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2023

Biodiversity

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Full-Text Articles in Life Sciences

Genomic Analysis Reveals New Species And Subspecies Of Butterflies, Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Nick V. Grishin Dec 2023

Genomic Analysis Reveals New Species And Subspecies Of Butterflies, Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

Large-scale genomic sequencing of butterfly taxa reveals new findings that are presented here. While we focus on detecting species by comparative genomics and define subspecies as groups of populations genetically differentiated from each other but not as strongly as species (that is, subspecies as species in the making), we report other adjustments to butterfly classification. As a result, 4 subgenera, 11 species, and 6 subspecies are proposed as new. New subgenera are: Rapis Grishin, subgen. n. (type species Papilio rapae Linnaeus, 1758, genus Pieris Schrank, 1801) in Pieridae Swainson, 1820 and Callitera Grishin, subgen. n. (type species Eurygona? pulcherrima …


Reassessment Of Amblyscirtes Hegon (Hesperiidae) As A Complex Of Four Distinct Species Revealed By Genomic Analysis, Harry Pavulaan, Ricky Patterson, Nick V. Grishin Dec 2023

Reassessment Of Amblyscirtes Hegon (Hesperiidae) As A Complex Of Four Distinct Species Revealed By Genomic Analysis, Harry Pavulaan, Ricky Patterson, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

After the discovery of a unique phenotype in the southern United States with a different ventral ground color than nominotypical Amblyscirtes hegon (Scudder, 1863), which occurs in the northeastern United States, genomic analysis revealed that A. hegon is a species complex. Phenotypic, genitalic, and genomic differences of the complex are presented here. Four species are identified: A. hegon; A. nemoris (W. H. Edwards, 1864), stat. rest.; A. matheri Patterson, Pavulaan & Grishin, sp. n. (TL: USA, Mississippi, Warren County); and A. gelidus Grishin, Patterson & Pavulaan, sp. n. (TL: USA, Michigan, Van Buren County).


Descriptions Of One Hundred New Species Of Hesperiidae, Jing Zhang, Qian Cong, Nick V. Grishin Dec 2023

Descriptions Of One Hundred New Species Of Hesperiidae, Jing Zhang, Qian Cong, Nick V. Grishin

Insecta Mundi

A century and a half since the time of Hewitson, we are experiencing a renaissance in species discovery fueled by whole genome sequencing. A large-scale genomic analysis of Hesperiidae Latreille, 1809 (Lepidoptera), including primary type specimens, reveals a deluge of species new to science. One hundred of them (one in a new genus) are described here from the New World (type localities are given in parenthesis): Drephalys (Drephalys) diovalis Grishin, new species (Ecuador: Napo), Euriphellus panador Grishin, new species (Ecuador: Esmeraldas), Euriphellus panamicus Grishin, new species (Panama: Panama), Cecropterus (Thorybes) viridissimus Grishin, new species (Ecuador: Zamora-Chinchipe), …


The Role Of Governance In Rewilding The United States To Stem The Biodiversity Crisis, Shelby C. Carlson, John A. Vucetich, L Mark Elbroch, Shelby Perry, Lydia A. Roe, Tom Butler, Jeremy T. Bruskotter Dec 2023

The Role Of Governance In Rewilding The United States To Stem The Biodiversity Crisis, Shelby C. Carlson, John A. Vucetich, L Mark Elbroch, Shelby Perry, Lydia A. Roe, Tom Butler, Jeremy T. Bruskotter

Michigan Tech Publications, Part 2

A critical but underattended feature of the biodiversity crisis is the contraction of geographic range experienced by most studied terrestrial vertebrates. In the United States, the primary policy tool for mitigating the biodiversity crisis is a federal law, the Endangered Species Act (ESA). For the past two decades, the federal agencies that administer the ESA have interpreted the act in a manner that precludes treating this geographic element of the crisis. Therefore, the burden of mitigating the biodiversity crisis largely falls on wildlife agencies within state government, which are obligated to operate on behalf of the interests of their constituents. …


Species Richness Of Moths In Parks Surrounded By Varying Levels Of ​Urbanization Around Nashville, Tennessee, Maxwell Stone, Allie Bennett Nov 2023

