Life Sciences Commons^™

Automated Tree Mortality Detection Using Ubiquitously Available Public Data, Michael T. Huggins

Master's Theses

Understanding the dynamic interplay between fire severity, topography, and tree mortality, is crucial for predicting future forest dynamics and enhancing resilience against climate change-induced wildfire regimes. This thesis develops a multi-sensor approach for automated estimation of tree mortality, then applies it to examine trends in tree mortality over a six-year period across a fire affected study site in the Trinity River basin in Northern California. The Random Forest model uses publicly available USGS 3D Elevation Program Lidar (3DEP) and NAIP imagery as inputs and is likely to be easily adaptable to other landscapes. The model had a Receiver Operating Characteristic …

Literature Review Nature-Based Art Therapy Exploring Connections And Relationships, Janell Lopez-Curtis

Expressive Therapies Capstone Theses

Art therapy is a modality used in clinical psychotherapy. It is supported through both quantitative and qualitative research. Branching out from art therapy is nature-based art therapy. This branch of expressive therapies holds the potential to be beneficial as art therapy due to the interconnected access to the scientific fields of ecology, ecopsychology, art therapy, expressive therapies, and other nature-based therapeutic activities; this includes intersectionality in ecological theories such as ecofeminism and deep ecology as well. Through an exploration of literature, this paper will provide definitions and theory-based support through reviewing clinical psychotherapy, evidence-based practices, and art therapy theories. The …

Factors Associated With Acoustic Bat Presence During Spring Emergence In The Appalachian Mountains Of Western Virginia, Emily Kirk Pody

Theses, Dissertations and Capstones

Studies of threats that bats face during hibernation have increased in response to white-nose syndrome (WNS), a fungal disease that has ravaged North American bat populations. However, impacts of WNS on bat ecology during spring emergence, when bats are potentially recovering from infection and allocating resources for reproduction, is relatively understudied. As more bat species become listed at the federal and state level, the need to understand the factors associated with spring emergence is critical for improving conservation guidelines and habitat management practices. Acoustic monitoring is an efficient method for monitoring bat presence for prolonged periods of time, giving biologists …

Addressing Water Hyacinth (Pontederia Crassipes) Impacts On Aquatic Biota In Lake Okeechobee, Joseph Salerno

All HCAS Student Capstones, Theses, and Dissertations

The incursion of water hyacinth, Pontederia crassipes in Lake Okeechobee has resulted in management systems to be implemented to reduce the coverage of the invasive macrophyte. Its residence in the Lake Okeechobee ecosystem and the effects it has on organisms in the lake, whether it be positive or harmful is unknown. This study attempted to assess the potential effects that water hyacinth has on aquatic biota in Lake Okeechobee. Biotic data were collected on open water, water hyacinth covered, and native vegetation covered habitats via hook-and-line fishing, electrofishing, baited minnow traps, and the sampling of plant roots over a thirteen-month …

Connecting Social And Ecological Systems In Small-Scale Fisheries In The Philippines, Sara Eisler Marriott

Dissertations

Nearly 50% of all marine fish capture in the Philippines is from artisanal fisheries, most of which is un- or under-reported. As in many emerging nations around the world, the Philippines cannot fully address overfishing by managing only half of the catch that comes from commercial fisheries. Marine reserves are a popular governance strategy for conservation and of growing interest for fisheries management. Many marine reserves in the Philippines, however, are not considered effective. In 2014, Rare, an international NGO, implemented a community-based management program to increase the effectiveness of the marine reserves, and while it found biomass increased, there …

The Effects Of Habitat Isolation On Fine-Scale Genetic And Geographic Structure Of Populations Of Two Threatened Endemic Insects In Southern Nevada, Pseudocotalpa Giulianii And Icaricia Shasta Charlestonensis, Kristen Tovar

UNLV Theses, Dissertations, Professional Papers, and Capstones

Assessing the role geographic isolation and ecological specialization have on phylogeographic patterns contributes to our understanding of the evolutionary history of a species and the processes that erode genetic diversity. I used mitochondrial and nuclear genomic sequences to assess whether habitat isolation has shaped the fine-scale patterns of present-day genetic structure and diversity in two threatened insect species endemic to southern Nevada. Pseudocotalpa giulianii (Coleoptera; Scarabaeidae) is a dune obligate scarab beetle endemic to only two small, isolated sand dunes in Nye County, Nevada, with a usable habitat of less than 4.2 km sq that is impacted by on-going degradation. …

