Life Sciences Commons^™

The Biological Function Of Hammerhead Rana Ribozyme In Human Genome, Ibtehal M. A. Awad

Theses

Hammerhead RNA [HHR] sequence originally found in viroids is also detected in many species. HHR are often found in introns of different genes ranging from prokaryotes to

eukaryotes. HHR can form specific tertiary structure that make specific region susceptible to cleavage. However, the role of the HHR is not clear in other life forms. This study aims to

Investigate the role of HHR in the intron 6 of (RECK) gene. Our study shows that when blocking the HHR sequence in the intron6, the production of RECK protein declines which may be due to the effect of HHR in splicing and …

Microarray Analysis Of Arabidopsis Wrky33 Mutants In Response To The Necrotrophic Fungus Botrytis Cinerea, Shamma Saeed Salem Al Shamsi

Theses

Plants are exposed to many environmental stresses that affect their growth and development. These stresses include biotic stresses (via organisms) and abiotic stresses (via environment). Plants respond to these stresses by transcriptional reprogramming and different signaling pathways. Arabidopsis thaliana has shown great sensitivity to the biotic stress Botrytis cinerea. The WRKY33 gene plays an important role in plant defense mechanism against this pathogen. The overall goal is to identify common regulated genes of wrky33 mutant and 35S:WRKY33 over expressing transgenic lines in response to B. cinerea; ultimately to improve plant stress tolerance in Arabidopsis. The specific aims are to: (1) …

The Prevalence Of Streptococcus Pyogenes And Its Emm Gene Types Among School Children In Ai Ain, Uae, Fatima Hammad Ali Al Shamisi

Theses

Streptococcus pyogenes, also known as Group a streptococcus (GAS), causes a wide variety of diseases in children and adults, and it frequently infects the pharynx and skin; pharyngitis and tonsillitis are one of the commonest diseases caused by this pathogen. GAS evaded by many virulence factors, however, the most significant part is the M protein, which plays a major role in its pathogenicity. Over 225 M protein types have been identified so far by the emm typing technique. Identification and emm typing of GAS is an essential part of epidemiological and pathogenic studies of streptococcal diseases, as different regions of …

Identification And Characterization Of The Anticancer Potential Of Indigenous Medicinal Plants Of The Arabian Peninsula, Sameera Omar Mohammed Saeed Balhamar

Theses

Indigenous plant species historically used for their medicinal properties are a tremendous source for bringing newer and safer drugs to the market. A concerted effort is needed to characterize their medicinal potential and identify new molecules that could be exploited in modern medicine. The current study was undertaken to study the anticancer properties of several indigenous plants that are used by the local population of the Arabian Peninsula and beyond for various medicinal purposes. Towards this end, we acquired different plant extracts from five plants, namely Boswellia sacra (BS), Cleome droserifolia (CD), Teucrium muscatensis (TM), Orchadenus arabicus (OA), and Acredocarpus …

Comparative Study Of Nutrient Uptake Between Sorghum X Drummond Ii And Cyperus Conglomeratus, A Desert Sedge Native To The Uae, Safaa Alm1ed Alghasyah Aldhanhani

Theses

Sudan grass (Sorghum x drummondii) is commonly grown for the production of animal fodder in the UAE. Cyperus conglomeratus (locally termed ‘Thenda’) is a sedge native to the UAE, and one of the very few plants that colonize soils of shifting desert dunes. The native plant is grazed by camels, and may thus have a potential for animal feed production. While Sudan grass is a mycotrophic plant that normally lives in symbiosis with arbuscular mycorrhizal fungi for facilitation of nutrient uptake, C. conglomeratus is a non-host to these root symbionts. In the desert sedges rhizosheaths comprising of dense coats of …

Safaa Ahmed Hamdan Alghasyah Aldhanhani, Safaa Ahmed Hamdan Alghasyah Aldhanhani

Theses

Sudan grass (Sorghum x drummondii) is commonly grown for the production of animal fodder in the UAE. Cyperus conglomeratus (locally termed 'Thenda') is a sedge native to the UAE, and one of the very few plants that colonize soils of shifting desert dunes. The native plant is grazed by camels, and may thus have a potential for animal feed production. While Sudan grass is a mycotrophic plant that normally lives in symbiosis with arbuscular mycorrhizal fungi for facilitation of nutrient uptake, C. conglomeratus is a non-host to these root symbionts. In the deseli sedges rhizosheaths comprising of dense …

