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Full-Text Articles in Life Sciences
A Risk Assessment And Phylogenetic Approach, Culum Brown
A Risk Assessment And Phylogenetic Approach, Culum Brown
Culum Brown, PhD
The precautionary principal is often invoked when talking about the evidence of sentience in animals, largely because we can never be certain what any animal is thinking or feeling. Birch (2017) offers a preliminary framework for the use of the precautionary principal for animal sentience combining an epistemic rule with a decision rule. I extend this framework by adding an evolutionary phylogentic approach which spreads the burden of proof across broad taxonomic groups and a risk assessment component which magnifies the likely impact by the number of animals involved.
A Polyglot Approach To Bioinformatics Data Integration: A Phylogenetic Analysis Of Hiv-1, Steven Reisman, Thomas Hatzopoulos, Konstantin Laufer, George K. Thiruvathukal, Catherine Putonti
A Polyglot Approach To Bioinformatics Data Integration: A Phylogenetic Analysis Of Hiv-1, Steven Reisman, Thomas Hatzopoulos, Konstantin Laufer, George K. Thiruvathukal, Catherine Putonti
Konstantin Läufer
As sequencing technologies continue to drop in price and increase in throughput, new challenges emerge for the management and accessibility of genomic sequence data. We have developed a pipeline for facilitating the storage, retrieval, and subsequent analysis of molecular data, integrating both sequence and metadata. Taking a polyglot approach involving multiple languages, libraries, and persistence mechanisms, sequence data can be aggregated from publicly available and local repositories. Data are exposed in the form of a RESTful web service, formatted for easy querying, and retrieved for downstream analyses. As a proof of concept, we have developed a resource for annotated HIV-1 …
A Polyglot Approach To Bioinformatics Data Integration: A Phylogenetic Analysis Of Hiv-1, Steven Reisman, Thomas Hatzopoulos, Konstantin Laufer, George K. Thiruvathukal, Catherine Putonti
A Polyglot Approach To Bioinformatics Data Integration: A Phylogenetic Analysis Of Hiv-1, Steven Reisman, Thomas Hatzopoulos, Konstantin Laufer, George K. Thiruvathukal, Catherine Putonti
Catherine Putonti
As sequencing technologies continue to drop in price and increase in throughput, new challenges emerge for the management and accessibility of genomic sequence data. We have developed a pipeline for facilitating the storage, retrieval, and subsequent analysis of molecular data, integrating both sequence and metadata. Taking a polyglot approach involving multiple languages, libraries, and persistence mechanisms, sequence data can be aggregated from publicly available and local repositories. Data are exposed in the form of a RESTful web service, formatted for easy querying, and retrieved for downstream analyses. As a proof of concept, we have developed a resource for annotated HIV-1 …
A Polyglot Approach To Bioinformatics Data Integration: A Phylogenetic Analysis Of Hiv-1, Steven Reisman, Thomas Hatzopoulos, Konstantin Laufer, George K. Thiruvathukal, Catherine Putonti
A Polyglot Approach To Bioinformatics Data Integration: A Phylogenetic Analysis Of Hiv-1, Steven Reisman, Thomas Hatzopoulos, Konstantin Laufer, George K. Thiruvathukal, Catherine Putonti
George K. Thiruvathukal
As sequencing technologies continue to drop in price and increase in throughput, new challenges emerge for the management and accessibility of genomic sequence data. We have developed a pipeline for facilitating the storage, retrieval, and subsequent analysis of molecular data, integrating both sequence and metadata. Taking a polyglot approach involving multiple languages, libraries, and persistence mechanisms, sequence data can be aggregated from publicly available and local repositories. Data are exposed in the form of a RESTful web service, formatted for easy querying, and retrieved for downstream analyses. As a proof of concept, we have developed a resource for annotated HIV-1 …
