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Articles 1 - 30 of 42
Full-Text Articles in Life Sciences
Seasonal Flammability Comparisons Of Native And Exotic Plants In The Post Oak Savannah, Blackland Prairie, And Pineywoods Ecoregions Of Texas, Michael Tiller
Seasonal Flammability Comparisons Of Native And Exotic Plants In The Post Oak Savannah, Blackland Prairie, And Pineywoods Ecoregions Of Texas, Michael Tiller
Electronic Theses and Dissertations
East Texas’ diverse landscape can present year-round wildfire seasons that can be influenced by seasonal and regional differences in climate and physiography. Greater insight into the fundamental thermal behavior of wildland fuels can aid in fire behavior prediction and development of fire-resistant plant lists. This study focused on estimating seasonal and regional flammability characteristics of five evergreen species: yaupon (Ilex vomitoria), Chinese privet (Ligustrum sinense), greenbrier (Smilax spp.), eastern red cedar (Juniperus virginiana), and escarpment live oak (Quercus fusiformis); and two deciduous species: Chinese tallow (Triadica sebifera) and southern …
Computationally Modeling Dynamic Biological Systems, Katherine Jarvis
Computationally Modeling Dynamic Biological Systems, Katherine Jarvis
Electronic Theses and Dissertations
Modeling biological systems furthers our understanding of dynamic relationships and helps us make predictions of the unknown properties of the system. The simple interplay between individual species in a dynamic environment over time can be modeled by equation-based modeling or agent- based modeling (ABM). Equation based modeling describes the change in species quantity using ordinary differential equations (ODE) and is dependent on the quantity of other species in the system as well as a predetermined rates of change. Unfortunately, this method of modeling does not model each individual agent in each species over time so individual dynamics are assumed to …
Biotic Interactions At Species’ Range Limits In A Changing Climate, Isaac Shepard
Biotic Interactions At Species’ Range Limits In A Changing Climate, Isaac Shepard
Electronic Theses and Dissertations
As the global climate changes, many species are shifting their geographic ranges, often towards the poles or upslope in elevation. The ubiquity of these observation has renewed discussions about the mechanisms that determine species’ range margins. Leading hypotheses state abiotic variables should be the most important factor for setting range limits in environmentally stressful habitats. However, I propose an alternative hypothesis that biotic interactions may still be critically important for setting range limits, even in abiotically stressful habitats. Using a model system of ponds in the Rocky Mountains of Colorado, I developed several field experiments to empirically test the role …
Forest Disturbance And Occupancy Patterns Of Carnivores: Results Of A Large-Scale Field Study In Maine, Usa, Bryn E. Evans
Forest Disturbance And Occupancy Patterns Of Carnivores: Results Of A Large-Scale Field Study In Maine, Usa, Bryn E. Evans
Electronic Theses and Dissertations
Understanding trends in the abundance and distribution of carnivores is important at global, regional and local scales due to their ecological role, their aesthetic and economic value, and the numerous threats to their populations. Carnivores in Maine range from the American black bear (Ursus americanus), to numerous native mesocarnivore species, such as American marten (Martes americana), fisher (Pekania pennanti), coyote (Canis latrans), red fox (Vulpes vulpes), bobcat (Lynx rufus), Canada lynx (Lynx canadensis) and to two small weasel species (Mustela erminea and Neogale frenata). …
Gradient Generating Microfluidic Coculture System For Disease Modeling And Neural Development, Phaneendra Chennampally
Gradient Generating Microfluidic Coculture System For Disease Modeling And Neural Development, Phaneendra Chennampally
Electronic Theses and Dissertations
Cellular microenvironment or cell niche plays an important role in developmental biology and disease pathophysiology. Physical or chemical signals in microenvironment drive the cellular activity. These signaling molecules are generated from the surrounding cells/tissues as part of intercellular communication; a fundamental property of a cell. Dynamic profile of these signaling molecules in the microenvironment plays a pivotal role in transfer of molecular information from cell to cell in disease proliferation or fate determination. Recapitulating these signaling cues in an in vitro study is difficult to achieve using standard cell culture techniques. However microfluidic systems are capable of addressing these issues, …