Species Richness Of Moths In Parks Surrounded By Varying Levels Of ​Urbanization Around Nashville, Tennessee, Maxwell Stone, Allie Bennett

Science University Research Symposium (SURS)

Moths can act as indicators of environmental wellness due to their pollution sensitivity and the complexity of biodiversity required to support their life cycles. Urbanization can impact the occurrence of moths in protected green spaces. Higher moth species richness was hypothesized to occur in parks surrounded by more rural areas. Three metropolitan parks were chosen in the Nashville area: downtown, within a suburban neighborhood, and in a rural area. Tree canopy cover and degree of impervious surfaces were assessed for each park and surrounding area using iTreeCanopy. Moths were attracted to a white sheet using a mercury vapor bulb, UV …


Butterfly Classification And Species Discovery Using Genomics, Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Nick V. Grishin Oct 2023

Butterfly Classification And Species Discovery Using Genomics, Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

Genomic sequencing of worldwide butterfly fauna followed by phylogenetic analysis of protein-coding genes informs butterfly classification throughout the taxonomic hierarchy, from families to species. As a rule, we attribute the same taxonomic rank to more prominent clades of comparable divergence (that is, at the same level in the tree). For species delimitation, we use criteria based on relative genetic differentiation and the extent of gene exchange between populations. We analyze the current taxonomic classification of butterflies in the light of genomic phylogenies and encounter clades that correspond to yet unnamed taxa. As a result, 11 tribes, 33 subtribes, 2 genera, …


Flujos De Servicios Ecosistémicos En Un Área Marina Protegida Del Atlántico Sur: Perspectivas Desde El Análisis De La Teoría De Redes, Mitch Porter Oct 2023

Flujos De Servicios Ecosistémicos En Un Área Marina Protegida Del Atlántico Sur: Perspectivas Desde El Análisis De La Teoría De Redes, Mitch Porter

Independent Study Project (ISP) Collection

En cuestiones de gestión de áreas protegidas, los servicios ecosistémicos se tienen cada vez más en cuenta junto con la conservación de la biodiversidad. Sin embargo, las decisiones que se toman sobre la conservación de los servicios ecosistémicos no suelen incluir los posibles efectos en cascada de la pérdida de biodiversidad sobre la provisión de servicios. Los conocimientos de la teoría de redes y los estudios de robustez pueden proporcionar una metodología para evaluar la vulnerabilidad de estos servicios frente la estructura trófica de los ecosistemas que los proveen. A través de una serie de simulaciones de extinción para la …


Description Of Three New Acanthocinini (Coleoptera: Cerambycidae: Lamiinae) Species From Ecuador, Josef Vlasak, Antonio Santos-Silva Jun 2023

Description Of Three New Acanthocinini (Coleoptera: Cerambycidae: Lamiinae) Species From Ecuador, Josef Vlasak, Antonio Santos-Silva

Insecta Mundi

Three new species of Acanthocinini (Coleoptera: Cerambycidae: Lamiinae) are described from Napo province, Ecuador: Anisopodus micromaculatus new species; Parabaryssinus katerinae new species; and Paracleodoxus minutus new species. A key to species of Paracleodoxus Monné and Monné (2010) is provided.

The study of specimens collected by the first author during his stay in Ecuador in 2022 allows us to describe three new species of Acanthocinini (Coleoptera: Cerambycidae). The biodiversity of this relatively small country has been surprising due to the large number of species that were still unknown. Napo province, where the specimens of the new species were …


Arthropod Diversity In Phytotelmata Of Calathea Capitata (Zingiberales; Marantaceae) Host Plants From Peru, Divya Dendi, Timo Förster, Caroline S. Chaboo Jun 2023

Arthropod Diversity In Phytotelmata Of Calathea Capitata (Zingiberales; Marantaceae) Host Plants From Peru, Divya Dendi, Timo Förster, Caroline S. Chaboo

Department of Entomology: Faculty Publications

Cryptic habitats are often overlooked in biodiversity surveys. Phytotelmata, or plant pools, are one type of cryptic habitat that supports diverse fauna in a miniature ecosystem. This study surveys the arthropod community of two types of phytotelmata, bracts and leaf rolls, on a single species, Calathea capitata (Ruiz and Pav.) Lindl. (Zingiberales: Marantaceae), from one Amazon site in Peru. Specimens were collected from eight bracts and eight leaf rolls. A total of 55 arthropods (36 adults, 19 juveniles) were found in both phytotelmata types. In the bract samples were found: spiders (Araneae: Corinnidae), beetles (Coleoptera: Carabidae, Erotylidae, Staphylindae), flies (Diptera: …


