Life Sciences Commons^™

The Evolutionary Dynamics Of The Lion Panthera Leo Revealed By Host And Viral Population Genomics, Agostinho Antunes, Jennifer L. Troyer, Melody E. Roelke, Jill Pecon-Slattery, Craig Packer, Christiaan Winterbach, Graham Hemson, Laurence G. Frank, Philip Stander, Ludwig Siefert, Margaret Driciru, Paul J. Funston, Kathy A. Alexander, Katherine C. Prager, Gus Mills, David E. Wildt, Mitch E. Bush, Stephen J. O'Brien, Warren E. Johnson

Biology Faculty Articles

The lion Panthera leo is one of the world's most charismatic carnivores and is one of Africa's key predators. Here, we used a large dataset from 357 lions comprehending 1.13 megabases of sequence data and genotypes from 22 microsatellite loci to characterize its recent evolutionary history. Patterns of molecular genetic variation in multiple maternal (mtDNA), paternal (Y-chromosome), and biparental nuclear (nDNA) genetic markers were compared with patterns of sequence and subtype variation of the lion feline immunodeficiency virus (FIV_Ple), a lentivirus analogous to human immunodeficiency virus (HIV). In spite of the ability of lions to disperse long distances, …

Spots Of Adult Male Red-Spotted Newts Are Redder And Brighter Than In Females: Evidence For A Role In Mate Selection?, Andrew K. Davis, Kristine L. Grayson

Biology Faculty Publications

As aquatic adults, eastern red-spotted newts (Notophthalmus v. viridescens) are generally green with two rows of dorsal spots, which vary in number between individuals and range in colour from orange to red. The function of these spots is unknown, but it is possible that they serve as sexual ornamentations and we examined this hypothesis by testing for sexual dimorphism in spot characteristics. We used an image analysis approach that has been used previously with this and other amphibian species to compare the number, size and colour – redness (hue score) and brightness – of spots in 100 male …

Traversing Swanton Road, 1st Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Endangered Species Bulletin – Fall 2008, Volume 33, No. 3

Endangered Species Bulletin

Table of Contents:
Family Ties
A Natural Connection: USGS and Endangered Species Research
Recovering Endemic Plants of the Channel Islands
Conserving Bird Communities in the Sagebrush Sea
Ice, Climate Change, and Wildlife Research in Alaska
Bringing Back the Bonytail and the Razorback
The California Clapper Rail and Multispecies Recovery Planning
Tracking Sea Turtles in the Everglades
Hair Samples Shed Light on Grizzly Bears
Understanding Pallid Sturgeon in the Big Muddy
Surveys Reveal Decline of the Palila
How Temperature Affects Juvenile Coho Salmon
Bridging the Information Gap for Mussels
Neosho Madtom: A Small Fish with Complex Problems
Invasive Plants and Pollinator …

The Prairie Naturalist. Volume 40, No. 3/4 September/December 2008, The Great Plains Natural Science Society

The Prairie Naturalist

WINTERKILL AND BIOMASS OF THE PAINTED TURTLE IN A SOUTH DAKOTA WETLAND. S. G. Platt, Z. Fast Horse, W. Cross, S. Mannel, and T. R. Rainwater

NON-BLACKBIRD AVIAN OCCURRENCE AND ABUNDANCE IN NORTH DAKOTA SUNFLOWER FIELDS. O. A. Schaaf, G. M. Linz, C. Ooetkott, M. W. Lutman, and W. J. Bleier

USING LOCAL KNOWLEDGE AND REMOTE SENSING TO MAP KNOWN AND POTENTIAL PRAIRIE-CHICKEN DISTRIBUTION IN KANSAS. M. E. Houts, R. O. Rodgers, R. D. Applegate, and W. H. Busby

A CASE STUDY OF A SUCCESSFUL LAKE REHABILITATION PROJECT IN SOUTH-CENTRAL NEBRASKA. P. J. Spirk, B. A. Newcomb, and K. O. …

Non-Blackbird Avian Occurrence And Abundance In North Dakota Sunflower Fields, Dionn A. Schaaf, George M. Linz, Curt Doetkott, Mark W. Lutman, William J. Bleier

The Prairie Naturalist

Sunflower fields are well-documented as foraging habitat for fallmigrating blackbirds (Family Icteridae). There is, however, a paucity of information on the use of sunflower fields by non-blackbirds. We assessed non-blackbird use of 12 ripening sunflower fields in the Prairie Pothole Region of central North Dakota. From mid-August to mid-October 2000, we counted 4,129 individual birds, consisting of 22 families and 61 species, in the sample fields and within 5 m of the field edges. We saw the largest number of birds from 18 September to 27 September. The Family Emberizidae (sparrows) accounted for 26% of the species and 20% of …

