Life Sciences Commons^™

Do Mesopelagic Fish Biomass Patterns Change In Response To Major Oceanographic Features In The Northern Gulf Of Mexico?, Ian M. Areford

All HCAS Student Capstones, Theses, and Dissertations

In recent years interest in mesopelagic fishes has grown due to their ecological significance and economic potential. A major outstanding question is how the assemblage is potentially structured by mesoscale (10 - 100s km) oceanographic features such as eddies, fronts, and riverine plumes. Mesoscale features are known to influence micronekton and zooplankton’s spatial distributions but data on individual mesopelagic fish species’ responses are limited. The Gulf of Mexico (GoM) is an area of particular interest due to its diverse mesopelagic fish assemblage, its well-defined mesoscale oceanographic features, its history of anthropogenic impacts such as oil spills, and its diverse mesopelagic …

Modeling The Effect Of Neighborhood Competition On Tree Diameter Growth In The Pacific Northwest Coast Range, Htet Lin Naing

Theses and Dissertations

Trees compete for various resources such as sunlight, water, and nutrients, which can be expressed as numerical terms, called competition indices (CI). Competition between individual trees is correlated with their growth and mortality. Therefore, CIs are used as independent variables to develop, improve and modify growth and yield models. This study was conducted to test the effect of neighborhood competition on tree diameter growth among Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco), western hemlock (Tsuga heterophylla (Raf.) Sarg) and red alder (Alnus rubra Bong.), in the Pacific Northwest Coast Range, USA. After testing seven distance-independent CIs and three distance-dependent …

Study Of Morphological And Physiological Properties And Pollinators Of The Invasive Callery Pear, Prabina Sharma

All Theses

Callery pear is an invasive tree in 15 states of United States and is currently present in 37 states. Its management has challenged landowners and land managers. Despite being listed as a noxious weed in four states, its study is limited. The accurate estimation of Callery pear biomass will give a clearer picture of the level of invasion and help land managers develop different strategies to control its population. Similarly, identifying possible pollinators of Callery pear is essential to have some insights on pollinators associated with this tree. Hence, the objectives of this study are 1) to calculate total above-ground …

Quantifying The Carbon Stored And Sequestered By The Trees On Pomona College’S Campus, Paola A. Giron-Carson

Scripps Senior Theses

We are experiencing a climate crisis that must be confronted with strategic mitigation. Pomona College contributes to the climate crisis through its emissions for which there is a baseline record. However there is no baseline record of the climate mitigation currently performed by the trees on Pomona’s campus through carbon storage. This study seeks to determine a current baseline quantity of carbon stored and sequestrated by Pomona’s trees as well as possible courses of climate mitigation for Pomona College to take. Initial information gathering was conducted through interviews with several stakeholders. This study was conducted using data collected prior to …

Production, Best Management Practices, And Market Impacts Of Forest Biomass Harvest And Collection In The Mid-Atlantic Region, William E. Smith

Graduate Theses, Dissertations, and Problem Reports

Time motion studies were conducted at five mid-Atlantic sites that spanned various operations in West Virginia, Ohio, and Pennsylvania. The harvest systems included integrated harvests where chips were produced in the forest, roundwood systems where only roundwood was produced, and a centralized chipping system. The study collected overall productivity and machine utilization data at the various harvesting operations. The cost per green ton of woody biomass ranged from $18.46 to $39.8 resulting in an average of $30.33 among the five systems. Hauling had the highest average price per green ton at $9.10, while loading had the lowest at $1.73 per …

Changes In Poplar Digestibility Due To Overexpression Of Laccase Genes, Fnu Arunima

Dissertations, Master's Theses and Master's Reports

Woody biomass, particularly poplar, is a sought-after feedstock for lignocellulosic biofuels because of its year-round availability and high productivity. Because of cell wall components like lignin, poplar is inherently resistant to enzymatic saccharification. The experiment aims to determine whether the controlled overexpression of laccase genes alters the biomass composition and whether it can create poplar that is more digestible than the wildtype.