A New Genus And Sixteen New Species Of False Click Beetles (Coleoptera: Eucnemidae) Described From The Heredia Province Of Costa Rica With Several Additional Records From The Osa Peninsula And Panama, Robert L. Otto, Jyrki Muona, Jim Córdoba-Alfaro May 2023

A New Genus And Sixteen New Species Of False Click Beetles (Coleoptera: Eucnemidae) Described From The Heredia Province Of Costa Rica With Several Additional Records From The Osa Peninsula And Panama, Robert L. Otto, Jyrki Muona, Jim Córdoba-Alfaro

Insecta Mundi

More than 1300 specimens of Eucnemidae collected from Heredia Province in Costa Rica during the 1990s Arthropods of La Selva (ALAS) survey were studied from 2018 through 2022. One new genus of false click beetle, Absensiugum Otto, Muona and Córdoba-Alfaro, is described. Nematodes teres Horn, from the Ne­arctic and Caribbean regions, is transferred to this new genus to form Absensiugum teres, new combination. Sixteen new species of false click beetle (Coleoptera: Eucnemidae) are described from Costa Rica. These new species are: Adelothyreus brevis, Adelothyreus costaricensis, Adelothyreus totus, Quirsfeldia stethonoides, Lacus pectinatus, Maelodrus costaricensis, …


A Taxonomic List Of The Old World Genera In The Subfamily Hesperiinae (Hesperiidae) Arranged Into Tribes, Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Nick V. Grishin May 2023

A Taxonomic List Of The Old World Genera In The Subfamily Hesperiinae (Hesperiidae) Arranged Into Tribes, Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

A taxonomic list of valid genera in the subfamily Hesperiinae from the Old World assigned to tribes is provided. This list is based on phylogenetic analysis of genomic sequence data complemented by morphological considerations. As a result, there are no incertae sedis non-fossil genera in the family Hesperiidae.


Temporal Changes In Biological Community Structure In Response To Wetland Restoration: A Study Based On Amphibians And Reptiles, Kayla Keith May 2023

Temporal Changes In Biological Community Structure In Response To Wetland Restoration: A Study Based On Amphibians And Reptiles, Kayla Keith

Honors Program Theses and Projects

Wetland degradation is a serious environmental concern worldwide. In the United States, over half of the wetland ecosystems have degraded since 1780, which can have numerous, lasting consequences with negative outcomes on ecosystems and human society alike. Ecological restoration can regain both the lost wetland acreage and functions. Both global and national scale interests in ecological restoration have trickled down, which has kindled the local and regional natural resource managers and conservation authorities to invest in restoration. Consequently, large-scale wetland restoration projects are now underway in southeastern Massachusetts, which has coincided with a decline in commercial cranberry farming in the …


A New State Record Of Eucera (Xenoglossa) Kansensis (Hymenoptera: Apidae) In South Dakota, Usa, Louis S. Hesler, Eric A. Beckendorf, Abigail P. Martens, Paul J. Johnson Apr 2023

A New State Record Of Eucera (Xenoglossa) Kansensis (Hymenoptera: Apidae) In South Dakota, Usa, Louis S. Hesler, Eric A. Beckendorf, Abigail P. Martens, Paul J. Johnson

Insecta Mundi

Eucera (Xenoglossa) kansensis (Cockerell, 1905) (Hymenoptera: Apidae) is newly recorded for the state of South Dakota, USA. The bees were sampled predominantly with blue vane traps, and E. kansensis was associated with a wide range of habitats that did not include its primary floral resources of Cucurbita L. and Ipomoea L. Further study is warranted to determine the basis for the association of E. kansensis within the wide range of habitats in this study.