A Case Study Of A Successful Lake Rehabilitation Project In South-Central Nebraska, Peter J. Spirk, Brad Newcomb, Keith D. Koupal

The Prairie Naturalist

Cottonmill Lake, a 17.4 ha impoundment located in Buffalo County, Nebraska, was a fishery dominated by common carp (Cyprinus carpio). As a result of the poor sportfish populations, angler participation in May and June of 1993 was low (503 ± 210 angler hours) and angler catch rates for all fish species (0.5 ± 0.4 fish/angler hour) was less than desired. In 1995, before rehabilitation, bluegill (Lepomis macrochirus) trap net catch per unit effort (CPUE) was 1.5 ± 0.9, largemouth bass (Micropterus salmoides) catch per hour of electrofishing was 8.0 ± 0.5, and channel catfish (Ictalurus punctatus) …

Nest Site Preference And Nesting Success Of Upland Sandpiper On Grazing Systems In East Central North Dakota-, Blane A. Klemek

The Prairie Naturalist

require ranchers to move their cattle throughout the range from one paddock to another, thereby allowing formerly grazed paddocks to regenerate. This is beneficial in a number of ways: overgrazing is reduced, cattle weight-gains are improved, suitable nesting cover for ground nesting birds is produced, and the overall health of the grassland is enhanced (Sedivec and Barker 1991). The objectives of my study were to investigate nesting success of the upland sandpiper as a function of grazing regime. Specifically, I was interested in comparing nesting success between RGS and non-rotational grazing systems (NRGS) and to examine relationships between nest site …

Using Local Knowledge And Remote Sensing To Map Known And Potential Prairie-Chicken Distribution In Kansas, Michael E. Houts, Randy D. Rodgers, Roger D. Applegate, William H. Busby

The Prairie Naturalist

The greater prairie-chicken (Tympanuchus cupido) and lesser prairie-chicken (Tympanuchus pallidicinctus) have experienced considerable fluctuations in their range and distribution over time. Having current range maps would help wildlife managers and policy makers with decisions regarding prairie-chicken habitat. To create an updated and accurate map of the Kansas prairie-chicken range, a two-pronged approach was implemented. First, a map of potential habitat was created by using known habitat preferences and avoidance factors. Second, a preliminary map showing the distribution of greater and lesser prairie-chickens was created and mailed to regional experts for comments and edits. The returned edits …

Semi-Melanistic White-Tailed Deer In Northern Wisconsin, Christopher N. Jacques, Keith R. Mccaffery, Jonathan Jenks, John T. Baccus

The Prairie Naturalist

Melanistic color morphs of white-tailed deer (Odocoileus virginianus) are differentiated from other recognized color morphs by having uniform black hairs on the dorsal surface with subdued black hairs on the ventral surface, dark face and ears, a distinctive mid-dorsal stripe extending from the head to the apex of the tail, and a tail with black dorsally and white ventrally (Baccus and Posey 1999). Melanism results from the overproduction of the skin pigment melanin and is considered rare in white-tailed deer populations (Severinghaus and Cheatum 1956, Sauer 1984, Smith et al. 1984). Semi-melanistic deer have the same dark pelage …

The Prairie Naturalist 2008, Volume 40: Reviewers, Author Index, & Subject Index

The Prairie Naturalist

No abstract provided.

Spawning Salmon Disrupt Trophic Coupling Between Wolves And Ungulate Prey In Coastal British Columbia, Chris T. Darimont, Paul C. Paquet, Thomas E. Reimchen

Nonindigenous Pests and Biological Invasions Collection

Background: As a cross-boundary resource subsidy, spawning salmon can strongly affect consumer and ecosystem ecology. Here we examine whether this marine resource can influence a terrestrial wolf-deer (Canis lupus-Odocoileus hemionus) predator-prey system in coastal British Columbia, Canada. Data on resource availability and resource use among eight wolf groups for three seasons over four years allow us to evaluate competing hypotheses that describe salmon as either an alternate resource, consumed in areas where deer are scarce, or as a targeted resource, consumed as a positive function of its availability. Faecal (n = 2203 wolf scats) and isotopic analyses (n = 60 …

