Life Sciences Commons^™

Emergent Behavior In A Coupled Economic And Coastline Model For Beach Nourishment, Eli D. Lazarus, D E. Mcnamara, M D. Smith, S Gopalakrishnan, A B. Murray

Publications

Developed coastal areas often exhibit a strong systemic coupling between shoreline dynamics and economic dynamics. "Beach nourishment", a common erosion-control practice, involves mechanically depositing sediment from outside the local littoral system onto an actively eroding shoreline to alter shoreline morphology. Natural sediment-transport processes quickly rework the newly engineered beach, causing further changes to the shoreline that in turn affect subsequent beach-nourishment decisions. To the limited extent that this landscape/economic coupling has been considered, evidence suggests that towns tend to employ spatially myopic economic strategies under which individual towns make isolated decisions that do not account for their neighbors. What happens …

Benthic Habitat Characterization For The South Florida Ocean Measurement Facility (Sfomf), David S. Gilliam, Brian K. Walker

Marine & Environmental Sciences Faculty Reports

This report summarizes the distribution and relative abundance of two stony coral species (Acropora cervicornis and Acropora palmata) currently listed as threatened under the US Endangered Species Act (ESA) (Federal Register/Vol. 71, No. 129/Thursday, July 6, 2006 / Rules and Regulations, http://www.gpo.gov/fdsys/pkg/FR-2006-07-06/pdf/06-6017.pdf) and seven additional stony coral species which have been petitioned for listing as endangered or threatened under the ESA (Agaricia lamarcki, Dendrogyra cylindrus, Dichocoenia stokesii, Montastraea annularis, Montastraea faveolata, Montastraea franksi, and Mycetophyllia ferox) (Federal Register/Vol. 75, No. 27/Wednesday, February 10, 2010/Proposed Rules, http://www.nmfs.noaa.gov/pr/pdfs/fr/fr75-6616.pdf). This report also summarizes the abundance and distribution …

Environmental Influences On Juvenile Fish Abundances In A River-Dominated Coastal System, Laure Carassou, Brian Dzwonkowski, Frank J. Hernandez, Jr., Sean P. Powers, William M. Graham, Kyeong Park, John Mareska

University Faculty and Staff Publications

We investigated the influence of climatic and environmental factors on variations in juvenile abundances of marine fishes in a river-dominated coastal system of the north-central Gulf of Mexico, where an elevated primary productivity sustains fisheries of high economic importance. Fish were collected monthly with an otter trawl at three stations near Mobile Bay from 1982 to 2007. Fish sizes were used to isolate juvenile stages within the data set, and monthly patterns in juvenile fish abundance and size were then used to identify seasonal peaks for each species. The average numbers of juvenile fish collected during these seasonal peaks in …

Restoring Salt Marsh And Functions To Newly Acquired Shoreline In North Mill Pond, Portsmouth, David M. Burdick

PREP Reports & Publications

A berm of construction debris used to fill salt marsh and steepen the shoreline along North Mill Pond many decades ago was removed in 2010 after the land was deeded to the City. Removal of the berm reestablished regular tidal flooding to over 2,400 ft2 of tidal marsh. From 2009 to 2011, the fifth grade classes at New Franklin School learned about the project and planted mussels, shrubs and marsh plants at the site. Plant survival was excellent in the low marsh (94%) and good in the high marsh (77%). By September 2011 (Year Two) plant cover increased to 42% …

Assessment Of Oyster Reefs In Lynnhaven River As A Chesapeake Bay Tmdl Best Management Practice, Mac Sisson, M. Lisa Kellogg, Mark Luckenbach, Rom Lipcius, Allison Colden, Jeff Cornwell, Michael Owens

Reports

No abstract provided.