Settlement Of Larval Spotted Sand Bass (Paralabrax Maculatofasciatus) Within Mission Bay, San Diego Ca In Relation To Environmental Conditions, Anthony J. Basilio

Theses

Monitoring the number of larvae that have recently settled and how this varies in relation to environmental conditions provides insight into future population strength, which is a fundamental goal of marine ecology as well as fisheries management. This research focused on characterizing the settlement patterns of spotted sand bass (Paralabrax maculatofasciatus), a recreationally important species that utilizes bays and estuaries as nursery habitat. To quantify P. maculatofasciatus settlement patterns, three larval collectors were installed near the mouth of Mission Bay, San Diego CA, and retrieved weekly from June – October of 2012 – 2015. Larvae were counted, and …

Multisensory Integration In Weakly Electric Fish, Andrea Roeser

Theses

Animals integrate information from across sensory systems, such as vision and hearing, to improve perception. To understand how neural circuits in the central nervous system integrate information from different senses, the responses of midbrain neurons to two categories of electrosensory stimuli in Eigenmannia virescens were studied. The first category of stimulus is electrical signals with frequencies below 50 Hz that are encoded in the activity of ampullary receptors. The second category is amplitude modulations of the electric organ discharge, which are encoded by p-type tuberous receptors. Six multisensory neurons were found that responded to both categories of stimuli. However, when …

Gene Network Understanding And Analysis, Maria E. Somoza

Theses

Gene regulatory network (GRN) is a collection of regulators that interact with each other in the cell to govern the gene expression levels of mRNA and proteins. These regulators can either be DNA, RNA, protein and their complex. Transcriptional gene regulation is an important mechanisms in which an in-depth study can lead to various practical applications, and a greater understanding of how organisms control their cellular behavior. One of the most widely studied organisms in gene regulatory networks are the Mycobacterium tuberculosis and Corynebacterium glutamicum ATCC 13032.

Gene co-expression networks are of biological interests due to co-expressed genes which are …

Uusing The Kdj As A Trading Strategy On Biotech Companies, Shijie Zha

Theses

Mean Reversion is the most commonly used model in quantitative trading. This model is associated with several factors, like ma5 and ma10 line. These factors are the most significant in stock markets. However, the disadvantages of this model are lag and inaccuracy.

In this research, we get the historical and current stock data by web crawler, analyze the quantitative data and build a new model involved with the KDJ. Taking biotech companies marketed in the United States and B-share marketed in China as the research subjects, the result shows increased profits compared with the Mean Reversion model. It also shows …

Effects Of Streptozotocin-Induced Diabetes On Gene And Protein Expression In Sinoatrial Node Of Rat Heart, Zannatul Ferdous

Theses

Diabetes mellitus is one of the most common endocrine disorders and its global prevalence is increasing at an alarming rate. Cardiovascular disease is the major cause of morbidity and mortality among diabetic patients. In addition to defects in contraction, the diabetic heart also frequently suffers from disturbances to the electrical conduction system. This study investigates the effects of diabetes on the sinoatrial node (SAN) of the rat heart. Previous in vivo and in vitro experiments have demonstrated reduced heart rate, longer SAN action potential duration, prolonged pacemaker cycle length and Sino-atrial conduction time in streptozotocin (STZ) - induced diabetic rat …

Biological Efficiency Of Recycling Organic Waste With Edible Fungi, Yusra Matar Al Shamsi

Theses

Mushrooms has been known as important cultivars for their nutritional and medicinal values, the species Pleurotus sajor caju and Calocybe indica were selected in this investigation for being used in previous studies to be grown on different lignocellulosic materials. Cultivating mushrooms on plant wastes is value-added way to produce a source of human food and is an efficient way to recycle those residues. Date palm leaf waste, date palm bunch waste and mowed turf grass waste were used as mushroom growing substrates. Date palm is the most important plant grown in the UAE and it produce tons of wastes every …

In Vitro Re Generation And Marker Assisted Evaluation Of Genetic Fidelity In Endangered Tree Species Moringa Peregrina (Forsk) Fiori, Salama Mohammed Al Dhaberi

