the lichens were collected revealed significant elemental differences between the ultramafic and non-ultramafic rocks for 26 of the 32 major and trace elements analyzed. We …

Improving The Efficiency Of Homologous Gene Replacement By Disrupting Non-Homologous End Joining Pathway Gene Kusa In The Oleaginous Fungus Mortierella Alpina, Kathleen T. Krueger, Ziyu Dai Dr, Ugur Uzuner, Scott E. Baker Dr

STAR Program Research Presentations

Mortierella alpina , a oleaginous filamentous fungus, is one of industrial fungal strains known for the production of arachidonic acid. It is also of particular interest for hydrocarbon biofuel production since it is able to produce up to 50% of its mass in rich, long-chain polyunsaturated fatty acids [PUFA’s]. In addition to high fatty acid production, M. alpina like many other oleaginous fungi, already have mechanisms for accumulating significant concentrations of hydrophobic compounds making it a naturally equipped candidate to handle potential toxic concentrations of hydrocarbons. To date, three different transformation methods have been established for M. alpina that are …

Nutritional Content Of Rhinoceros Auklet (Cerorhinca Monocerata) Bill Loads, Dustin Taylor, Ron Heintz

STAR Program Research Presentations

Nutritional Content of Rhinoceros Auklet Bill Loads

Dustin E Taylor

Abstract

An adult Rhinoceros Auklet (Cerorhinca monocerata) can only catch and carry a limited amount of prey to their nestlings after a foraging trip. The auklets therefore must maximize their efficiency by bringing back the most proportionally nutritious prey items to their nestlings. The prey carried back to the nesting sites (known as a ‘bill load’) can contain whole fish, as well as parts, most commonly fish heads. This study is aimed to determine whether returning with just heads to the nestlings was proportionally more nutritious than bringing …

Functional Response Of Protected Larval Stage Delta Smelt (Hypomesus Transpacificus), Jorge Ruiz, Lindsay Sullivan, Wim Kimmerer, Joan Lindberg

STAR Program Research Presentations

Delta smelt (Hypomesus transpacificus) is a protected slender-bodied fish endemic to the San Francisco Estuary. Smelt prey upon various zooplankton including the copepods such as Pseudodiaptomus forbesi. This experiment studied the prey maximum feeding rate of 2 larval stages (21 DHP, 35 DPH) of Delta smelt on various concentrations of P. forbesi. The copepod prey was offered at 7 different concentrations (2No./L–120No./L). After feeding was terminated the free prey and ingested prey were counted and analyzed to find the feeding rate of Delta smelt. Maximum feeding rate was found to be at much higher prey densities …

Analyzing Environmental Microbes For Genomic Regions Promoting Ionic Liquid Tolerance In E. Coli, Ann Nguyen, Alison Richins, Thomas Rüegg, Steven Singer, Michael Thelen

STAR Program Research Presentations

Ionic liquids (ILs) are promising as solvents to increase the efficiency of biofuel production; however, ILs are toxic to microbes used in the fermentation of liquid fuels. To engineer IL resistant biofuel hosts, environmental bacteria were screened for tolerance, and these were used to create gene libraries to test in E. coli. Future characterization of these libraries using molecular techniques will be used to identify genes that contribute IL-tolerance to transformed microbes.

Developing Monitoring Methods For Leptasterias Spp. As Sentinel Species In Detecting Local Environmental Changes, Zachary Sturbaum, Kathryn Nuessly, Riley J. Smith, C. Sarah Cohen

STAR Program Research Presentations

Leptasterias spp., a six-rayed sea star, is found in rocky intertidal habitats ranging from Alaska to central California. Leptasterias spp. can be monitored on a broad scale throughout their range by a variety of means using timed counts and random plot censusing in order to detect both large-scale and local-level changes in the environment due to climate change, land-based human activity, or other environmental events. Leptasterias brood their young externally until the embryos grow into fully developed juveniles. These juveniles disperse by crawling away, limiting their dispersal potential. This localized dispersal provides an opportunity to use Leptasterias spp …