Invasive Species Management And Buffer Outreach On Goss Farm, Rye, Nh, Rockingham County Conservation District

PREP Reports & Publications

The Goss Farm was permanently protected in November of 2010 with assistance from the USDA, Natural Resources Conservation Service Farm and Ranch Lands Protection Program (FRPP) and is located directly adjacent to the Awcomin Salt Marsh, in Rye, New Hampshire. The Town of Rye Conservation Commission owns the land, and the RCCD holds the conservation easement on the property. The Piscataqua Region Estuaries Partnership (PREP) provided $9,930 in funding assistance to support the Rockingham County Conservation District in its partnership capacity with the Rye Conservation Commission and other natural resource agencies to complete outreach, to plan and complete integrated pest …

A Comprehensive Method For Fractionating Soil Organic Matter Not Protected And Protected From Decomposition By Physical And Chemical Mechanisms, César Plaza, José M. Fernández, Engil Isadora Pujol Pereira, Alfredo Polo

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The objective of this work was to describe a method for isolating meaningful and measurable soil organic matter (SOM) pools that differ in the mechanisms by which they are protected from decomposition. The proposed method is appropriate for soil C stabilization and sequestration studies. Unlike previous fractionation schemes, this procedure allows free SOM located between aggregates (unprotected C pool) and SOM occluded within both macroaggregates and microaggregates (C weakly and strongly protected by physical mechanisms, respectively) to be recovered separately, freed from the soil mineral matrix and the mineral-associated SOM pool (C pool protected by chemical mechanisms) and thus well …

Protecting A Portion Of The Beaver Dam Heath Conservation Focus Area And Initiating Innovative Conservation Financing In Berwick, Maine, Great Works Regional Land Trust

PREP Reports & Publications

This project permanently protected 28 acres in the Beaver Dam Heath Conservation Focus Area through a bargain sale of the fee simple interest. The Grants Meadow III parcel is 85% wetland. The remainder of the upland lies along Diamond Hill Road with adequate frontage for 2-3 house lots. This project involved outreach to the Town of Berwick for project funding to match the PREP funding awarded. GWRLT also received NAWCA funds to complete the project.

Promoting Land Conservation In The Coastal Watershed Through Local Faces, Special Places, Brian Hart

PREP Reports & Publications

The Piscataqua Region Estuaries Partnership provided nearly $3,300.00 to support the Southeast Land Trust of New Hampshire’s (SELTNH) promotion of donated conservation easements in the coastal watershed of Rockingham County. The Southeast Land Trust produced three short web-friendly videos, explaining land conservation from the perspective of a tree farmer, vineyard owner, and a community leader. In addition, the Land Trust hosted two workshops in Kingston and Epping for landowners interested in learning more about the tax and financial benefits of land conservation. Workshop invitations were mailed to more than 1,200 current use landowners within the region. Twenty-two landowners attended the …

Development Of Gene Expression Markers Of Acute Heat-Light Stress In Reef-Building Corals Of The Genus Porites, Carly D. Kenkel, Galina Aglyamova, Ada Alamaru, Ranjeet Bhagooli, Roxana Capper, Ross Cunning, Amanda Devillers, Joshua A. Haslun, Laetitia Hédouin, Shashank Keshavmurthy, Kristin Kuehl, Huda Mahmoud, Elizabeth S. Mcginty, Phanor H. Montoya-Maya, Caroline V. Palmer, Raffaella Pantile, Juan A. Sánchez, Tom Schils, Rachel N. Silverstein, Logan B. Squiers, Pei-Ciao Tang, Tamar L. Goulet, Mikhail V. Matz

Department of Biological Sciences

Coral reefs are declining worldwide due to increased incidence of climate-induced coral bleaching, which will have widespread biodiversity and economic impacts. A simple method to measure the sub-bleaching level of heat-light stress experienced by corals would greatly inform reef management practices by making it possible to assess the distribution of bleaching risks among individual reef sites. Gene expression analysis based on quantitative PCR (qPCR) can be used as a diagnostic tool to determine coral condition in situ. We evaluated the expression of 13 candidate genes during heat-light stress in a common Caribbean coral Porites astreoides, and observed strong …

Potential Impacts Of The Deepwater Horizon Oil Spill On Large Pelagic Fishes, Sarah Frias-Torres, Charles R. Bostater