Three sets of transgenic poplar (Populus tremula x alba) samples were evaluated: laccase 18, laccase 27, and STTM. Laccase 18 samples, an target of miRNA397a was overexpressed along with Laccase 27. Short Tandem target Mimic (STTM) technology …

Propagation, Physiology And Biomass Of Giant Cane (Arundinaria Gigantea) For Conservation And Restoration, Sanjeev Sharm

MSU Graduate Theses

Giant cane (Arundinaria gigantea) is a native species to 22 states in the U.S. The species and its ecosystem are considered critically endangered, and the species has been reduced to 2% of its original extent. The species has a long cultural and conservation history. Large canebrakes were commonly found in Missouri in bottomland forests, stream and riverbanks, and margins of lakes. My research goals were to: 1) examine methods for propagation success from field to greenhouse to field; 2) examine the physiology of cane at one of the few current canebrakes, for greenhouse propagated plants, and field planted …

Phenotypic Evaluation Of Energycane (Saccharum Spp.) Genotypes In Northcentral Mississippi, Wyatt Armistead Eason

Theses and Dissertations

As fossil fuel supplies decrease and concerns of climate change increase, the search for alternative sources of fuel has pushed biomass crops to the forefront of discussion. Saccharum spontaneum readily hybridizes with commercial sugarcane and lends cold tolerance and greater yields to the hybrid progeny, called energycane. Twenty genotypes were tested against an energycane variety (Ho 02-113) as a control. Two locations were tested: the HH Leveck Animal Research Center (planted in 2019), and the Bearden Dairy Research Center (planted in 2020). The Bearden Dairy Research Center yielded significantly higher than the HH Leveck Animal Research Center regarding dry matter …

Quantifying Aboveground Biomass In A Tropical Forest Using A Lidar Waveform Weighted Allometric Model, Alejandro Rojas

Theses and Dissertations

Our knowledge of the distribution and amount of terrestrial above ground biomass (AGB) has increased using lidar technology. Recent advancements in satellite lidar has enabled global mapping of forest biomass and structure. However, there are large biases in satellite lidar estimates which impacts our understanding of carbon dynamics, particularly in tropical forests.

Ni-Meister et al. (2022) developed a lidar full waveform weighted height-based allometric model which produced very good results in temperate deciduous/conifer forest in the continental US. The purpose of this study was to evaluate this biomass model in an African tropical forest using the Land Vegetation and Ice …

Using Thermal Units To Predict Biomass Accumulation And Total Nitrogen Uptake For Cover Crops In Arkansas, Mila Victório Pessotto

Graduate Theses and Dissertations

Including cover crops in agricultural production systems is an important management practice. Cover cropping can improve soil health, increase plant-available nitrogen (N), provide surface residue to prevent erosional soil loss, increase water infiltration, and increase weed suppression. Cover crops growth can be predicted using thermal days or growing degree days [GDD] similar to commodity crops such as corn (Zea mays L.) or rice (Oryza sativa). Growing degree day calculations are a well-known tool to predict crop growth stage or development stage and can be adapted for use in any plant species, including cover crops. Identifying and developing the relationship between …

Pasture Biomass Estimation Using Crop Surface Modeling And Vegetation Indices, Brendan Macinnis

All Theses

Biomass estimations are a critical function of any grazing or haylage system. Determination of ideal harvesting or grazing times help optimize the quality and quantity of above-ground biomass (AGB). The objective of this study was to evaluate the use of unmanned aerial vehicles (UAVs) for Alfalfa and Tall Fescue biomass estimations. Using a DJI Mavic Pro, RGB and NDVI images were taken and used to create orthomosaic images. Structure-from-motion (SfM) techniques were used to developed digital elevation models to evaluate the change in canopy height (∆H) between pre- and post-harvests. Change in canopy height (∆H) was shown to provide the …

The Deep-Pelagic Sergestid Shrimp Assemblage In The Gulf Of Mexico In The Vicinity Of The Deepwater Horizon Oil Spill, Erik W. Hine

All HCAS Student Capstones, Theses, and Dissertations

This thesis focuses on the geographical (near-slope vs. offshore) and temporal analyses (2011 – 2018) of the Sergestidae assemblage, the crustacean family with the fourth highest total biomass, in the Gulf of Mexico near the location of the Deepwater Horizon oil spill. The abundance and biomass of the assemblage were analyzed to determine if statistical differences were present between the near-slope and offshore environments. In addition, this study analyzed the vertical distributions of sergestid species in the epipelagic, mesopelagic, and bathypelagic zones to determine the extent of the migratory behavior of these species. Lastly, the abundance and biomass in the …