How Do Host Sex And Reproductive State Affect Host Preference And Feeding Duration Of Ticks?, Nicholas B. Pollock, Larisa K. Vredevoe, Emily N. Taylor

Biological Sciences

Parasitism is one of the most notable forms of symbiosis in the biological world, with nearly all organisms hosting parasites. In many vertebrates, males have higher ectoparasite burdens than females, especially when testosterone concentrations are elevated. Furthermore, reproductive females may have higher ectoparasite burdens than non-reproductive females. It is possible that testosterone-stimulated behaviors in males and offspring investment by females incur energetic costs that inhibit immune function. If questing ticks can sense host sex or reproductive condition prior to attachment, they could potentially choose hosts with the poorest immune function, thereby leading to improved feeding success and decreased feeding duration. …

Characterization Of A Vibrio Fischeri Aminopeptidase And Evidence For Its Influence On An Early Stage Of Squid Colonization, Pat M. Fidopiastis, Bethany A. Rader, David G. Gerling, Nestor A. Gutierrez, Katherine H. Watkins, Michelle West Frey, Spencer V. Nyholm, Cheryl A. Whistler

Biological Sciences

Vibrio fischeri cells are the sole colonists of a specialized light organ in the mantle cavity of the sepiolid squid Euprymna scolopes. The process begins when the bacteria aggregate in mucus secretions outside the light organ. The cells eventually leave the aggregate, enter the light organ, and encounter a rich supply of peptides. The need to dissociate from mucus and presumably utilize peptides led us to hypothesize that protease activity is integral to the colonization process. Protease activity associated with whole cells of Vibrio fischeri strain ES114 was identified as the product of a putative cell membrane-associated aminopeptidase (PepN). To …

Effects Of Pristane On Growth Of Pink Salmon (Oncorhynchus Gorbuscha), Brielle D. Kemis, Bonita Nelson

STAR Program Research Presentations

Pristane is a naturally occurring hydrocarbon that is generated by copepods in marine ecosystems. Organisms that eat copepods do not readily metabolize pristane, which causes it to accumulate throughout the marine food web. Understanding how pristane affects marine fish is essential because pristane is often used as a bioindicator in lab studies and may be influencing results in those studies. Also, this hydrocarbon may significantly reduce growth of marine fish in the wild. A previous study indicated that pristane is an appetite suppressant and growth retardant in fish. However, the study implemented a feeding regime with unnaturally high levels of …

Size And Weight Changes Of Leatherback Hatchlings Among Emergence Groups, Shane Morales, Kelly Stewart

STAR Program Research Presentations

In ideal leatherback sea turtle nests, all the hatchlings move together as a single group through the sand to leave the nest. Often, though, hatchlings emerge in two separate groups hours or days apart while others remain stuck in the sand where they may die unless they are dug out (excavation). First emergence groups spend the shortest amount of time in the sand while excavated hatchlings spend the longest amount of time in the sand (typically three days longer than first emergence hatchlings). Individuals from each of the separate emergences were weighed and measured (carapace only) in order to compare …

Stressors And Threats To The Flora Of Acadia National Park, Maine: Current Knowledge, Information Gaps, And Future Directions, Tanner B. Harris, Nishanta Rajakaruna, Sarah J. Nelson, Peter D. Vaux

Biological Sciences

Acadia National Park is a center of plant diversity in northeastern North America. The Park's varied habitats and flora are sensitive to a number of natural and anthropogenic perturbations. Stressors such as invasive plants, pest and pathogens, ozone, acidic fog and sulfur deposition, nitrogen deposition, heavy metals, fire and fire suppression, over-browsing, visitor use, hurricanes, and climate change have all had effects on the Park's habitats and plant species at some point and it is unclear how many of these stressors are currently affecting the flora of Acadia National Park. We discuss the botanical diversity of Acadia, assess the natural …

Traversing Swanton Road, 9th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Traversing Swanton Road, 8th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Traversing Swanton Road, 7th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