Experimental Warming Effects On Growth, Yield, And Biotic Pressure Of Wild Blueberries In Maine, Yu-Ying Chen
Experimental Warming Effects On Growth, Yield, And Biotic Pressure Of Wild Blueberries In Maine, Yu-Ying Chen
Electronic Theses and Dissertations
As the global temperature rises, a need exists for understanding the potential impacts of warming on the wild blueberry industry in Maine. Warming can change the physiology, growth, and pest pressure of crops, and also accelerates the evapotranspiration rate, resulting in decreased soil moisture. The objectives of this study were: (1) To characterize the response of phenological, morphological, and physiological traits of the wild blueberries to warming; (2) To quantify the impacts of different temperature levels on yield and berry quality; (3) To determine the abiotic and biotic factors that may influence yield, such as winter damages, freezing temperatures, the …
Distinguishing Mustela From Neogale (Mustelidae) Through Both A Qualitative And Quantitative Analysis Of Skull And Tooth Morphology, Ronald W. Peery
Distinguishing Mustela From Neogale (Mustelidae) Through Both A Qualitative And Quantitative Analysis Of Skull And Tooth Morphology, Ronald W. Peery
Electronic Theses and Dissertations
Weasels and mink (Mustela and Neogale) can be difficult to distinguish osteologically due to similarities in morphology, thus suggesting the need for an accurate tool in distinguishing among taxa. This study utilized a combination of character state and stepwise discriminant function (DFA) analyses to examine potential distinguishing features of skull and tooth morphology. Measurements and ratios were collected from all 18 extant musteline species, as well as the extinct Neovison macrodon, Mustela rexroadensis, Mustela meltoni, Mustela gazini, and Mustela jacksoni. Unidentified musteline specimens from the Gray Fossil Site were also included. Results of …
Deep Learning Applications In Medical Bioinformatics, Ziad Omar
Deep Learning Applications In Medical Bioinformatics, Ziad Omar
Electronic Theses and Dissertations
After a patient’s breast cancer diagnosis, identifying breast cancer lymph node metastases is one of the most important and critical factor that is directly related to the patient’s survival. The traditional way to examine the existence of cancer cells in the breast lymph nodes is through a lymph node procedure, biopsy. The procedure process is time-consuming for the patient and the provider, costly, and lacks accuracy as not every lymph node is examined. The intent of this study is to develop an artificial neural network (ANNs) that would map genetic biomarkers to breast lymph node classes using ANNs. The neural …
A Network-Based Approach For Computational Drug Repurposing On Cancer Data, Ann Reba, Thomas Alexander
A Network-Based Approach For Computational Drug Repurposing On Cancer Data, Ann Reba, Thomas Alexander
Electronic Theses and Dissertations
In this thesis, we are interested in finding the best drugs that can be repurposed for the disease and able to find the adverse effects such drugs that are FDA-Approved. Developing an effective drug can be a time-consuming and expensive crucible method. Network-based machine learning methods are used for predicting a given drug for A that can be used for B. It aims at finding new indications for already existing drugs and therefore increases the available therapeutic choices at a fraction of the cost of new drug development. The perturbation gene expression data corresponding to the MCF7 cell line was …
The Development And Application Of Targeted Edna Metabarcoding For Monitoring Freshwater And Marine Ais, Yueyang Wu
The Development And Application Of Targeted Edna Metabarcoding For Monitoring Freshwater And Marine Ais, Yueyang Wu
Electronic Theses and Dissertations
Species invasions are of critical concern due to their significant impacts on ecosystems and social economies, of which aquatic invasive species (AIS) often pose significant challenges in their control and management, notably because of difficulties in early detection. Environmental DNA (eDNA) provides a promising tool in advancing the detection of newly introduced aquatic organisms because of its high sensitivity and ease of use compared to traditional capture-based methods. Although eDNA-based methods are increasingly used worldwide, especially in aquatic ecosystems, most studies focus on a limited number of target species despite a pressing need for broad taxonomic monitoring for conservation and …