Comparing Macroinvertebrate Total Abundance And Total Biomass On Five Substrate Types From Upstream To Downstream On The North Branch Of The Au Sable River, Paul David Dingman

Masters Theses

The North Branch of the Au Sable River is located in the northern lower peninsula of Michigan and is known for prolific hatches of Ephemeroptera (mayflies), Trichoptera (caddisflies), and Plecoptera (stoneflies). Macroinvertebrates play an important role in processing and recycling organic material in rivers and are a valuable food source for trout. In 2018, anglers were reporting catching fewer numbers of brook and brown trout (Salmo trutta and Salvelinus fontinalis). The Michigan Department of Natural Resources (MDNR) determined significantly lower abundance than the historical average. We hypothesized that trout abundances were lower due to a lack of prey …

Investigation Of Interactions Between 1,3 Dialkyl Imidazolium Ionic Liquids And Lignocellulosic Polymers, Aparna Annamraju

Doctoral Dissertations

Lignocellulosic biomass is a potential energy source for fuels, chemicals and materials production in a sustainable manner. A network of covalent and non-covalent bonds between the three main polymers of biomass, i.e., cellulose, hemicellulose and lignin, results in a compact structure that is resistant to chemical and biological attacks and therefore challenging for the efficient utilization of lignocellulosic biomass. Ionic liquids (ILs) have been reported to disrupt the bonds between these polymers and dissolve biomass at temperatures below 100 ˚C. Research through the years has shown that biomass pretreatment with IL brings out the selective dissolution of biomass polymers and …

Geo-Spatial Modeling Of Carbon Sequestration Assessment In Date Palm, Abu Dhabi: An Integrated Approach Of Fieldwork, Remote Sensing, And Gis, Basam Saeed Dahy

Dissertations

The United Arab Emirates (UAE) has undertaken huge efforts to green the desert and afforestation projects (planted mainly with date palms) hence, reducing its carbon footprint, which have never been accounted for, because of lack of implemented mechanisms and tools to assess the amount of biomass and carbon stock (CS) sequestered by plants in the country. The purpose of this dissertation is to implement a new approach towards assessing the carbon sequestered by date palm (DP) plantations in Abu Dhabi, in both their biomass compartment as well as the soils under beneath, using geospatial technologies (RS and GIS) assessed by …

Satellite-Based Phenology Analysis In Evaluating The Response Of Puerto Rico And The United States Virgin Islands' Tropical Forests To The 2017 Hurricanes, Melissa Collin

Cal Poly Humboldt theses and projects

The functionality of tropical forest ecosystems and their productivity is highly related to the timing of phenological events. Understanding forest responses to major climate events is crucial for predicting the potential impacts of climate change. This research utilized Landsat satellite data and ground-based Forest Inventory and Analysis (FIA) plot data to investigate the dynamics of Puerto Rico and the U.S. Virgin Islands’ (PRVI) tropical forests after two major hurricanes in 2017. Analyzing these two datasets allowed for validation of the remote sensing methodology with field data and for the investigation of whether this is an appropriate approach for estimating forest …

The Gene Expression Patterns Of Phanerochaete Chrysosporium And Trametes Versicolor On Diverse Lignocellulosic Feedstocks, Noor Osama Alabbasi

Masters Theses

Plant biomass is considered to be an important future starting material for fuels and chemicals, thereby decreasing our reliance on fossil fuels. While direct combustion continues to be a source of fuel, the generation of liquid fuels from plant biomass for transportation has proven to be challenging. Among the limiting factors for conversion of this material to biofuels is the recalcitrant nature of lignocellulose, the primary component of non-starch plant biomass. A strategy to overcome this dilemma is to directly or indirectly use the enzymes from white-rot fungi, which have evolved a unique ability to deconstruct lignocellulose. However, the biochemical …

Biological Pretreatment Of Biomass For Enhanced Biogas Production, Skylar F. Van Horne

Undergraduate Honors Theses

The biogas output efficiency of controlled anaerobic digestion (AD) can be enhanced by several different pretreatment methods to produce renewable energy. According to the literature, there are pros and cons to each pretreatment method. Biological pretreatment provides environmentally safe and renewable means for enhancing biodegradability and net energy output. Current research has yet to reliably demonstrate the ability of bacterial strains, such as Caldicellulosiruptor bescii (C. bescii), to digest common waste substrates in efficient ways. Novel methods in key intermediate molecular quantification and alkalinity tracking are used here to explore C. bescii’s ability to digest lignocellulosic material in …

Use Of Multibeam And Split-Beam Sonar To Observe Changes In Fish School Biomass In Relation To Dolphin Abundance, Reece Eleanor Aponte

Electronic Theses and Dissertations

No abstract provided.