Theses

Moringa peregrina is a native plant in the United Arab Emirates; it is called “Shua”.It is an endangered species with important nutritive and medicinal properties. It shows high adaptability to the arid condition with short germination time after irrigation. Unmanaged grazing and slow regeneration rate after browsing leads to the endangerment of the species causing erosion in biodiversity. One way to protect these rare species is by multiplying the planting material through tissue culture system and re-introducing at the habitat. Micro propagation is an in vitro method used for plant clonal multiplication under controlled condition. This technique allows conserving the …

Examining The Growth And Performance Of The Effect Of Uv-B Radiation On United Arab Emirates Date Palm Tree (Phoenix Dactylifera), Saeedallah Abdulwali Niazwali

Theses

The stratospheric ozone depletion and elevated solar UV-B radiation have a negative effect on living life forms. UV radiation is one of the unsafe components that cause hindrance to both flora and fauna on the earth. This will have important implications for ecosystem processes and food production. The present study has been designed with primary objective of the effect of UV-B radiation on five numbers of most cultivated Emirates varieties (i.e., BARHI, FRDWT, NBTSF, FRDRD and KHD). After 4 and 8 hrs/day UVB treatment the Shoot, Root and total Plant length, Total plant fresh weight, Shoot and Root fresh and …

Effect Of Substrates, Iba And Types Of Cuttings On Rooting, Salim Mohammed Ai Makhmari

Theses

Tamarix aphylla L. (Locally known as Athel) was selected for the present investigation. It is native to Middle East (which include UAE), North Africa and south Asia. The tree is drought, heat and salt tolerant. It has some traditional uses. The research leading to standardize the propagation of Tamarix aphylla L. is very rare and therefore it is not widely exploited in the urban landscaping. The present study was aimed to standardize the methodology and substrate for rapid propagation of Tamarix aphylla L. tree. The parameters studied were morphological growth parameters, chemical content, biochemical constituents and antioxidant enzymes activities in …

A Comparative Study Of Aromatic Pollutants Degradation Using Two Different Peroxidases, Aysha Hamad Muftah Ai Neyadi

Theses

Enzyme based degradation of organic pollutants is a promising new remediation approach due to the promiscuous nature of the technique, the wide range of available enzymes, and the scalability of the process. Oxidoreductases, specifically, peroxidases are the most popular class of enzymes that have been used for the degradation of organic pollutants. It is generously assumed that all peroxidases behave similarly and produce similar degradation products. Our main objective was to test the hypothesis that related peroxidases may act differentially towards the degradation of aromatic pollutants. Therefore, in this study, we have carried out detailed degradation studies on three model …

Anticonvulsant And Procognitive Properties Of Novel Histamine H3 Receptor Antagonists In Male Adult Rats, Ali Kassem Saad

Theses

To determine the potential of histamine H3 receptor (H3R) ligands as new antiepileptic and procognitive drugs, aromatic ether derivatives (1-12) belonging to the nonimidazole class of ligands, with high in-vitro binding affinity at human H3R, were tested for their in-vivo anticonvulsive activity in maximal electroshock (MES)-, pentylenetetrazole (PTZ)-, and strychnine (STR)-induced seizure models in male adult rats having phenytoin (PHT) and valproic acid (VPA) as the reference antiepileptic drugs, pitolisant (PIT) as the standard H3R antagonist/inverse agonist, and donepezil (DOZ) as a reference procognitive drug. Among the H3R ligands (1-12) tested in the current project, H3R …

Anti-Breast Cancer Effect Of Rhus Coriaria Extract, Khawlah Najib Athamneh

Theses

Plants have been shown to be an excellent source of new drugs, including anticancer agents. Rhus coriaria, commonly known as sumac, a plant that is known to possess different therapeutic values including anti-oxidant and anti-microbial activities. Here, we investigated the anti-cancer effect of R. coriaria on triple negative MDA-MB-231 cell line. We demonstrated that Rhus coriaria ethanolic extract (RCE) inhibits the proliferation of MDA-MB-231 cell line in a time- and concentration dependent manner. RCE induced senescence and cell cycle arrest at G1 phase. Moreover, no proliferative recovery was detected after RCE removal. Annexin V staining and PARP cleavage analysis revealed …