The Distribution Of 4-Nonylphenol In Marine Organisms Of North American Pacific Coast Estuaries, Jennifer Diehl, Sarah E. Johnson, Kang Xia, Amy West, Lars Tomanek

Biological Sciences

One of the chemical breakdown products of nonylphenol ethoxylates, 4-nonylphenol (4-NP), accumulates in organisms and is of concern as an environmental pollutant due to its endocrine disrupting effects. We measured 4-NP levels in the seawater, sediment, and twelve organisms within the California estuary, Morro Bay, and examined biomagnification of 4-NP using stable isotope abundances (δ¹⁵N and δ¹³C) to quantify trophic position. 4-NP concentrations in organisms from Morro Bay included 25000 ± 8600 ng g⁻¹ lw in liver of California sea lion, 14000 ± 5600 ng g⁻¹ lw in liver of harbor porpoise, 138000 …

Do Thick Leaves Avoid Thermal Damage In Critically Low Wind Speeds?, A. Leigh, S. Sevanto, M. C. Ball, J. D. Close, D. S. Ellsworth, Charles A. Knight, A. B. Nicotra, S. Vogel

Biological Sciences

• Transient lulls in air movement are rarely measured, but can cause leaf temperature to rise rapidly to critical levels. The high heat capacity of thick leaves can damp this rapid change in temperature. However, little is known about the extent to which increased leaf thickness can reduce thermal damage, or how thick leaves would need to be to have biological significance. We evaluated quantitatively the contribution of small increases in leaf thickness to the reduction in thermal damage during critically low wind speeds under desert conditions.

• We employed a numerical model to investigate the effect of thickness relative …

Ecosystem Service Tradeoff Analysis Reveals The Value Of Marine Spatial Planning For Multiple Ocean Uses, Crow White, Benjamin S. Halpern, Carrie V. Kappel

Biological Sciences

Marine spatial planning (MSP) is an emerging responsibility of resource managers around the United States and elsewhere. A key proposed advantage of MSP is that it makes tradeoffs in resource use and sector (stakeholder group) values explicit, but doing so requires tools to assess tradeoffs. We extended tradeoff analyses from economics to simultaneously assess multiple ecosystem services and the values they provide to sectors using a robust, quantitative, and transparent framework. We used the framework to assess potential conflicts among offshore wind energy, commercial fishing, and whale-watching sectors in Massachusetts and identify and quantify the value from choosing optimal wind …

Science & The Senses: Perceptions & Deceptions, William D. Stansfield

Biological Sciences

Science requires the acquisition and analysis of empirical (sense-derived) data. Given the same physical objects or phenomena, the sense organs of all people do not respond equally to these stimuli, nor do their minds interpret sensory signals identically. Therefore, teachers should develop lectures on human sensory systems that include some common examples of sensory limitations, variations, deficiencies, malfunctions, and diseases (as discussed herein) because they have important implications for conducting scientific investigations, science education, and introspection that are seldom included in biology textbooks. Students need to be made aware of the human tendency to self deception in order to avoid …

Fishing Top Predators Indirectly Affects Condition And Reproduction In A Reef-Fish Community, S.M. Walsh, S.L. Hamilton, Bi. Ruttenberg, M.K. Donovan, S.A. Sandin

Biological Sciences

To examine the indirect effects of fishing on energy allocation in non-target prey species, condition and reproductive potential were measured for five representative species (two-spot red snapper Lutjanus bohar, arc-eye hawkfish Paracirrhites arcatus, blackbar devil Plectroglyphidodon dickii, bicolour chromis Chromis margaritifer and whitecheek surgeonfish Acanthurus nigricans) from three reef-fish communities with different levels of fishing and predator abundance in the northern Line Islands, central Pacific Ocean. Predator abundance differed by five to seven-fold among islands, and despite no clear differences in prey abundance, differences in prey condition and reproductive potential among islands were found. Body condition …

Dobzhansky's Dictum: An Object Lesson For Critical Thinking, William D. Stansfield

Biological Sciences

A creationist has called Dobzhansky's dictum a myth. Discussion of this debate could be used as an object lesson for critical thinking.