Competing Behaviors Of Thermoregulation And Ambush Foraging In The Timber Rattlesnake (Crotalus Horridus Horridus): A Mechanistic Assessment Of Thermal Conduction, Larry K. Kamees

Graduate Theses and Dissertations

The interaction between the biophysical environment and ectotherm morphology elicits behaviors designed to maintain internal body temperature (Tb) within a range that promotes physiological functions. The short-term requirements of mass (energy requirements) and heat balance are subject to tradeoffs imposed by the organisms current physiological (heat and mass budgets) and environmental (biophysical, demographic, social, and predation) constraints and available resources. In temperate forests, extreme temperatures are common in summer even with intermittent sun exposure due to dense canopy cover. In Spring and Fall, temperatures can range from below freezing to 35 ℃ in 24 hrs. An ambush predator like the …

Making Forests, Making Communities: An Ethnography Of Reforestation In Monteverde, Costa Rica, Megan Brown

Anthropology Theses and Dissertations

Reforestation is not just planting trees in the ground. More than net increase in forest cover, reforestation is a complex political endeavor undertaken by both humans and non-humans and a popular climate change mitigation tactic. However, little research has examined the dynamics between selection of specific reforestation strategies, health, and community resilience, particularly with attention to entanglements between the lives of both human and non-human forest dwellers. This ethnographic work, based on six months of in-person fieldwork and six months of digital ethnography, examines reforestation and forest relations in Costa Rica’s Monte Verde zone, a region which experienced widespread deforestation, …

Ecological Changes Of The Lower Niobrara River Valley And Lewis And Clark Lake Delta From Past To Present, Madalyn Christine Bollig

Dissertations and Theses

Over half of the world’s large river systems are impacted by dams. These may prevent sediment flow downstream, resulting in accumulation in the upstream reservoir. On the Missouri River, deltas and associated backwater-affected areas occur in nine locations across six reservoirs. One of these, the Lewis and Clark Lake delta-backwater, is influenced by sediment inputs from both the Missouri River and the Niobrara River. While the extension of the prograding delta into the reservoir has been well documented, there has been little research on upstream (backwater) effects of the delta on the lower Niobrara River. This study examined ecological changes …

Fine Scale Mapping Of Laurentian Mixed Forest Natural Habitat Communities Using Multispectral Naip And Uav Datasets Combined With Machine Learning Methods, Parth P. Bhatt

Dissertations, Master's Theses and Master's Reports

Natural habitat communities are an important element of any forest ecosystem. Mapping and monitoring Laurentian Mixed Forest natural communities using high spatial resolution imagery is vital for management and conservation purposes. This study developed integrated spatial, spectral and Machine Learning (ML) approaches for mapping complex vegetation communities. The study utilized ultra-high and high spatial resolution National Agriculture Imagery Program (NAIP) and Unmanned Aerial Vehicle (UAV) datasets, and Digital Elevation Model (DEM). Complex natural vegetation community habitats in the Laurentian Mixed Forest of the Upper Midwest. A detailed workflow is presented to effectively process UAV imageries in a dense forest environment …

Body Mass And Body Condition Variation Of Mallards (Anas Platyrhynchos) Within And Among Winters Within The Lower Mississippi Alluvial Valley, John Thompson Veon

Graduate Theses and Dissertations

Most North American waterfowl overwinter in southern North America before migrating back to breeding grounds in the northern US and Canada. These species face the challenge of needing to maintain or increase their body mass during an environmentally difficult winter period. Successful body mass maintenance during the winter period has major ramifications not only for their winter survival but for their fitness across the entire year. Recent research in Europe and the western United States suggests that the body mass of mallards (Anas platyrhynchos) has increased from the late 1960s to early 2000s. However, the factors responsible for increases in …

Machine Learning For Species Habitat Analysis, Abigail Lavallin

USF Tampa Graduate Theses and Dissertations

Management and conservation initiatives will always be controlled by finite resources, whether financialor temporal. Understanding a species’ spatial ecology, and how its requirements vary across habitats and locations is key to a successful species management plan. During recent decades, it has been noted how many species populations have declined, despite conservation practices working to increase their numbers. The most prevalent impacts affecting fauna populations have come from anthropogenic change in the form of habitat loss and destruction, along with fragmentation, and global climate change. There is a clear need for management practices to now operate on an entire landscape instead …