The longhorn bee tribe Eucerini (Hymenoptera: Apidae) is a widespread and diverse group of solitary bees that includes important pollinators of both wild and …


Scale-Dependent Spatial Ecology Of Paleotropical Leaf Litter Ants (Hymenoptera: Formicidae), Lillian Germeroth, Theodore Sumnicht, Robin M. Verble Apr 2023

Scale-Dependent Spatial Ecology Of Paleotropical Leaf Litter Ants (Hymenoptera: Formicidae), Lillian Germeroth, Theodore Sumnicht, Robin M. Verble

Biological Sciences Faculty Research & Creative Works

The Grain for Which an Observer Conducts a Study is an Important Determinant of its Outcome. Studies of Ants Have Considered Spatial Grains Spanning from Single Meters to Entire Forest Ecosystems and Found Patterns Related to Nutrient Availability, Leaf Litter Depth, Disturbance, and Forest Composition. Here, We Examine a Bornean Leaf Litter Ant Community at Small (1–4 M) and Large (50–250 M) Spatial Scales and Consider the Differences in Community Structure using Structured 1 M2 Quadrats Sampled Via Leaf Litter Sifting and Berlese Extraction. We Found that Small-Scale Patterns in Ant Abundance and Richness Did Not Spatially Auto correlate within …


Hydropower To The People: Implications Of A Comparative Macroinvertebrate Study On Either Side Of The Central Hidroeléctrica Topo In Tungurahua, Ecuador, Grace Mazur Apr 2023

Hydropower To The People: Implications Of A Comparative Macroinvertebrate Study On Either Side Of The Central Hidroeléctrica Topo In Tungurahua, Ecuador, Grace Mazur

Independent Study Project (ISP) Collection

This study uses macroinvertebrates as bioindicators to assess the water quality upstream and downstream of a hydroelectric project in Ecuador’s eastern cloud forest. Ecuador has increasingly turned to hydropower to supply its energy needs as pressure mounts to turn away from fossil fuels. This transition has been realized on the Río Topo, located in the province of Tungurahua. This study aims to determine how the Central Hidroeléctrica Topo (CHT), a diversion hydroelectric project (HEP) constructed on the Río Topo in the 2010s, has affected the water quality of the river. Samples were taken of benthic (bottom-dwelling) macroinvertebrates in the Río …


Regeneration Strategies And Forest Resilience To Changing Fire Regimes: Insights From A Goldilocks Model, Tanjona Ramiadantsoa, Zak Ratajczak, Monica G. Turner Mar 2023

Regeneration Strategies And Forest Resilience To Changing Fire Regimes: Insights From A Goldilocks Model, Tanjona Ramiadantsoa, Zak Ratajczak, Monica G. Turner

Aspen Bibliography

Disturbances are ubiquitous in ecological systems, and species have evolved a range of strategies to resist or rebound following disturbance. Understanding how the presence and complementarity of regeneration traits will affect community responses to disturbance is increasingly urgent as disturbance regimes shift beyond their historical ranges of variability. We define "disturbance niche" as a species' fitness across a range of disturbance sizes and frequencies that can reflect the fundamental or realized niche, that is, whether the species occurs alone or with other species. We developed a model of intermediate complexity (i.e., a Goldilocks model) to infer the disturbance niche. We …


Unveiling The Nexus: The Interdependence Of Animal Welfare, Environment & Sustainable Development, World Federation For Animals (Wfa) Mar 2023

Unveiling The Nexus: The Interdependence Of Animal Welfare, Environment & Sustainable Development, World Federation For Animals (Wfa)

Nexus – UNEP – Animal Welfare, Environment, Sustainable Development

On 2 March 2022, the UN Environment Assembly (UNEA) adopted the Animal Welfare - Environment - Sustainable Development Nexus Resolution. In this resolution, UNEA acknowledged that "animal welfare can contribute to addressing environmental challenges". UNEA further acknowledged animal welfare's contribution to "promoting the One Health approach and achieving the Sustainable Development Goals." To understand these links, UNEA requested the UN Environment Programme (UNEP) to analyse and produce a report for the next convening of UNEA on the nexus between animal welfare, the environment, and sustainable development. "Unveiling the Nexus: The interdependence of animal welfare, environment & sustainable development" illuminates the …


Additional Taxonomic Refinements Suggested By Genomic Analysis Of Butterflies, Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Paul A. Opler, Nick V. Grishin Feb 2023

Additional Taxonomic Refinements Suggested By Genomic Analysis Of Butterflies, Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Paul A. Opler, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