Effects Of Supplementing Crystalline L-Valine And L-Isoleucine And A Novel Threonine Biomass In Reduced Crude Protein Diets Fed To Broilers, Derrell Trevor Lee

Graduate Theses and Dissertations

Poultry nutritionists continue to identify methods to lower feed price without compromising broiler growth performance, processing yields, or animal well-being. A common approach is to reduce dietary crude protein (CP), the second most expensive component in a broiler diet. Subsequently, reducing CP will reduce the inclusion levels of intact protein sources (e.g., soybean meal [SBM]), which can be accomplished by supplementing individual amino acids (AA). This methodology not only reduces diet cost, pending if feed-grade AA are more economical, but can contribute to improving broiler health and environmental sustainability. Therefore, two experiments were conducted to evaluate individual feed-grade AA in …

Simulated Mine Land Reclamation Impact On Biomass Partitioning And Nutrient Contents In Loblolly Pine, Osarumen Egharevba

Electronic Theses and Dissertations

Forest productivity on reclaimed mine land is hindered by soil compaction. Different techniques have been used to alleviate the effect of compaction to various degrees of success. The Forestry Reclamation Approach (FRA) was developed in the Appalachians and has been used to improve forest productivity on reclaimed mines in this region. The FRA provides a step by step method designed to reduce compaction, control erosion, provide land stabilization and accelerate forest succession. This method had not been evaluated in the Gulf Coastal Plain, where the pan scraper reclamation method is commonly used. However, using pan scrapers increases mine soil compaction …

A Cloning Strategy For Expression Of Fungal Hemicellulases In Plant Systems, Amer Alrudayan

Masters Theses

Lignocellulosic biomass is notoriously difficult to deconstruct into lignin, hemicellulose, and cellulose fractions without the use of biochemical, chemical, and/or mechanical pretreatments. These pretreatment strategies add operational cost and in some cases produce hazardous waste that poses health and safety risks. Direct biological pretreatment from biomass-degrading bacteria and fungi may significantly reduce the costs and risks associated with these traditional strategies due to the innate ability of these organisms to modify plant cell walls. An additional measure that could further reduce the expenses associated with lignocellulosic biomass fractionation is genetic modification of the lignocellulosic feedstocks, which can be accomplished by …

Salt Marsh Health And Biomass Responses To A Changing Environment, Gwen Joelle Miller

Theses and Dissertations

Coastal salt marshes are important ecosystems not only for their aesthetic beauty but also for their ecosystem services that they provide including improving water quality, providing protection from storm surges and hurricanes, and carbon sequestration. With climate change, including drought, warmer temperatures and sea-level rise, these systems are going to be impacted. Understanding how salt marshes will respond, or already have responded, to climate change will help us be better prepared for the future. By scripting a model to project how marshes may migrate with sea-level rise, I discover that salt marshes within Beaufort and Jasper counties, South Carolina will …

Forest Feedstock Supply Chains And Market Potential For Wood Pellet Facilities In The Ozark And Appalachia Regions, James Robert Criger

MSU Graduate Theses

The pellet wood industry in the United States has grown exponentially in recent years, due mostly to the expanding export market to Europe. At this time, the European market for pellet wood is highly subsidized as part of the Renewable Energy Directive (RED) in an effort to mitigate fossil fuel consumption for power production. Although there are other popular renewable resources such as wind, water, and solar, the burning of biomass is among the most utilized sources of renewable energy today. This study examines the existing pellet wood industry in the United States, particularly within the Ozarks and Appalachia Regions, …

Forest Disturbance Detection And Aboveground Biomass Modeling Using Moderate-Resolution, Time-Series Satellite Imagery, John B. Kilbride