A Year In Syntropy: Exploring Syntropic Agriculture, Ajah Eills

College Honors Program

Syntropic agriculture is a form of sustainable agriculture that originated in Brazil around 25 years ago. Although it has since spread throughout Brazil and Australia, there has yet to be a comprehensive study of the driving scientific principles behind syntropy. For my thesis, I conducted literature research and interviews with farmers, with the goal of describing the ecological principles on which syntropy is based, including its primary goal to improve soil health. Much of my thesis contrasted syntropic agriculture with conventional agriculture as practiced in the United States today, but I also explored the differences between syntropic agriculture and other …

Distributions And Habitat Associations Of Blue Point Pyrgulopsis And Blue Point Tryonia, Chenoa Janine Wilcox

UNLV Theses, Dissertations, Professional Papers, and Capstones

Springsnails and other crenophilic species are often of conservation concern due to endemism, narrow habitat requirements, and susceptibility to habitat degradation. Because there is a distinct lack of natural history information for many of these organisms, management of species that are of concern is often based on data from non-target species related to the species of interest. In this thesis, I provide background information regarding springsnails in western North America (Chapter 1), describe a study investigating the distribution and habitat associations of two springsnails endemic to a single spring (Chapter 2), and provide supplemental information on habitat characteristics associated with …

Comparison Of Low-Cost Commercial Unpiloted Digital Aerial Photogrammetry To Airborne Laser Scanning Across Multiple Forest Types In California, James Edward Lamping

Cal Poly Humboldt theses and projects

Science-based forest management requires quantitative information about forest attributes traditionally collected via sampled field plots in a forest inventory program. Remote sensing tools, such as active three-dimensional (3D) Light Detection and Ranging (lidar), are increasingly utilized to supplement and even replace field-based forest inventories. However, lidar remains cost prohibitive for smaller areas and repeat measurement, often limiting its use to single acquisitions of large contiguous areas. Recent advancements in unpiloted aerial systems (UAS), digital aerial photogrammetry (DAP) and high precision global positioning systems (HPGPS) have the potential to provide low-cost time and place flexible 3D data to support forest inventory …

Impact Of Disturbance Regimes On Community And Landscape Biodiversity In Atlantic Coastal Pine Barren Ecoregion Streams, Sean T. Mccanty

Graduate Doctoral Dissertations

Streams are dynamic systems shaped by geographic location, hydrology, riparian vegetation, and in-stream habitat. Furthermore, ecosystem disturbance plays a major role in structuring stream communities and ecosystem processes. Disturbances include natural occurrences, such as flooding, drought, and fire events and anthropogenic disturbances such as land use changes, damming, and pollution. Agricultural use acts as a press disturbance regime, homogenizing the surrounding landscape and simplifying in-stream habitat, leaving legacy effects after farming ceases. Active restoration is intended to ameliorate these effects by reintroducing variation, with the goal of shifting the ecosystem into a more diverse and natural state. The act of …

The Effects Of Low-Level Pharmaceuticals On Stream Biofilm Structure And Function Across A Land-Use Gradient In Streams Of The Huron River Watershed, Elizabeth Mae Stover

Master's Theses and Doctoral Dissertations

Pharmaceuticals and personal care products (PPCPs) are a contaminant class of worldwide concern. Their environmental omnipresence indicates they may be a potential source of global change, and ecosystem-scale impacts at non-lethal levels have not been fully explored. We used stream biofilms to assess ecosystem responses to PPCPs. Biofilms were cultivated in streams draining areas of different land use and then exposed to triclosan, diphenhydramine, and sulfamethoxazole-trimethoprim treatments. We found evidence that low levels of these PPCPs affected some, but not all, aspects of biofilm processes and bacterial community composition. Bacterial carbon uptake was reduced (p = 0.06) and we found …

Mammal Species Inventory Using Various Trapping Methods In Zone 4 Of Billy Barquedier National Park, Belize During Rainy Season, Mersady Redding