Comparative analyses of genomic data reveal further insights into the phylogeny and taxonomic classification of butterflies presented here. As a result, 2 new subgenera and 2 new species of Hesperiidae are described: Borna Grishin, subgen. n. (type species Godmania borincona Watson, 1937) and Lilla Grishin, subgen. n. (type species Choranthus lilliae Bell, 1931) of Choranthus Scudder, 1872, Cecropterus (Murgaria) markwalkeri Grishin, sp. n. (type locality in Mexico: Sonora), and Hedone yunga Grishin, sp. n. (type locality in Bolivia: Yungas, La Paz). The lectotype is designated for Aethilla toxeus Plötz, 1882. The type locality of Dion uza (Hewitson, 1877) is likely …


Ancyronyx Jhoanae Sp. Nov. (Coleoptera: Elmidae), A New Spider Riffle Beetle Species From Luzon, Philippines, And New Records For A. Tamaraw Freitag, 2013, Christalle Beatriz N. Seno, Hendrik Freitag Feb 2023

Ancyronyx Jhoanae Sp. Nov. (Coleoptera: Elmidae), A New Spider Riffle Beetle Species From Luzon, Philippines, And New Records For A. Tamaraw Freitag, 2013, Christalle Beatriz N. Seno, Hendrik Freitag

Biology Faculty Publications

Ancyronyx jhoanae sp. nov., a new species of genus Ancyronyx Erichson, 1847 from Luzon is described using an integrative taxonomic approach. Illustrations of habitus and diagnostic characters are provided. Molecular analysis of a fragment of the COI 5’-end was employed to support the morphological species concept. Differences from closely related species based on molecular and morphological data are discussed. First records of A. tamaraw Freitag, 2013 from Luzon are reported.


Thirteen New Species Of Butterflies (Lepidoptera: Hesperiidae) From Texas, Jing Zhang, Qian Cong, Nick V. Grishin Jan 2023

Thirteen New Species Of Butterflies (Lepidoptera: Hesperiidae) From Texas, Jing Zhang, Qian Cong, Nick V. Grishin

Insecta Mundi

Analyses of whole genomic shotgun datasets, COI barcodes, morphology, and historical literature suggest that the following 13 butterfly species from the family Hesperiidae (Lepidoptera: Papilionoidea) in Texas, USA are distinct from their closest named relatives and therefore are described as new (type localities are given in parenthesis): Spicauda atelis Grishin, new species (Hidalgo Co., Mission), Urbanus (Urbanus) rickardi Grishin, new species (Hidalgo Co., nr. Madero), Urbanus (Urbanus) oplerorum Grishin, new spe­cies (Hidalgo Co., Mission/Madero), Telegonus tsongae Grishin, new species (Starr Co., Roma), Autochton caballo Grishin, new species (Hidalgo Co., 6 mi W of Hidalgo), Epargyreus fractigutta …


Harnessing Citizen Science And Collections Data For Invasive Plant Surveillance, Adin L. Ring Jan 2023

Harnessing Citizen Science And Collections Data For Invasive Plant Surveillance, Adin L. Ring

Library Map Prize

Our main source of information about the distribution of invasive plants in the United States comes from occurrence records in three categories: biological collections (physical plant specimens in museums), citizen science (opportunistic observations by untrained civilians), and invasion monitoring (structured observation by government or non-profit agencies). This study compiles a set of 3.1 million occurrence records of 3,578 introduced plant species in the continental United States, and infers spatial, temporal, and taxonomic biases by comparing the three categories of data. We find that citizen science contributes the largest bulk of records, and does better capturing visually conspicuous plants and very …


Comparison Of Groundwater Chemistry And Associated Biodiversity Of Sulfidic Karst Habitats In Southcentral Kentucky, Kendall Wheeler Jan 2023

Comparison Of Groundwater Chemistry And Associated Biodiversity Of Sulfidic Karst Habitats In Southcentral Kentucky, Kendall Wheeler

Mahurin Honors College Capstone Experience/Thesis Projects

In most ecosystems, primary production is conducted by plants or photosynthetic microbes; however, extremophilic sulfur-oxidizing bacteria can use hydrogen sulfide gas (H2S) as an electron donor to produce metabolic energy in a type of metabolism called chemoautotrophy. These ecosystems are a prominent feature of some karst landscapes, and two have been observed in the Mammoth Cave system, Sulphur River in Parker Cave and Marianne’s Pass in Mammoth Cave National Park respectively.