Population Structure Of Coyote (Canis Latrans) In The Urban Landscape Of The Cleveland, Ohio Area, Rebecca M. Rashleigh, Robert A. Krebs, Harry Van Keulen

Biological, Geological, and Environmental Faculty Publications

To obtain information on the population structure of coyote (Canis latrans) in an urban setting, a non-invasive genetic sampling technique was applied that consisted of DNA isolation from scat collected around the Cleveland metropolitan area. Muscle tissue was provided from two other coyotes. Amplifying the mitochondrial D-loop or control region produced 33 haplotypes from just 57 coyote sequences and two additional dog sequences from putative coyote-dog hybrids. The mitochondrial DNA genetic diversity in the Cleveland area was high, π 0.02, and composed of six distinct haplotype lineages. In addition, Fst values ranged from 0.07 between collections east and west of …

Winterkill And Biomass Of The Painted Turtle In A South Dakota Wetland, Steven G. Platt, Zannita Fast Horse, Warren Cross, Sylvio Mannel, Thomas R. Rainwater

The Prairie Naturalist

Winterkill occurs when drought conditions expose hibernating turtles to desiccation and lethaly cold temperatures. Winterkill is thought to represent a major source of mortality in northern populations of the painted turtle (Chrysemys picta), but few field observations are available. We herein reported on catastrophic winterkill among western painted turtle (C. pieta bellii) at Limestone Butte Lake (LBL) in western South Dakota during the winter of 2003-2004. Additionally, we used the carcasses of winterkilled turtles (n = 86) to estimate the standing crop biomass of the painted turtle at LBL (0.6 kg/ha). This was the only estimate …

Paddlefish Egg Deposition In The Lower Yellowstone River, Montana And North Dakota, Shannon E. Miller, Dennis L. Scarnecchia, Steven R. Fain

The Prairie Naturalist

We used passive egg collectors during May, June, and July of2003 and 2004 in the lower 50 river kiiometers (rkm) of the Yellowstone River, eastern Montana and western North Dakota, to detect egg deposition by spawning paddle fish (Polyodon spathula). Sampling yielded 292 eggs (46 in 2003 and 246 in 2004). All egg collections in 2003 occurred on the descending limb of the spring hydrograph but 99% of egg collections in 2004 occurred before the spring hydrograph began to descend. Catch-per-unit-effort (CPUE) in 2004 was about four times that of 2003. A combination of river conditions, in addition …

Fish Distributions And Nutrient Cycling In Streams: Can Fish Create Biogeochemical Hotspots, Peter B. Mcintyre, Alexander S. Flecker, Michael J. Vanni, James M. Hood, Brad W. Taylor, Steven A. Thomas

Dartmouth Scholarship

Rates of biogeochemical processes often vary widely in space and time, and characterizing this variation is critical for understanding ecosystem functioning. In streams, spatial hotspots of nutrient transformations are generally attributed to physical and microbial processes. Here we examine the potential for heterogeneous distributions of fish to generate hotspots of nutrient recycling. We measured nitrogen (N) and phosphorus (P) excretion rates of 47 species of fish in an N-limited Neotropical stream, and we combined these data with population densities in each of 49 stream channel units to estimate unit- and reach-scale nutrient recycling. Species varied widely in rates of N …

Mitochondrial Genomes Reveal An Explosive Radiation Of Extinct And Extant Bears Near The Miocene-Pliocene Boundary, Johannes Krause, Tina Unger, Aline Nocon, Anna-Sapfo Malaspinas, Sergios-Orestis Kolokotronis, Mathias Stiller, Leopoldo Soibelzon, Helen Spriggs, Paul H. Dear, Adrian W. Briggs, Sarah C. E. Bray, Stephen J. O'Brien, Gernot Rabeder, Paul Matheus, Alan Cooper, Montgomery Slatkin, Svante Paabo, Michael Hofreiter

Biology Faculty Articles

Background: Despite being one of the most studied families within the Carnivora, the phylogenetic relationships among the members of the bear family (Ursidae) have long remained unclear. Widely divergent topologies have been suggested based on various data sets and methods.