Anti-Metastatic And Anti-Tumor Growth Effects Of Carnosol On Breast Cancer, Halima Ali Mohammed Salem Al Samri

Theses

Our lab has previously showed that carnosol, a naturally occurring polyphenol, exhibits anti-cancer activity by promoting cell cycle arrest at G2 phase, and induces reactive oxygen species (ROS) dependent apoptosis and beclin-1 independent autophagy in triple negative breast cancer (TNBC) cell line (MDA-MB-231). Here, we extended our study by investigating the potential effect of carnosol on migration, invasion and tumor growth of these cells. Our findings demonstrated that carnosol, at non-cytotoxic concentrations, exerted a potent anti-metastatic and anti-tumor growth activity against the highly invasive TNBC cell line, MBA-MB-231. Carnosol inhibited the migration and invasion of MDA-MB-231 cells. Moreover, carnosol suppressed …

Screening Of Synthetic Chemical Agents “Chromenes” With Potent Anti-Breast Cancer Activity, Aysha Hamad Zaher Saeed Al Meqbali

Theses

Cancer is the second leading cause of death worldwide. Conventional therapies cause serious side effects and, at best, merely extend the patient’s lifespan by a few years. Cancer control may therefore benefit from the potential that resides in alternative therapies. There is thus an increasing demand to utilize alternative concepts or approaches to the prevention of cancer. The principal aim of this research is to screen and identify new synthetic compounds “chromenes”, with high efficiency, for breast cancer therapy. In this study, we have screened four newly designed and synthesized chromenes (C1, C15, C28 and C29) for their potential anticancer …

Moths Fight Back: Arms Race In The Cloud Forest, Diana Pamela Rivera

Theses

Moths and bats engage in a coevolutionary arm race, where the same signals bats use to find moths are being used by moths to avoid bats. Moths evolve not only behavioral but acoustic responses to avoid predation by bats. This research examines one small component of a complex, multispecies arm race between moths and bats. In this study we found that the moth Amastus hyalina displayed both flight and acoustic responses to ultrasonic stimuli.

In tethered flight the tiger moth Amastus hyalina (Arctiinae) exhibits a complex array of reactions to ultrasonic tones that includes changes in flight and production of …

Exploration And Implementation Of Innovative Efficiencies/Devices In Beet Processing For Energy Production, Patrick Mcinerney

Theses

The imminent depletion of fossil fuels, as well as concerns for energy security and the obligation to respond to climate change has led to expanding worldwide popularity of Anaerobic Digestion (AD) of energy crops. Sugar beet is a popular AD feedstock due to its favourable characteristics; however it can be quite labour intensive requiring a range of specialist equipment to process the crop prior to undergoing AD. A crucial stage of this process involves the size reduction of beet by a mechanical chopper unit; this pretreatment breaks open the cellulose structure of the crop and increases the surface area available …

Exercising Independently And Exercising Independence: A Phenomenological Study Of Physical Activity And Choice Among Adults With An Intellectual Disability, Sheila O'Sullivan

Theses

Aim/Background: This study examines how adults with intellectual disabilities choose the physical activities they engage in, inside and outside of the day service they attend. Of particular relevance are the benefits derived from physical activity which promotes wellbeing, inclusivity, new opportunities and social acceptance for people with intellectual disability. This is timely in light of current policy with regard to New Directions 2012-2016 which is directed towards moving people with ID from congregated to community settings and the enactment of the recent Assisted Decision Making (Capacity) Act (2015) which supports decision-making for all citizens.

Methodology: The study used phenomenological analysis …

An Investigation Of The Use Of Natural Agents To Control Mycobacteria, Olga Lesniak

Theses

Economic losses that are caused by Mycobacterium avium paratuberculosis (MAP) infections represent a major obstacle for farmers and also for the dairy industry. In order to control the population of MAP, alternative control agents must be investigated. One of the studies described in this thesis focused on using a bacteriophage therapy based approach to assess its efficacy on simulated industrial environments and food models. Another study described in this thesis investigated the antimicrobial effects of parsley and garlic on a range of mycobacteria species. Both studies used conventional microbiological methods such as plaque assays, AlamarBlue assay (MABA) and growth curves, …