Sulfidic water is ubiquitous in southcentral Kentucky and is strongly associated with hydrocarbon deposits. This oil boom of the 1880s in this region predates most environmental regulation and records …


Conservation Easements: A Tool For Preserving Wildlife Habitat On Private Lands, Robin M. Rotman, Sarah A. Brown, Michael A. Powell, Sonja A. Wilhelm Stanis Jan 2023

Conservation Easements: A Tool For Preserving Wildlife Habitat On Private Lands, Robin M. Rotman, Sarah A. Brown, Michael A. Powell, Sonja A. Wilhelm Stanis

Faculty Publications

Conservation easements are an essential tool for conserving private lands, and they have great potential for enhancing wildlife habitat and biodiversity. Private land conservation in the United States is likely to increase in the coming years, in light of Executive Order No. 14,008, issued by President Joseph Biden on January 27, 2021, which set a goal of conserving at least 30% of U.S. lands and waters by 2030 (Executive Office of the President 2021). There is, therefore, a need to evaluate the effect of conservation easements on wildlife habitat and biodiversity and to make recommendations for further enhancing the effectiveness …


A Multi-Taxon Analysis Of European Red Lists Reveal Major Threats To Biodiversity, Axel Hochkirch, Melanie Bilz, Catarina C. Ferreira, Anja Danielczak, David Allen, Ana Nieto, Carlo Rondinini, Kate Harding, Craig Hilton-Taylor, Caroline M. Pollock, Mary Seddon, Jean-Christophe Vié, Keith N. A. Alexander, Emily Beech, Manuel Biscoito, Yoan Braud, Ian J. Burfield, Filippo Maria Buzzetti, Marta Cálix, Kent E. Carpenter, Ning Labbish Chao, Dragan Chobanov, Maarten J. M. Christenhusz, Bruce B. Collette, Mia T. Comeros-Raynal, Neil Cox, Matthew Craig, Annabelle Cuttelod, William R. T. Darwall, Benoit Dodelin, Nicholas K. Dulvy, Eve Englefield, Michael F. Fay, Nicholas Fettes, Jörg Freyhof, Silvia García, Mariana García Criado, Michael Harvey, Nick Hodgetts, Christina Ieronymidou, Vincent J. Kalkman, Shelagh P. Kell, James Kemp, Sonia Khela, Richard V. Lansdown, Julia M. Lawson, Danna J. Leaman, Joana Magos Brehm, Nigel Maxted, Rebecca M. Miller, Eike Neubert, Baudewijn Odé, David Pollard, Riley Pollom, Rob Pople, Juan José Presa Asensio, Gina M. Ralph, Hassan Rankou, Malin Rivers, Stuart P. M. Roberts, Barry Russell, Alexander Sennikov, Fabien Soldati, Anna Staneva, Emilie Stump, Andy Symes, Dmitry Telnov, Helen Temple, Andrew Terry, Anastasiya Timoshyna, Chris Van Swaay, Henry Väre, Rachel H. L. Walls, Luc Willemse, Brett Wilson, Jemma Window, Emma G. E. Wright, Thomas Zuna-Kratky Jan 2023