Animal Science Undergraduate Honors Theses

Belize is a small country, but it is extremely ecologically diverse. Based on the few studies conducted in Belize, the abundance of mammals is low but diversity is high. Particular findings note the number and identity of species differed between four sites in the Maya Mountains of Belize, indicating that a data set from a single site is not representative of the Neotropical region. Insufficient data is available to estimate current species richness of many areas in Belize, including Billy Barquedier National Park (BBNP). The objective of this study was to explore trapping and documentation methods of terrestrial mammals in …

Management Recommendations For Ecological Restoration On The Little River Parcel, Maya Sady Partain, Garitt Mathews

Environmental Science & Management Senior Capstones

Ecological restoration is an important aspect of land management. Data collection and ongoing monitoring help inform restoration decisions and determine their effectiveness. In this project, we followed a monitoring protocol provided by the Trinidad Coastal Land Trust to assess the 2019 status of their Little River parcel, a fifteen-acre area near the mouth of Little River in Trinidad, California. We performed a site analysis of invasive plant species and recorded their extent and location, as well as noting other observations of the ecology, topography, and biology of the site. After making our observations, we recommended land management methods woven together …

The Value Of Animal Behaviour As A Bio-Indicator Of Restoration Quality, Floyd Holmes

Theses: Doctorates and Masters

Woodland restoration is a complex endeavour, and restoration ecology as a scientific discipline requires constant re-assessments and adjustments if it is to improve outcomes and better provide for biodiversity. The promise of effective restoration is often used to justify destructive processes that affect many of the world’s ecosystems. It is therefore imperative that those promises can be met, which comes down to restoration ecologists’ and land managers’ capacity to predict and facilitate desirable ecological changes in a timely and socio-economically responsible manner. As perspectives have changed, and knowledge has been gained over the past few decades there have been several …

The Off Season: Masculinities, Rurality, And Family Ties In Alaska Commercial Fishing, Cruz Morey

Senior Theses

This study explores the intersections of masculinity, rurality, the family, and ecology through the experiences of commercial fishermen in Alaska. By understanding the plurality of masculinities and how men operate within a rural space, this study investigates the relationship between the masculine rural and the rural masculine and how that relationship pertains to commercial fishermen. This study examines existing discourse about Alaska and the masculinity of commercial fishermen in light of the concepts of cultural and economic capital, as well as local ecological knowledge (LEK). It further examines how fishermen describe their experiences in the industry as ones that are …

Sensitivity Analysis Of Wolf Restoration In Yellowstone Nation Park Using Omnivory Models, Derek Fields

Theses, Dissertations and Capstones

In the ever-changing world of ecology, species survival often depends on approximations and measurements taken by biologists. These approximations help to ensure and predict the future of that given species. Our ecological community of interest involves wolves, elk, and berry producing shrubs within Yellowstone National Park. We use two different systems of ordinary differential equations, each increasing in complexity to model our community. In each model the predator (wolves) and consumers (elk) compete for a common resource, berry producing shrubs. We call this consumption of resources, from more than one trophic level, omnivory. We approximate each system with parameter values …

Ecology Of Two Reintroduced Black Bear Populations In The Central Appalachians, Sean Mccarthy Murphy

Theses and Dissertations--Animal and Food Sciences

Reintroduced populations are vulnerable to demographic and environmental stochasticity, deleterious genetic effects, and reduced population fitness, all of which can increase extinction probability. Population viability is principle to determining the status of reintroduced populations and for guiding management decisions. To attempt to reestablish black bear (Ursus americanus) populations in the central Appalachians, two reintroductions using small founder groups occurred during the 1990s in the Big South Fork area along the Kentucky-Tennessee border (BSF) and in the Jefferson National Forest along the Kentucky-Virginia border (KVP). My objectives were to estimate demographic and genetic parameters, and to evaluate long-term viability …

Seasonal Habitat Selection Of The North American Porcupine (Erethizon Dorsatum) In A Coastal Dune Forest, Cara L. Appel

Cal Poly Humboldt theses and projects

Wildlife-habitat relationship studies are important for understanding the factors that determine where species occur in space and time. Habitat selection by generalist species should be studied on fine spatial and temporal scales to avoid masking important differences between seasons, localities, or orders of selection. I conducted the first study of habitat use and general ecology of North American porcupines (Erethizon dorsatum) in a coastal dune environment. Specifically, I assessed changes in body mass, home range size, and habitat selection in relation to the potential for seasonal nutritional and survival bottlenecks as reported elsewhere. Although they are considered generalists, …

Insomniac Of The Soil: A Collection Of Poetry And Essays, Sarah E. Golibart

Senior Honors Projects, 2010-2019

“Insomniac of the Soil” is a homage to a landscape that has deeply informed Sarah Golibart's life and her artistic voice – the tidewater flatlands of Virginia’s Chesapeake Bay peninsula where her family lives and where Golibart has worked on farms since high school. Both her poems and essays are earthy, imagistic, and grounded – quite literally – in the soil as well as in a sensibility of ecological ethics and sustainability. “Insomniac of the Soil” is also a love song to the fervent and fallow cycles of the soil.