Ocean Engineering and Marine Sciences Faculty Publications

Biogeographical analyses provide insights on how the Deepwater Horizon oil spill impacted large pelagic fishes. We georeferenced historical ichthyoplankton surveys and published literature to map the spawning and larval areas of bluefin tuna, swordfish, blue marlin and whale shark sightings in the Gulf of Mexico with daily satellite-derived images detecting surface oil. The oil spill covered critical areas used by large pelagic fishes. Surface oil was detected in 100% of the northernmost whale shark sightings, in 32.8 % of the bluefin tuna spawning area and 38 % of the blue marlin larval area. No surface oil was detected in the …

The Lobster Bulletin, Fall 2011, Lobster Institute, University Of Maine

Lobster Bulletin

The Lobster Bulletin newsletter includes research updates, and information on lobsters and the lobster industry. The Lobster Institute at the University of Maine is dedicated to protecting and conserving the lobster resource, and enhancing lobstering as an industry and a way of life.

Headlines in the Fall 2011 issue include:

• Lobster Institute to Present Two Workshops at the Massachusetts Lobstermen's Association Weekend
• Number of Right Whales Up in Bay of Fundy
• Coming 2012 The Lobster Institute's 25th Anniversary
• A Full House for the Lobster Institute's Holiday Lobster & Wine Fest
• Research Report: Squid Outweighs Lobster in Rhode Island Fishery
• Research …

Particle Association Of Enterococcus And Total Bacteria In The Lower Hudson River Estuary, Usa, Elizabeth A. Suter, Andrew R. Juhl, Gegory D. O'Mullan

Faculty Works: Biology, Chemistry, and Environmental Studies

Bacterial particle association has important consequences for water-quality monitoring and modeling. Parti-cle association can change vertical and horizontal transport of bacterial cells, as well as patterns of persis-tence and production. In this study, the abundance and particle association of total bacteria and the fe-cal-indicator, Enterococcus, were quantified between June and October 2008 in the lower Hudson River Es-tuary (HRE). Twelve sites were sampled, including mid-channel, near shore, and tributary habitats, plus a sewage outfall. Total bacterial cell counts averaged 9.2 × 109 ± 6.4 × 109 cell·l–1 (1 standard deviation), com-parable to previous sampling in the HRE. Unlike earlier studies, …

Developing 2010 Impervious Surface Estimates For The Piscataque Region Estuaries Partnership Towns, David G. Justice, Fay A. Rubin

PREP Reports & Publications

Estimates of impervious surface acreage for 2010 were generated for the 59-town region covered by the Piscataqua Region Estuaries Partnership (PREP). The project extended previous work done in the region for the years 1990, 2000, and 2005 and relied on the same satellite-based data sources and image processing methodologies. As a result, standardized impervious surface estimates are now available for a 20-year time period in the PREP region. The current project mapped impervious surfaces (buildings, pavement, etc.) based on a Landsat 5 Thematic Mapper (TM) image acquired on April 24, 2010. Processing used both traditional and sub-pixel image classification techniques, …

Green Marine Construction, Sylvain Pioch, Kirk Kilfoyle, Harold Levrel, Richard E. Spieler

Marine & Environmental Sciences Faculty Articles

The oceans incorporate three-quarters of the Earth's surface, and most of humanity lives in coastal regions. For example, more than half of the total U.S. population presently lives in coastal areas, and the coastal population is projected to increase by 7 million between now and 2015. Similar projections can be made for other developed countries many of which depend on the coastal zone as a major source of tourism-related income. The long-term ecological health and sustainability of the marine and coastal environments are obviously at risk. Coastal projects such as beach re-nourishment, housing developments, and pipe-line, harbor and marina construction …

Exploring Marine Conservation Efforts In Tasmania: An Internship With Ocean Planet, Lauren Markram