A Multi-Taxon Analysis Of European Red Lists Reveal Major Threats To Biodiversity, Axel Hochkirch, Melanie Bilz, Catarina C. Ferreira, Anja Danielczak, David Allen, Ana Nieto, Carlo Rondinini, Kate Harding, Craig Hilton-Taylor, Caroline M. Pollock, Mary Seddon, Jean-Christophe Vié, Keith N. A. Alexander, Emily Beech, Manuel Biscoito, Yoan Braud, Ian J. Burfield, Filippo Maria Buzzetti, Marta Cálix, Kent E. Carpenter, Ning Labbish Chao, Dragan Chobanov, Maarten J. M. Christenhusz, Bruce B. Collette, Mia T. Comeros-Raynal, Neil Cox, Matthew Craig, Annabelle Cuttelod, William R. T. Darwall, Benoit Dodelin, Nicholas K. Dulvy, Eve Englefield, Michael F. Fay, Nicholas Fettes, Jörg Freyhof, Silvia García, Mariana García Criado, Michael Harvey, Nick Hodgetts, Christina Ieronymidou, Vincent J. Kalkman, Shelagh P. Kell, James Kemp, Sonia Khela, Richard V. Lansdown, Julia M. Lawson, Danna J. Leaman, Joana Magos Brehm, Nigel Maxted, Rebecca M. Miller, Eike Neubert, Baudewijn Odé, David Pollard, Riley Pollom, Rob Pople, Juan José Presa Asensio, Gina M. Ralph, Hassan Rankou, Malin Rivers, Stuart P. M. Roberts, Barry Russell, Alexander Sennikov, Fabien Soldati, Anna Staneva, Emilie Stump, Andy Symes, Dmitry Telnov, Helen Temple, Andrew Terry, Anastasiya Timoshyna, Chris Van Swaay, Henry Väre, Rachel H. L. Walls, Luc Willemse, Brett Wilson, Jemma Window, Emma G. E. Wright, Thomas Zuna-Kratky

Biological Sciences Faculty Publications

Biodiversity loss is a major global challenge and minimizing extinction rates is the goal of several multilateral environmental agreements. Policy decisions require comprehensive, spatially explicit information on species’ distributions and threats. We present an analysis of the conservation status of 14,669 European terrestrial, freshwater and marine species (ca. 10% of the continental fauna and flora), including all vertebrates and selected groups of invertebrates and plants. Our results reveal that 19% of European species are threatened with extinction, with higher extinction risks for plants (27%) and invertebrates (24%) compared to vertebrates (18%). These numbers exceed recent IPBES (Intergovernmental Platform on Biodiversity …


Levels Of Autotrophy And Heterotrophy In Mesophotic Corals Near The End Photic Zone, Amy Carmignani, Veronica Z. Radice, Kathryn M. Mcmahon, Alex I. Holman, Karen Miller, Kliti Grice, Zoe Richards Jan 2023

Levels Of Autotrophy And Heterotrophy In Mesophotic Corals Near The End Photic Zone, Amy Carmignani, Veronica Z. Radice, Kathryn M. Mcmahon, Alex I. Holman, Karen Miller, Kliti Grice, Zoe Richards

Biological Sciences Faculty Publications

Mesophotic corals live at ~30-150 m depth and can sustain metabolic processes under light-limited conditions by enhancing autotrophy through specialized photoadaptations or increasing heterotrophic nutrient acquisition. These acclimatory processes are often species-specific, however mesophotic ecosystems are largely unexplored and acclimation limits for most species are unknown. This study examined mesophotic coral ecosystems using a remotely operated vehicle (Ashmore Reef, Western Australia at 40–75m depth) to investigate the trophic ecology of five species of scleractinian coral (from genera Leptoseris, Pachyseris, and Craterastrea) using stable isotope analyses (δ13C and δ15N) of host and symbiont tissues …


Biodiversity Of Philippine Marine Fishes: A Dna Barcode Reference Library Based On Voucher Specimens, Katherine E. Bemis, Matthew G. Girard, Mudjekeewis D. Santos, Kent E. Carpenter, Jonathan R. Deeds, Diane E. Pitassy, Nicko Amor L. Flores, Elizabeth S. Hunter, Amy C. Driskell, Kenneth S. Macdonald Iii, Lee A. Weigt, Jeffrey T. Williams Jan 2023

Biodiversity Of Philippine Marine Fishes: A Dna Barcode Reference Library Based On Voucher Specimens, Katherine E. Bemis, Matthew G. Girard, Mudjekeewis D. Santos, Kent E. Carpenter, Jonathan R. Deeds, Diane E. Pitassy, Nicko Amor L. Flores, Elizabeth S. Hunter, Amy C. Driskell, Kenneth S. Macdonald Iii, Lee A. Weigt, Jeffrey T. Williams