Population Genetic Analyses Of Arctic Char (Salvelinus Alpinus) Life History Types In Nettilling Lake & Amadjuak River Ecosystem: A Test Of Reproductive Isolation, Chen Liu
Electronic Theses and Dissertations
A great number of studies have identified strong genetic differences between sympatric anadromous and resident populations of Salmonidae. However, Arctic char (Salvelinus alpinus) migratory phenotypes in the Nettilling Lake and Amadjuak River ecosystem in Nunavut, Canada have not been genetically characterized, and it remains unclear if distinct genotypes and phenotypes associated with migratory life history differences are maintained through reproductive isolation, and they have been assumed to be sympatric populations, or co-occurring populations. Co-occurring Arctic char (n=225) were sampled from eleven sites along the Amadjuak River in 2014 and 2015. Twelve microsatellite loci were used to quantify genetic variation among …
Physiological State Determinants Of Maternal Cortisol Signaling And Its Impact On Offspring Quality And Fitness, Sydney Currier
Physiological State Determinants Of Maternal Cortisol Signaling And Its Impact On Offspring Quality And Fitness, Sydney Currier
Electronic Theses and Dissertations
Assessing the intergenerational effects of maternal stress is important for predicting how offspring will respond to changing environments. The overall aim of my thesis was to quantify the effects of maternal state on maternally derived egg cortisol and determine whether this variation in egg cortisol impacts Chinook salmon offspring performance and fitness in a sex-specific way. I quantified within-female changes in maternal energetics and reproductive metrics that I linked to egg quality and ultimately embryo survival. I found egg cortisol increases with increasing maternal plasma cortisol, and increases further as plasma cortisol levels rise with each day that eggs are …
An Enhancement To Cnn Approach With Synthesized Image Data For Disease Subtype Classification, Narider Pal Singh
An Enhancement To Cnn Approach With Synthesized Image Data For Disease Subtype Classification, Narider Pal Singh
Electronic Theses and Dissertations
The introduction of genetic testing has profoundly enhanced the prospects of early detection of diseases and techniques to suggest precision medicines. The subtyping of critical diseases has proven to be an essential part of the development of individualized therapies and has led to deeper insights into the heterogeneity of the disease. Studies suggest that variants in particular genes have significant effects on certain types of immune system cells and are also involved in the risk of certain critical illnesses like cancer. By analyzing the genetic sequence of a patient, disease types and subtypes can be predicted. Recent research work has …
To Know The Land With Hands And Minds: Negotiating Agricultural Knowledge In Late-Nineteenth-Century New England And Westphalia, Justus Hillebrand
To Know The Land With Hands And Minds: Negotiating Agricultural Knowledge In Late-Nineteenth-Century New England And Westphalia, Justus Hillebrand
Electronic Theses and Dissertations
Ever since the eighteenth century, experts have tried to tell farmers how to farm. The agricultural enlightenment in Europe marked the beginning of a long arc of new experts aiming to change agricultural knowledge and practice. This dissertation analyzes the pivotal period in the late nineteenth and early twentieth century in Germany and the United States when scientists, improvers, and market agents began to develop comprehensive ways to communicate agricultural innovation to farmers. In a functional approach to analyzing the negotiation of agricultural knowledge through its communication in things, words, and practices, this dissertation argues that the process of change …
Seasonal Habitat Use Of Diamondback Terrapins (Malaclemys Terrapin) In North Inlet, Winyah Bay, Georgetown, South Carolina, Danielle Elizabeth Capella
Seasonal Habitat Use Of Diamondback Terrapins (Malaclemys Terrapin) In North Inlet, Winyah Bay, Georgetown, South Carolina, Danielle Elizabeth Capella
Electronic Theses and Dissertations
No abstract provided.