Spontaneous Multiscale Phase Separation Within Fluorinated Xerogel Coatings For Fouling-Release Surfaces, Anastasiya Sokolova, Joseph J. Bailey, Grant T. Waltz, Lenora H. Brewer, John A. Finlay, Jill Fornalik, Dean Wendt, Maureen E. Callow, James A. Callow, Frank V. Bright, Michael R. Detty

Biological Sciences

Four-component xerogel films consisting of 1 mole-% n-octadecyltrimethoxysilane (C18) and 50 mole-% tetraethoxysilane (TEOS) in combination with 1–24 mole-% tridecafluoro-1,1,2,2-tetrahydrooctyltriethoxysilane (TDF) and 25–48 mole-% n-octyltriethoxysilane (C8) and a 1:49:50 mole-% C18/TDF/TEOS were prepared. Settlement of barnacle cyprids and removal of juvenile barnacles, settlement of zoospores of the alga Ulva linza, and strength of attachment of 7-day sporelings (young plants) of Ulva were compared amongst the xerogel formulations. Several of the xerogel formulations were comparable to poly(dimethylsiloxane) elastomer with respect to removal of juvenile barnacles and removal of sporeling biomass. The 1:4:45:50 and 1:14:35:50 C18/TDF/C8/TEOS xerogels displayed some phase …

Evaluation Of Bio-Optical Inversion Of Spectral Irradiance Measured From An Autonomous Underwater Vehicle, Mark A. Moline, Ian Robbins, Brian Zelenke, W. Scott Pegau, Hemantha Wijesekera

Biological Sciences

Autonomous underwater vehicles (AUVs) can map water conditions at high spatial (horizontal and vertical) and temporal resolution, including under cloudy conditions when satellite and airborne remote sensing are not feasible. As part of the RADYO program, we deployed a passive radiometer on an AUV in the Santa Barbara Channel and off the coast of Hawaii to apply existing bio-optical algorithms for characterizing the optical constituents of coastal seawater (i.e., dissolved organic material, algal biomass, and other particles). The spectral differences between attenuation coefficients were computed from ratios of downwelling irradiance measured at depth and used to provide estimates of the …

Can Vertical Migrations Of Dinoflagellates Explain Observed Bioluminescence Patterns During An Upwelling Event In Monterey Bay, California?, Igor Shulman, Bradley Penta, Mark A. Moline, Steven H.D. Haddock, Stephanie Anderson, Matthew J. Oliver, Peter Sakalaukus

Biological Sciences

Extensive AUVs surveys showed that during the development of upwelling, bioluminescent dinoflagellates from the northern part of the Monterey Bay, California (called the upwelling shadow area), were able to avoid advection by southward flowing currents along the entrance to the Bay, while non-bioluminescent phytoplankton were advected by currents. It is known that vertical swimming of dinoflagellates to deeper layers helps them avoid losses due to advection. In the present paper, we investigate if modeling dinoflagellates’ vertical swimming can explain the observed dinoflagellates’ ability to avoid advection during the upwelling development. The dynamics of a dinoflagellate population is modeled with the …

Experimentally Altered Navigational Demands Induce Changes In The Cortical Forebrain Of Free-Ranging Northern Pacific Rattlesnakes (Crotalus O. Oreganus), Matthew L. Holding, Julius A. Frazier, Emily N. Taylor, Christine R. Strand

Biological Sciences

The hippocampus of birds and mammals plays a crucial role in spatial memory and navigation. The hippocampus exhibits plasticity in adulthood in response to diverse environmental factors associated with spatial demands placed on an animal. The medial and dorsal cortices of the telencephalon of squamate reptiles have been implicated as functional homologues to the hippocampus. This study sought to experimentally manipulate the navigational demands placed on free-ranging northern Pacific rattlesnakes (Crotalus o. oreganus) to provide direct evidence of the relationship between spatial demands and neuroplasticity in the cortical telencephalon of the squamate brain. Adult male rattlesnakes were radio-tracked for 2 …