Independent Study Project (ISP) Collection

I chose to conduct a dual internship with Environment Tasmania and Ocean Planet. Although I was located in the ET office and conducted participant observation within that environment, I specifically worked on the Ocean Planet campaign to promote marine conservation efforts throughout Tasmania. I was drawn to this internship because the oceans are often disregarded within the environmental movement despite the fact that they are the key to life on earth and are in a degraded state. Further, Tasmania’s marine environment is utterly unique, with ninety percent of its marine life found nowhere else on earth. Despite the magnificent biodiversity …

Present Limits To Heat-Adaptability In Corals And Population-Level Responses To Climate Extremes, Bernhard Riegl, Samuel J. Purkis, Ashraf S. Al-Cibahy, Mohammed A. Abdel-Moati, Ove Hoegh-Guldberg

Marine & Environmental Sciences Faculty Articles

Climate change scenarios suggest an increase in tropical ocean temperature by 1–3°C by 2099, potentially killing many coral reefs. But Arabian/Persian Gulf corals already exist in this future thermal environment predicted for most tropical reefs and survived severe bleaching in 2010, one of the hottest years on record. Exposure to 33–35°C was on average twice as long as in non-bleaching years. Gulf corals bleached after exposure to temperatures above 34°C for a total of 8 weeks of which 3 weeks were above 35°C. This is more heat than any other corals can survive, providing an insight into the present limits …

Shellfish Tissue Monitoring In Piscataqua Region Estuaries 2010: Final Report, Matthew A. Wood, Philip R. Trowbridge

PREP Reports & Publications

Gulfwatch examines the effects of decades of development and industrialization on the water quality of the Gulf as it relates to human health primarily through assessing contaminant exposure of marine organisms. Gulfwatch scientists collect blue mussels at over 60 US and Canadian sites Gulfwide, and analyze the organisms’ tissue for potentially harmful levels and concentrations of toxins including heavy metals, chlorinated pesticides, polychlorinated biphenyls (PCBs), and polycyclic aromatic hydrocarbons (PAHs). New Hampshire increased the number of Gulfwatch sampling locations from two sites per year in 1997 to an average of five sites per year from 1998-2010. The increased spatial coverage …

Development Of Guidelines For Using Bioextraction Technologies To Manage Nutrients In New Hampshire's Estuarine Waters, Raymond E. Grizzle

PREP Reports & Publications

There is growing literature on bioextraction approaches to managing nutrients in coastal waters, and it includes studies using a variety of species. Bivalve mollusks and macroalgae have received the most attention for several reasons, but perhaps foremost because of their aquaculture potential. A December 2009 workshop at the University of Connecticut, which included speakers from several countries, indicated overall that although bioextraction approaches hold substantial potential there are still many unanswered questions. The present review takes a “what we know/what we need to know” perspective, and focuses on aquaculture. For some taxa (e.g., eastern oyster), wild populations occur in New …

Human Pathogen Shown To Cause Disease In The Threatened Elkhorn Coral Acropora Palmata, Kathryn Patterson Sutherland, Sameera Shaban, Jessica L. Joyner, James W. Porter, Erin K. Lipp

Faculty Publications

Coral reefs are in severe decline. Infections by the human pathogen Serratia marcescens have contributed to precipitous losses in the common Caribbean elkhorn coral, Acropora palmata, culminating in its listing under the United States Endangered Species Act. During a 2003 outbreak of this coral disease, called acroporid serratiosis (APS), a unique strain of the pathogen, Serratia marcescens strain PDR60, was identified from diseased A. palmata, human wastewater, the non-host coral Siderastrea siderea and the corallivorous snail Coralliophila abbreviata. In order to examine humans as a source and other marine invertebrates as vectors and/or reservoirs of the APS pathogen, challenge experiments …

Severe 2010 Cold-Water Event Caused Unprecedented Mortality To Corals Of The Florida Reef Tract And Reversed Previous Survivorship Patterns, Diego Lirman, Stephanie Schopmeyer, Derek Manzello, Lewis J. Gramer, William F. Precht, Frank E. Muller-Karger, Kenneth Banks, Brian Barnes, Erich Bartels, Amanda Bourque, James Byrne, Scott Donahue, Janice Duquesnel, Louis Fisher, David S. Gilliam, James C. Hendee, Meaghan E. Johnson, Kerry Maxwell, Erin Mcdevitt, Jamie Monty, Digna Rueda, Rob Ruzicka, Sara Thanner