The Effects Of Prescribed Burning On Soil Water Infiltration Rates And Other Select Soil Physical And Chemical Properties In East Texas, Cassady Pennington Dunson, Brian P. Oswald, Kenneth Farrish, Tyson Hart
The Effects Of Prescribed Burning On Soil Water Infiltration Rates And Other Select Soil Physical And Chemical Properties In East Texas, Cassady Pennington Dunson, Brian P. Oswald, Kenneth Farrish, Tyson Hart
Electronic Theses and Dissertations
This study focused on whether prescribed burning affects soil physical and chemical properties, especially water infiltration, in Western Gulf Coast forests. Soil water infiltration rates were measured 1) pre-burn (before the fire), 2) post-burn (one month after the fire), and 3) at vegetation green-up (three months after the fire). Soil samples were also collected to determine the effects of prescribed burning on soil pH, bulk density, particle density, pore space, soil strength, O-horizon weight and depth (organic matter), water stable aggregates, and soil fertility. This project was conducted on two different burn intervals. The National Forests and Grasslands of Texas …
Investigations Of Elastin Recoil On Molecular And Macroscopic Levels., Nour Mohammad Jamhawi
Investigations Of Elastin Recoil On Molecular And Macroscopic Levels., Nour Mohammad Jamhawi
Electronic Theses and Dissertations
Elastin is one of the most hydrophobic proteins, and it is extremely flexible when hydrated. The driving force for recoil is the decrease in entropy of the protein and/or the hydrating solvent. This dissertation is a study of both mechanisms. Following an introduction (Chapter 1), Chapters 2 and 3 investigate the recoil mechanism on the molecular level in the hydrating solvent and in the protein, respectively. Chapter 4 examines macroscopic properties of recoil by thermomechanics. Conclusions are discussed in Chapter 5. Using double quantum NMR, the deuterated water ordering at the elastin surface was studied quantitatively as a function of …
A Network-Based Approach For Computational Drug Repurposing On Cancer Data, Ann Reba Thomas Alexander
A Network-Based Approach For Computational Drug Repurposing On Cancer Data, Ann Reba Thomas Alexander
Electronic Theses and Dissertations
In this thesis, we are interested in finding the best drugs that can be repurposed for the disease and able to find the adverse effects such drugs that are FDA-Approved. Developing an effective drug can be a time-consuming and expensive crucible method. Network-based machine learning methods are used for predicting a given drug for A that can be used for B. It aims at finding new indications for already existing drugs and therefore increases the available therapeutic choices at a fraction of the cost of new drug development. The perturbation gene expression data corresponding to the MCF7 cell line was …
Deep Learning Applications In Medical Bioinformatics, Ziad Omar
Deep Learning Applications In Medical Bioinformatics, Ziad Omar
Electronic Theses and Dissertations
After a patient’s breast cancer diagnosis, identifying breast cancer lymph node metastases is one of the most important and critical factor that is directly related to the patient’s survival. The traditional way to examine the existence of cancer cells in the breast lymph nodes is through a lymph node procedure, biopsy. The procedure process is time-consuming for the patient and the provider, costly, and lacks accuracy as not every lymph node is examined. The intent of this study is to develop an artificial neural network (ANNs) that would map genetic biomarkers to breast lymph node classes using ANNs. The neural …
Evaluating Methods For Research In Physical Weed Control And Farm Asset Tracking, Johnny J. Sanchez
Evaluating Methods For Research In Physical Weed Control And Farm Asset Tracking, Johnny J. Sanchez
Electronic Theses and Dissertations
Effective weed control has long been recognized as critical for agricultural production, yet weeds remain a major constraint to production and economic return in many agroecosystems. Moreover, improvements in physical weed control are necessary to address increasing problems of herbicide resistance in weeds of grain and fiber crops and the high cost of hand weeding in vegetables. From tractor-mounted cultivation tools to autonomous weeders, weeding implements are affected by weeds, crops, soil conditions, and actuator effectiveness. In order to address these complex and often interacting factors concerning weed control, new and innovative tools must be designed and evaluated. Chapter one …