Provisioning And Its Effects On The Social Interactions Of Tibetan Macaques (Macaca Thibetana) At Mt. Huangshan, China, Brianna I. Schnepel

All Master's Theses

The dispersal patterns of food resources has a significant effect on the composition of primate groups and social interactions within those groups. Humans often alter the dispersal of food. Non-humans often use affiliative behaviors to elicit tolerance or support from other group members. I investigated whether provisioned food resources alter the social interactions and group dynamics of Macaca thibetana. All-occurrence sampling and scan sampling were used for data recorded by camera traps. Trail-cameras were placed at six locations that contain natural and human food resources and recorded 60-second videos. Social behavior and proximity of the monkeys were recorded. I …

Evaluating The Utility Of Beaver Reintroduction Programs For Enhancing Habitat For Rainbow Trout And Steelhead, Jonathan Rodger Hegna

All Master's Theses

Beaver reintroduction programs are increasingly being viewed as a way to enhance salmonid habitat and production. However, the actual effectiveness of using beavers as a habitat enhancement tool for ESA listed steelhead Oncorhynchus mykiss populations is unknown. We examined the type of habitat, at both the microhabitat and mesohabitat levels, preferred by steelhead in three small streams in the upper Yakima Basin, WA through standard snorkel surveys and habitat measurements. Our results suggest that steelhead in small streams strongly prefer (relative to availability) microhabitats that have deeper water(> 30 cm), slow stream velocities(< 0 .05 mis), and complex cover types. Habitat partitioning among the size-classes (small< 50 mm, medium 50-90 mm, large> 90 mm total length, TL) principally operated …

Ecology Of Glacial Relict Fishes In South Dakota's Sandhills Region, Eli Felts

Electronic Theses and Dissertations

Native stream fish zoogeography has changed substantially across North America during the last century as habitat degradation, stream fragmentation and introductions of nonnative species have led to numerous extinctions, extirpations and altered distributions. Insufficient information regarding imperiled species often results in reactive, rather than proactive, management, and knowledge of species status and ecology is critical in identifying conservation priorities. South Dakota populations of three dace species (northern redbelly dace Chrosomus eos, finescale dace Chrosomus neogaeus, and pearl dace Margariscus margarita) are relict of Pleistocene Glaciation and are isolated from the northern core of their distribution, but little information exists regarding …

A Reexamination Of The Eastern Collared Lizard (Crotaphytus Collaris Collaris) In Arkansas, Ashley A. Grimsley

Graduate Theses and Dissertations

Loss of suitable habitat is a threat to species worldwide. Habitat destruction, including loss, change, and fragmentation of habitat, is the leading cause of species extinction. Eastern collared lizards (Crotaphytus collaris collaris) are habitat specialists on glades. Both C. c. collaris and glade habitats are rare and of special concern in the state of Arkansas. Many glade populations have already been extirpated in the Ozarks of Arkansas and Missouri. Increasing knowledge of the distribution, habitat structure, and population dynamics of C. c. collaris is important to ensure the survival of this species in Arkansas.

A literature review of …

Investigating Three Decades Of Vegetation Change In A Mojave Desert Mountain Range, Chris Lee Roberts

UNLV Theses, Dissertations, Professional Papers, and Capstones

This project is a vegetation change study spanning 29 years in the Newberry Mountains of Southern Nevada. Long term monitoring data are crucial for understanding the effects of climate change on vegetation dynamics. Successful management intervention in vegetation change will require identification of early indicator plant species and their responses to climatic cues. This project is one of the oldest comparisons of resurveyed Mojave vegetation community plots with repeatable methodology and the longest survey interval reported for the southeastern Mojave Desert. 103 plots were relocated and resurveyed based on data methods in Jim Holland's thesis titled "A Vegetative Analysis of …