Results: We present a fully resolved phylogeny for ursids based on ten complete mitochondrial genome sequences from all eight living and two recently extinct bear species, the European cave bear (Ursus spelaeus) and the American giant short-faced bear (Arctodus simus). The mitogenomic data yield a well-resolved topology for ursids, with the sloth bear at the basal …

Endangered Species Bulletin – Summer 2008, Volume 33, No. 2

Endangered Species Bulletin

Table of Contents:
Restoring a Vital Partnership
Apache Leader Promotes Tribal Conservation Rights
A Shared Responsibility
Tribal Wildlife Grants
Hoopa Tribe Leads in Fisher Conservation
Restoring Endangered Species on the Pueblo of Santa Ana
Penobscot Indian Nation Aids River Restoration
Traditional Ecological Knowledge
The Fox People Care for a Rabbit
Mill Creek Restoration Project Departments
Partners for Pollinators
Partners for Fish and Wildlife
Focus on Hatcheries
USGS Research News
Children in Nature
Listing Actions

Slides: Adapting Western Water Policy For Resilience Under Climate Change, Bonnie G. Colby

Shifting Baselines and New Meridians: Water, Resources, Landscapes, and the Transformation of the American West (Summer Conference, June 4-6)

Presenter: Dr. Bonnie G. Colby, Professor of Resource Economics & Hydrology, University of Arizona Department of Agriculture & Resource Economics

22 slides

Slides: The Big Questions, Doug Kenney

Shifting Baselines and New Meridians: Water, Resources, Landscapes, and the Transformation of the American West (Summer Conference, June 4-6)

Presenter: Doug Kenney, Natural Resources Law Center, University of Colorado Law School

7 slides

Slides: Linking Growth, Land Use And Water, Jim Holway

Shifting Baselines and New Meridians: Water, Resources, Landscapes, and the Transformation of the American West (Summer Conference, June 4-6)

Presenter: Jim Holway, Global Institute of Sustainability, Civil and Environmental Engineering, Arizona Water Institute, Arizona State University

29 slides

Slides: The Urbanizing West: Limits To Water, Limits To Growth, Lora A. Lucero

Shifting Baselines and New Meridians: Water, Resources, Landscapes, and the Transformation of the American West (Summer Conference, June 4-6)

Presenter: Lora A. Lucero, AICP, American Planning Association

18 slides

Slides: Water Needs And Strategies For A Sustainable Future, Shaun Mcgrath

Shifting Baselines and New Meridians: Water, Resources, Landscapes, and the Transformation of the American West (Summer Conference, June 4-6)

Presenter: Shaun McGrath, Program Director, Western Governors’ Association

25 slides

Slides: Beyond Rethinking: Redoing Western Water Law, Janet Neuman

Shifting Baselines and New Meridians: Water, Resources, Landscapes, and the Transformation of the American West (Summer Conference, June 4-6)

Presenter: Professor Janet Neuman, Lewis & Clark Law School

17 slides

Slides: Threats To Biological Diversity: Global, Continental, Local, J. Michael Scott

Shifting Baselines and New Meridians: Water, Resources, Landscapes, and the Transformation of the American West (Summer Conference, June 4-6)

Presenter: J. Michael Scott, U.S. Geological Survey, Idaho Cooperative Fish and Wildlife Research Unit, University of Idaho

38 slides

Slides: Protecting Biodiversity Through Ecosystem Services, Barton "Buzz" Thompson

Shifting Baselines and New Meridians: Water, Resources, Landscapes, and the Transformation of the American West (Summer Conference, June 4-6)

Presenter: Barton “Buzz” Thompson, Perry L. McCarty Director, Woods Institute for the Environment, Stanford University Law School

14 slides

Slides: Global Warming And The Endangered Species Act, Kieran Suckling

Shifting Baselines and New Meridians: Water, Resources, Landscapes, and the Transformation of the American West (Summer Conference, June 4-6)

Presenter: Kieran Suckling, Center for Biological Diversity

15 slides

Slides: Rethinking Western Water Law: Whatever Happened To The Public Interest?, Mark Squillace

Shifting Baselines and New Meridians: Water, Resources, Landscapes, and the Transformation of the American West (Summer Conference, June 4-6)

Presenter: Mark Squillace, Director, Natural Resources Law Center, University of Colorado Law School

15 slides

Rethinking Western Water Law: Instream Flows, Reed D. Benson

Shifting Baselines and New Meridians: Water, Resources, Landscapes, and the Transformation of the American West (Summer Conference, June 4-6)

Presenter: Reed D. Benson, University of New Mexico School of Law

1 page.

Sustainable Water Policies In The Rocky Mountain West: An Action Agenda, Sarah Bates

Shifting Baselines and New Meridians: Water, Resources, Landscapes, and the Transformation of the American West (Summer Conference, June 4-6)

Presenter: Sarah Bates, Western Progress

10 pages.

Includes bibliographical references

"Review Draft, May 15, 2008"