Vascular Endothelial Cell Markers And Serum Ferritin In Platelet And Blood Donors, Frances Duggan

Theses

Background and Objectives. The effects of anti-coagulated extracorporeal circulation on plasma levels of haemostatic proteins in plateletpheresis donors, using whole blood donors as a control group was investigated. Also, a prospective analysis of iron status in plateletpheresis donors, using whole blood donors as a control group, was investigated to assess the haematinic effects of regular anti-coagulated extracorporeal circulation and platelet collection. Materials and Methods. Blood samples from 31 regular male plateletpheresis donors and from 14 first time male whole blood donors were taken immediately before and immediately after donation, and also immediately prior to the next donation. These samples were …

High Borate Glasses For The Controlled Release Of Therapeutic Metal Ions, Kathleen O'Connell

Theses

Within the biomaterial community significant effort has been directed towards engineering materials that induce precise host responses, which are tailored to specific applications. However, this has also seen an increase in the complexity of some biomaterials, which is being increasingly criticised within the literature, as it is attributed to hindering their clinical utility. In this context the release of therapeutic metal ions from glass-based biomaterials have been shown to promote hard tissue repair and regeneration through angiogenesis and osteogenesis processes. Within this thesis project two separate quaternary high borate glass systems were prepared containing the therapeutic metal ions strontium and …

Clinical Coagulase-Negative Staphylococci; Identification, Characterisation And Treatment, Emma Gabriel

Theses

The work presented in this thesis focuses on clinically significant staphylococci (with an emphasis on coagulase-negative staphylococci) in terms of their isolation, identification, characterisation, and biocontrol.

CoNS are increasingly being recognised as true nosocomial pathogens yet remain under-characterised, particularly from an Irish clinical perspective. We examined a large cohort of clinically-derived CoNS, isolated from blood (n=l35), identifying them to species level. Extensive antibiotic resistance against nine clinically-relevant antibiotics was recorded. Additionally, widespread biofilm forming capabilities associated with increased virulence was detected both phenotypically and genotypically. We identified multiple species of CoNS in circulation in an Irish healthcare setting, and determined …

Development And Validation Of Gas Chromatographic Methods For Free Fatty Acid Determination In Dairy Products, David Mannion

Theses

Quantification of free fatty acids (FFA) in dairy products by gas chromatography flame ion'^ation detection is an important requirement for qua'ity, research, nutritional, authenticity and legislative purposes. Common procedures are typically variants of either the fatty acid methyl esterification (FAME) or direct on-column injection methods developed more than two decades ago. This study involved the development of an alternative novel derivatization method using butylation, incorporating automation, reducing solvent usage that is applicable for a wide range of dairy products. The accuracy, precision, linearity, limits of detection and limits of quantification of all three methods were assessed for the quantification of …

Investigation Of The Natural Bacteriocin Nisin And Bioengineered Nisin Derivatives For The Prevention And Control Fo Staphylococcus Biofilms On Medical Device Materials, Leanne Kearney

Theses

Antimicrobial resistance has evolved into being one the major threats facing clinical environments worldwide. It has led to the deerease in effective prevention and treatment of pathogenic bacteria. One such bacterium is Staphylococcus epidermidis. Once considered a relatively harmless and commensal baeterium, it has recently evolved into being one the leading eauses of nosocomial infections. S. epidermidis has proven hamiful due to its ability to fonn detrimental biofilms. Biofilms are structured eonsortia of bacteria embedded in a self-produced polymer matrix that allows adherence to biotic or abiotic surfaces. These biofilms have played a leading role in healthcare-acquired infections with particular …

The Effects Of Maturational Variation On The Performance Of Young Australian Footballers And Their Selection Into The Australian Football League's Talent Pathway, Ashley Cripps

Theses

Traditional player development pathways share a common goal, to identify and accelerate the development of talented adolescent players for senior competition. Players who gain selection into development programs gain greater access to experienced coaches, training facilities, support staff and competition. However, despite such advantages, research has shown that few players who gain initial selection into development pathways progress into professional senior competition. A major factor which potentially contributes to poor player retention in development pathways is the initial misidentification of talented athletes due to variations in biological maturity.

Earlier maturing individuals have been shown to be at a physical advantage …