Marine & Environmental Sciences Faculty Articles

Background

Coral reefs are facing increasing pressure from natural and anthropogenic stressors that have already caused significant worldwide declines. In January 2010, coral reefs of Florida, United States, were impacted by an extreme cold-water anomaly that exposed corals to temperatures well below their reported thresholds (16°C), causing rapid coral mortality unprecedented in spatial extent and severity.

Methodology/Principal Findings

Reef surveys were conducted from Martin County to the Lower Florida Keys within weeks of the anomaly. The impacts recorded were catastrophic and exceeded those of any previous disturbances in the region. Coral mortality patterns were directly correlated to in-situ and satellite-derived …

Photodissolution Of Sedimentary Organic Matter, Lawrence M. Mayer

University of Maine Office of Research Administration: Grant Reports

The field of marine photochemistry has previously focused on dissolved organic matter and trace metals. However, recent studies have shown that sediment suspensions in the ocean are also affected by sunlight and have the potential to dissolve most of their particulate organic carbon to the dissolved organic phase.

A researcher from the University of Maine will determine the importance of photodissolution in the coastal Louisiana area, where riverine particulates are quickly deposited in shallow waters. Optical properties of the particulates will be examined to assess the photon fluxes and to determine the quantum yields of this photodissolution reaction. To determine …

Application Of A Gene-Based Population Dynamics Model To The Optimal Egg Size Problem: Why Do Bivalve Planktotrophic Eggs Vary In Size?, Eric N. Powell, Jason Morson, John M. Klinck

CCPO Publications

The presumption is that egg quality influences larval survival and that egg size influences egg quality. Thus, larger eggs should be favored by selection. Counterweighing the tendency for egg size to increase is the number of eggs that can be produced if egg size remains small. We examine how egg size and egg number counterbalance in Crassostrea oysters, resulting in an average egg size near 50 mu m. Simulations imposing a diversity of ranges in larval survivorship-from little advantage for large eggs relative to small eggs to a great advantage-yield some anticipated outcomes in which genotypes generating larger eggs are …

Boynton-Delray Coastal Water Quality Monitoring Program, Thomas P. Carsey, Charles M. Featherstone, Kelly D. Goodwin, Christopher D. Sinigalliano, S. Jack Stamates, Jia-Zhong Zhang, John Proni, Joseph R. Bishop, Cheryl J. Brown, Madeleine M. Adler, Patricia Blackwelder, Husain Alsayegh

Marine & Environmental Sciences Faculty Reports

This report discusses a sequence of six cruises in the vicinity of the Boynton-Delray (South Central) treated-wastewater plant outfall plume (26°27'43"N, 80°2'32"W), the Boynton Inlet (26°32'43"N, 80°2'30"W), and the Lake Worth Lagoon, Palm Beach County, Florida. The sampling cruises took place on June 5-6, 2007; August 28-29, 2007; October 18-19, 2007; February 14 and 18, 2008; May 19-20, 2008; and July 11-13, 2008. Water was sampled at 18 locations at the surface, middle, and near the seafloor (where there was sufficient depth) for a total of 45 samples; these samples were analyzed for a variety of nutrients and related parameters. …

The Role Of Crassostrea Virginica Hemocytes In Shell Formation: Ex Vivo Mineral Deposition By Cultured Hemocytes, Emily A. Untener, Douglas C. Hansen, Karolyn Hansen

Biology Faculty Publications

Abstract of Technical Paper Presented at the 103rd Annual Meeting National Shellfisheries Association Baltimore, Maryland March 27–31, 2011