Lexicographic Sensitivity Functions For Nonsmooth Models In Mathematical Biology, Matthew D. Ackley
Lexicographic Sensitivity Functions For Nonsmooth Models In Mathematical Biology, Matthew D. Ackley
Electronic Theses and Dissertations
Systems of ordinary differential equations (ODEs) may be used to model a wide variety of real-world phenomena in biology and engineering. Classical sensitivity theory is well-established and concerns itself with quantifying the responsiveness of such models to changes in parameter values. By performing a sensitivity analysis, a variety of insights can be gained into a model (and hence, the real-world system that it represents); in particular, the information gained can uncover a system's most important aspects, for use in design, control or optimization of the system. However, while the results of such analysis are desirable, the approach that classical theory …
Farmer Engagement Through Mental Modeling: Opportunities For Climate Change Outreach, Ruth S, Clements
Farmer Engagement Through Mental Modeling: Opportunities For Climate Change Outreach, Ruth S, Clements
Electronic Theses and Dissertations
Climate change poses a challenge to farming systems worldwide. Effective adaptation and mitigation may be facilitated by outreach that is locally tailored and framed in terms of farmers’ perceptions and values. However, existing research suggests that farmers and those providing outreach may have different climate change perspectives, and there is little understanding of how farmers consider and prioritize climate change in relation to other aspects of their farming system. Furthermore, the diverse agricultural, economic, social, and environmental challenges farmers face require agricultural research and engagement efforts that can identify and adapt to farmers’ dynamic priorities and perceptions. Mental modeling is …
Simulation Of The Interaction Between Striated Muscle Unc-45 And Transcription Factor Gata-4, Drake Alexander Duncan
Simulation Of The Interaction Between Striated Muscle Unc-45 And Transcription Factor Gata-4, Drake Alexander Duncan
Electronic Theses and Dissertations
Striated Muscle UNC-45, also known as UNC-45b, is an important protein that acts as a chaperone for myosin in cardiac and skeletal muscles, binding to myosin at its C-terminal UCS domain and regulating its assembly into thick filaments and sarcomeric structures. The UCS domain contains a large loop that is believed to be the first point of interaction between myosin and UNC-45b. GATA-4 is an essential transcription factor that facilitates transcription of several genes in cardiac development, particularly alpha-heavy chain myosin in heart tissue. Recently, studies have shown that there is interaction of GATA-4 with UNC-45b and that GATA-4 binds …
Std Prevention: An Educational Intervention For Exotic Dancers, Maria Delurdes Dehoyos
Std Prevention: An Educational Intervention For Exotic Dancers, Maria Delurdes Dehoyos
Electronic Theses and Dissertations
The Centers for Disease Control and prevention reported nearly 2.3 million STD cases diagnosed in 2017, and the number is continuing to rise. San Antonio, Texas, is ranked third in the state of Texas with the highest STD rates and leading in the state with congenital syphilis. There is an increased risk for contracting STDs working in the sex industry. There are little to no studies pertaining to any educational interventions offered to exotic dancers to increase personal knowledge on STDs. This research has focused on an educational intervention offered by a nurse practitioner to exotic dancers in two adults-only …
Analysis Of Metabolites And Therapeutics For Toxic Inhaled Agent Exposure, Abigail Bemah Donkor
Analysis Of Metabolites And Therapeutics For Toxic Inhaled Agent Exposure, Abigail Bemah Donkor
Electronic Theses and Dissertations
The inhalation of toxic inhaled agents (TIAs) such as methyl isocyanate and cyanide can compromise an individual’s general health due to their extremely toxic nature. Nonetheless, these gases are used extensively in the electronics, chemical, welding, electroplating industries, etc., increasing the risk of exposure to both civilians and industrial workers. It is therefore very crucial to develop analytical methods for TIA metabolites and therapeutic agents. Methyl isocyanate (MIC), an intermediate in the synthesis of carbamate pesticides is a toxic industrial chemical that causes irritation and damage to the eyes, respiratory tracts, and skin. Due to its reactivity with proteins, protein …