The Fossilized Birth–Death Process For Coherent Calibration Of Divergence-Time Estimates, Tracy A. Heath, John P. Huelsenbeck, Tanja Stadler
The Fossilized Birth–Death Process For Coherent Calibration Of Divergence-Time Estimates, Tracy A. Heath, John P. Huelsenbeck, Tanja Stadler
Tracy Heath
Boosting The Performance Of Bayesian Divergence Time Estimation With The Phylogenetic Likelihood Library, Diego Darriba, Andre Aberer, Tomas Flouri, Tracy A. Heath, Fernando Izquierdo-Carrasco, Alexandros Stamatakis
Boosting The Performance Of Bayesian Divergence Time Estimation With The Phylogenetic Likelihood Library, Diego Darriba, Andre Aberer, Tomas Flouri, Tracy A. Heath, Fernando Izquierdo-Carrasco, Alexandros Stamatakis
Tracy Heath
Maximum Likelihood Estimates Of Species Trees: How Accuracy Of Phylogenetic Inference Depends Upon The Divergence History And Sampling Design, John Mccormack, Huateng Huang, L. Knowles
Maximum Likelihood Estimates Of Species Trees: How Accuracy Of Phylogenetic Inference Depends Upon The Divergence History And Sampling Design, John Mccormack, Huateng Huang, L. Knowles
John E. McCormack
The understanding that gene trees are often in discord with each other and with the species trees that contain them has led researchers to methods that incorporate the inherent stochasticity of genetic processes in the phylogenetic estimation procedure. Recently developed methods for species-tree estimation that not only consider the retention and sorting of ancestral polymorphism but also quantify the actual probabilities of incomplete lineage sorting are expected to provide an improvement over earlier summary-statistic based approaches that discard much of the information content of gene trees. However, these new methods have yet to be tested on truly challenging evolutionary histories …
Road-Killed Bats, Highway Design, And The Commuting Ecology Of Bats, Amy L. Russell, Calvin M. Butchkoski, Leslie Saidak, Gary F. Mccracken
Road-Killed Bats, Highway Design, And The Commuting Ecology Of Bats, Amy L. Russell, Calvin M. Butchkoski, Leslie Saidak, Gary F. Mccracken
Amy L. Russell
The Evolution Of Flight In Insects: Insights From Mayflies And Dna, T. Heath Ogden
The Evolution Of Flight In Insects: Insights From Mayflies And Dna, T. Heath Ogden
T. Heath Ogden
No abstract provided.
Evolution, Jonathan Eisen
Working At The Interface Of Phylogenetics And Population Genetics: A Biogeographical Analysis Of Triaenops Spp. (Chiroptera: Hipposideridae, Amy L. Russell, J. Ranivo, E. P. Palkovacs, S. M. Goodman, A. D. Yoder
Working At The Interface Of Phylogenetics And Population Genetics: A Biogeographical Analysis Of Triaenops Spp. (Chiroptera: Hipposideridae, Amy L. Russell, J. Ranivo, E. P. Palkovacs, S. M. Goodman, A. D. Yoder
Amy L. Russell
Taxonomic Differences Between Birds And Mammals In Their Responses To Chemical Irritants, Russell Mason, Larry Clark, Pankaj Shah
Taxonomic Differences Between Birds And Mammals In Their Responses To Chemical Irritants, Russell Mason, Larry Clark, Pankaj Shah
Larry Clark
Ninety-five products are registered with the u.s. Environmental Pro tection Agency as bird damage control chemicals, but 38 (40%) are non lethal chemical repellents (Eschen and Schafer, 1986). Of these products, the active ingredients in 27 (71%) are methiocarb (a physiologic repellent that acts through food avoidance learning) or polybutene (a tactile repel lent). In general, chemical repellents are effective either because of aversive sensory effects (irritation), or because of post-ingestional ma laise (sickness). If the former, then chemicals are usually stimulants of trigeminal pain receptors (i.e., undifferentiated free nerve endings) in the nose, mouth, and eyes (Mason and Otis, …