Toward An Understanding Of The Molecular Mechanisms Of Barnacle Larval Settlement: A Comparative Transcriptomic Approach, Zhang-Fan Chen, Kiyotaka Matsumura, Hao Wang, Shawn M. Arellano, Xingcheng Yan, Intikhab Alam, John A.C. Archer, Vladimir B. Bajic, Pei-Yuan Qian

Shannon Point Marine Center Faculty Publications

Background: The barnacle Balanus amphitrite is a globally distributed biofouler and a model species in intertidal ecology and larval settlement studies. However, a lack of genomic information has hindered the comprehensive elucidation of the molecular mechanisms coordinating its larval settlement. The pyrosequencing-based transcriptomic approach is thought to be useful to identify key molecular changes during larval settlement.

Methodology and Principal Findings: Using 454 pyrosequencing, we collected totally 630,845 reads including 215,308 from the larval stages and 415,537 from the adults; 23,451 contigs were generated while 77,785 remained as singletons. We annotated 31,720 of the 92,322 predicted open reading frames, which …

The Lobster Bulletin, Summer 2011, Lobster Institute, University Of Maine

Lobster Bulletin

The Lobster Bulletin newsletter includes research updates, and information on lobsters and the lobster industry. The Lobster Institute at the University of Maine is dedicated to protecting and conserving the lobster resource, and enhancing lobstering as an industry and a way of life.

Headlines in the Summer 2011 issue include:

• Lobster Institute Cooperating Experts Directory a Valuable Asset
• Atlantic Lobster Sustainability Foundation Hosts First Lobster Science Symposium
• Research Report: Using the Invasive Green Crab in Food Product Development
• Research Report: Progress in the war against sea lice
• Maine Lobster Chef of the Year Finalists to Compete in Portland

A Molecular Assessment Of Speciation And Evolutionary History Of The Globally Distributed Spotted Eagle Ray (Aetobatus Narinari), Vincent P. Richards, Marcy Henning, Wayne Witzell, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The spotted eagle ray (Aetobatus narinari), a species of conservation concern (Near Threatened IUCN category) is commonly associated with coral reef ecosystems worldwide where it is likely to play an important predatory role. Currently described as a single, circumglobally distributed species, geographic differences in parasite diversity have led to suggestions that A. narinari may constitute a species complex. There has been no systematic evidence to support this suggestion, however. If multiple species of spotted eagle ray exist, each will likely posses decreased geographic ranges and population sizes, altering the impacts of threats and requiring separate assessments of conservation …

Bridging The Marine–Terrestrial Disconnect To Improve Marine Coastal Zone Science And Management, Benjamin I. Ruttenberg, Elise F. Granek

Environmental Science and Management Faculty Publications and Presentations

Coastal zone ecosystems sit between larger terrestrial and marine environments and, therefore, are strongly affected by processes occurring in both systems. Marine coastal zone systems provide a range of benefits to humans, and yet many have been significantly degraded as a result of direct and indirect human impacts. Management efforts have been hampered by disconnects both between management and scientific research and across linked marine–terrestrial systems. Management jurisdictions often start or end at the shoreline, and multiple agencies at different levels of government often have overlapping or conflicting management goals or priorities, or suffer from a lack of knowledge or …

Rna Interference In Marine And Freshwater Sponges: Actin Knockdown In Tethya Wilhelma And Ephydatia Muelleri By Ingested Dsrna Expressing Bacteria, Ajna S. Rivera, April L. Hill, Et. Al.

Biology Faculty Publications

Background: The marine sponge Tethya wilhelma and the freshwater sponge Ephydatia muelleri are emerging model organisms to study evolution, gene regulation, development, and physiology in non-bilaterian animal systems. Thus far, functional methods (i.e., loss or gain of function) for these organisms have not been available.

Results: We show that soaking developing freshwater sponges in double-stranded RNA and/or feeding marine and freshwater sponges bacteria expressing double-stranded RNA can lead to RNA interference and reduction of targeted transcript levels. These methods, first utilized in C. elegans, have been adapted for the development and feeding style of easily cultured marine and freshwater poriferans. …