Spatial And Temporal Patterns Of Sympatric Bobcats (Lynx Rufus) And Coyotes (Canis Latrans) In An Agricultural Landscape, Marlin M. Dart
Spatial And Temporal Patterns Of Sympatric Bobcats (Lynx Rufus) And Coyotes (Canis Latrans) In An Agricultural Landscape, Marlin M. Dart
Electronic Theses and Dissertations
Bobcat (Lynx rufus) populations experienced declines in the Midwest during the 20th century due to land conversion for agriculture and over exploitation and were practically nonexistent in areas by the 1970-80s. Populations have been recovering following changes in land-use practices and habitat improvement. Eastern South Dakota was closed to bobcat harvest in 1977 but reopened in 2012 to select counties. Bobcats are elusive, have large home ranges, and occur at low densities, making monitoring their populations difficult. Camera trapping is an effective tool for monitoring elusive carnivores but can be burdened by low detection rates. Researchers often employ …
Pheasant Ecology In An Agricultural Landscape Of South Dakota, Sprih Harsh
Pheasant Ecology In An Agricultural Landscape Of South Dakota, Sprih Harsh
Electronic Theses and Dissertations
Habitat loss and fragmentation are the greatest threats to wildlife conservation. Grasslands are among the most threatened ecosystems worldwide. The large-scale conversion of North American grasslands to cultivation has been strongly associated with declines of grassland bird populations. The ring-necked pheasant (Phasianus colchicus) is a common grassland bird which is negatively impacted by the conversion of grassland to cropland. Though pheasants are non-native to South Dakota, they have become naturalized in most of the state. However, with increases in agricultural intensification in South Dakota, indices of pheasant abundance from brood route surveys suggest that pheasant populations have declined to historically …
Comparison Of Software Packages For Detecting Differentially Expressed Genes From Single-Sample Rna-Seq Data, Rong Zhou
Electronic Theses and Dissertations
RNA-sequencing (RNA-seq) has rapidly become the tool in many genome-wide transcriptomic studies. It provides a way to understand the RNA environment of cells in different physiological or pathological states to determine how cells respond to these changes. RNA-seq provides quantitative information about the abundance of different RNA species present in a given sample. If the difference or change observed in the read counts or expression level between two experimental conditions is statistically significant, the gene is declared as differentially expressed. A large number of methods for detecting differentially expressed genes (DEGs) with RNA-seq have been developed, such as the methods …
An Evaluation Of The Bighorn Sheep Population In Badlands National Park, Austin J. Wieseler
An Evaluation Of The Bighorn Sheep Population In Badlands National Park, Austin J. Wieseler
Electronic Theses and Dissertations
Within the last century, bighorn sheep (Ovis canadensis) in the badlands ecosystem of western South Dakota have been subjected to complete extirpation, reintroduction, disease die-offs, genetic bottlenecking, and population augmentation. Subsequently, the population in Badlands National Park (BNP) appears to have recovered, but it was unknown to what degree past events had influenced the population. From 2017-2019, we conducted research on 5 subherds within 2 management units in BNP to 1) survey for the presence of respiratory pathogens and estimate the prevalence of other potentially infectious diseases; 2) assess adult and lamb survival and cause-specific mortality; 3) estimate population size …
Understanding Patterns And Functional Impacts Of An Invasive Tree And Its Biological Control In A Riparian System, Annie L. Henry
Understanding Patterns And Functional Impacts Of An Invasive Tree And Its Biological Control In A Riparian System, Annie L. Henry
Electronic Theses and Dissertations
Invasive species have become an inextricable part of the landscape, particularly in riparian plant communities, and removal is often a key component of restoration programs. Biological control (biocontrol) is a method of removal that is often both efficient and effective. However, the impact of biocontrol on target species and indirect effects from invasive species removal can be hard to predict. While monitoring the impact of invasive species removal usually involves some species-based assessment such as changes in diversity, historically dominant species or native species, these strategies do not typically provide insight into the mechanisms underlying plant community response to removal. …