Biological Sciences Faculty Publications

Accurate identification of fishes is essential for understanding their biology and to ensure food safety for consumers. DNA barcoding is an important tool because it can verify identifications of both whole and processed fishes that have had key morphological characters removed (e.g., filets, fish meal); however, DNA reference libraries are incomplete, and public repositories for sequence data contain incorrectly identified sequences. During a nine-year sampling program in the Philippines, a global biodiversity hotspot for marine fishes, we developed a verified reference library of cytochrome c oxidase subunit I (COI) sequences for 2,525 specimens representing 984 species. Specimens were primarily purchased …


Global Phylogenomic Assessment Of Leptoseris And Agaricia Reveals Substantial Undescibed Diversity At Mesophotic Depths, J. C. Gijsbers, N. Englebert, K. E. Prata, M. Pichon, Z. Dinesen, R. Brunner, G. Eyal, F. L. González-Zapata, S. E. Kahng, K. R. W. Latijnhouwers, P. Muir, V. Z. Radice, J. A. Sánchez, M. J. A. Vermeij, O. Hoegh-Guldberg, S. J. Jacobs, P. Bongaerts Jan 2023

Global Phylogenomic Assessment Of Leptoseris And Agaricia Reveals Substantial Undescibed Diversity At Mesophotic Depths, J. C. Gijsbers, N. Englebert, K. E. Prata, M. Pichon, Z. Dinesen, R. Brunner, G. Eyal, F. L. González-Zapata, S. E. Kahng, K. R. W. Latijnhouwers, P. Muir, V. Z. Radice, J. A. Sánchez, M. J. A. Vermeij, O. Hoegh-Guldberg, S. J. Jacobs, P. Bongaerts

Biological Sciences Faculty Publications

Background: Mesophotic coral communities are increasingly gaining attention for the unique biological diversity they host, exemplified by the numerous mesophotic fish species that continue to be discovered. In contrast, many of the photosynthetic scleractinian corals observed at mesophotic depths are assumed to be depth-generalists, with very few species characterised as mesophotic-specialists. This presumed lack of a specialised community remains largely untested, as phylogenetic studies on corals have rarely included mesophotic samples and have long suffered from resolution issues associated with traditional sequence markers.

Results: Here, we used reduced-representation genome sequencing to conduct a phylogenomic assessment of the two dominant mesophotic …


It Turned Into A Bioblitz: Urban Data Collection For Building Scientific Literacy And Environmental Connection, Kelly O'Donnell, Lisa Brundage Jan 2023

It Turned Into A Bioblitz: Urban Data Collection For Building Scientific Literacy And Environmental Connection, Kelly O'Donnell, Lisa Brundage

Publications and Research

In 2013, Macaulay Honors College redesigned its required science curriculum to focus on scientific literacy skills rather than content. Central to this shift was inclusion of a data collection event, a BioBlitz, to provide students with the basis for their own semester-long research projects. Students are teamed with naturalists in an urban green space to find as many species as they can in 24 h and to contribute to a global biodiversity database via the app iNaturalist. We have learned two important lessons: (1) developing an interdisciplinary curriculum with a high degree of experiential learning is more successful when both …


Bibliography, Charles H. Smith Jan 2023

Bibliography, Charles H. Smith

Faculty/Staff Personal Papers

Bibliography of publications by Charles H. Smith.


Seagrass Posidonia Escarpments Support High Diversity And Biomass Of Rocky Reef Fishes, Oscar Serrano Gras, Karina Inostroza, Glenn Hyndes, Alan M. Friedlander, Eduard Serrano, Caitlin Rae, Enric Ballesteros Jan 2023

Seagrass Posidonia Escarpments Support High Diversity And Biomass Of Rocky Reef Fishes, Oscar Serrano Gras, Karina Inostroza, Glenn Hyndes, Alan M. Friedlander, Eduard Serrano, Caitlin Rae, Enric Ballesteros

Research outputs 2022 to 2026

Although seagrass meadows form a relatively homogenous habitat, escarpments, which form three-dimensional structures and originate from the erosion of seagrass peat, can provide important habitat for reef fishes. Here, we compare fish assemblages and habitat structural complexity among seagrass Posidonia australis escarpments and canopies, as well as limestone reef habitats, to understand the role of seagrass escarpments as reef fish habitat in Shark Bay, Western Australia. The total number of fish species, fish biomass, and top predator biomass were significantly higher in seagrass escarpments and reef habitats than in seagrass canopies due to lower habitat structural complexity and thus becoming …