Electronic Theses and Dissertations

Human-induced and natural disturbances are an important feature of forest ecosystems. Disturbances influence forest structure and composition and can impact crucial ecosystem services. However, deriving spatially explicit estimates of past forest disturbance across a large region can prove challenging. Researchers have recognized that remote sensing is an important tool for monitoring forest ecosystems and mapping land use and land cover change. One of the most important sources of remotely sensed imagery is the United States Geologic Survey’s Landsat program which has continuously acquired earth observations since 1972. This repository of imagery has the spatial, spectral, and temporal resolution necessary to …

The Role And Contribution Of Saprotrophic Fungi During Standing Litter Decomposition Of Two Perennial Grass Species, Schizachyrium Scoparium And Schizachyrium Tenerum, Matthew Lodato

Master's Theses

In terrestrial ecosystems, most of the plant biomass produced enters the detrital pool, where microbial decomposers colonize, enzymatically degrade, and assimilate plant litter carbon and nutrients in amounts sufficient to bring about the decomposition of plant litter. Here, I estimated the biomass and production of fungi and microbial respiration associated with decaying Schizachyrium scoparium and Schizachyrium tenerum leaf litter, and constructed a partial organic matter budget estimating C flow into and through fungal decomposers. Significant losses in S. scoparium (57%) and S. tenerum (68%) leaf mass was observed during litter decomposition along with concomitant increases in fungal biomass, which reached …

Characteristics Of Activated Carbons Produced From Herbaceous Biomass Feedstock, Oluwatosin Jerry Oginni

Graduate Theses, Dissertations, and Problem Reports

Energy security and environmental protection are at the forefront of research due to the forecasted depletion of fossil fuel reserves and the growing concern of its adverse environmental impacts. The use of renewable sources for energy applications has centered on the use of biomass feedstocks and this include from herbaceous, woody, agricultural waste, forest residues and municipal wastes. The thermochemical conversion (pyrolysis) of these biomass feedstocks has potential to produce liquid fuel, a solid residue (biochar) and non-condensable gas. The biochar is primarily composed of renewable porous carbon and other inorganic compounds. The biochar is used for soil amendment, adsorption …

Estimation Of Dbh Using Tree Variables Derived From Aerial Lidar For Ford Forest, Baraga, Michigan, Tugay Demiraslan

Dissertations, Master's Theses and Master's Reports

This study implemented LiDAR (Light Detection and Ranging) remote sensing technology and applied ITD (Individual Tree Detection) methods as an approach to estimate some essential tree variables, such as DBH (Diameter at Breast Height), height, volume, and biomass for Ford Forest Research Center in Upper Peninsula, Michigan. There were 34 deciduous (1 bigtooth aspen, 9 red oaks, 20 sugar maples, 2 white birches, and 2 yellow birches) and 17 coniferous (2 eastern hemlocks, 11 red pines, and 4 white pines) subject tree species. There were two different available LiDAR datasets from the same area that were collected in 2011 and …

Response To Nitrogen And Salinity Conditions In Rhizophora Mangle Seedlings Varies By Site Of Origin, Kristen L. Langanke

USF Tampa Graduate Theses and Dissertations

Many coastal plant species thrive across a range of environmental conditions, often displaying dramatic phenotypic variation in response to environmental variation. We characterized the response of the critical foundation species Rhizophora mangle L. to full factorial combinations of salt and nitrogen (N). We used seedlings collected from five populations and measured traits related to salt tolerance and N amendment. The response to increasing salt included significant plasticity in succulence, leaf mass area (LMA), and root to shoot ratio (R:S). Seedlings also showed overall reduced maximum photosynthetic rate in response to N amendment, but this response depended on the level of …

Managing Exoelectrogenic Microbial Community Development Through Bioprocess Control For Conversion Of Biomass-Derived Streams, Alex James Lewis

Doctoral Dissertations

Bioelectrochemical systems are an emerging technology capable of utilizing aqueous waste streams generated during biomass conversion of lignocellulosic feedstocks to produce valuable co-products and thus, have potential to be integrated into biorefineries. In a microbial electrolysis cell, organic compounds are converted to electrons, protons, and CO₂ by fermentative and exoelectrogenic bacteria in the anode compartment. By having the ability to extract electrons from waste streams, these systems can treat water while also producing hydrogen, and thus can improve the efficiency of biomass to fuel production by minimizing external hydrogen requirement and enabling water recycle. The overall goal of this …