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Articles 1 - 30 of 41
Full-Text Articles in Life Sciences
Repeats Of Unusual Size In Plant Mitochondrial Genomes: Identification, Incidence And Evolution, Emily L. Wynn, Alan C. Christensen
Repeats Of Unusual Size In Plant Mitochondrial Genomes: Identification, Incidence And Evolution, Emily L. Wynn, Alan C. Christensen
School of Biological Sciences: Faculty Publications
Plant mitochondrial genomes have excessive size relative to coding capacity, a low mutation rate in genes and a high rearrangement rate. They also have abundant non-tandem repeats often including pairs of large repeats which cause isomerization of the genome by recombination, and numerous repeats of up to several hundred base pairs that recombine only when the genome is stressed by DNA damaging agents or mutations in DNA repair pathway genes. Early work on mitochondrial genomes led to the suggestion that repeats in the size range from several hundred to a few thousand base pair are underrepresented. The repeats themselves are …
Gene Flow Mediates The Role Of Sex Chromosome Meiotic Drive During Complex Speciation, Colin D. Meiklejohn, Emily L. Landeen, Kathleen E. Gordon, Thomas Rzatkiewicz, Sarah B. Kingan, Anthony J. Geneva, Jeffrey P. Vedanayagam, Christina A. Muirhead, Daniel Garrigan, Daven C. Presgraves, David L. Stern
Gene Flow Mediates The Role Of Sex Chromosome Meiotic Drive During Complex Speciation, Colin D. Meiklejohn, Emily L. Landeen, Kathleen E. Gordon, Thomas Rzatkiewicz, Sarah B. Kingan, Anthony J. Geneva, Jeffrey P. Vedanayagam, Christina A. Muirhead, Daniel Garrigan, Daven C. Presgraves, David L. Stern
School of Biological Sciences: Faculty Publications
During speciation, sex chromosomes often accumulate interspecific genetic incompatibilities faster than the rest of the genome. The drive theory posits that sex chromosomes are susceptible to recurrent bouts of meiotic drive and suppression, causing the evolutionary build- up of divergent cryptic sex-linked drive systems and, incidentally, genetic incompatibilities. To assess the role of drive during speciation, we combine high-resolution genetic mapping of X-linked hybrid male sterility with population genomics analyses of divergence and recent gene flow between the fruitfly species, Drosophila mauritiana and D. simulans. Our findings reveal a high density of genetic incompatibilities and a corresponding dearth of gene …
Molecular Machinery Of Auxin Synthesis,Secretion, And Perception In The Unicellular Chlorophyte Alga Chlorella Sorokiniana Utex 1230, Maya Khasin, Rebecca E. Cahoon, Kenneth Nickerson, Wayne R. Riekhof
Molecular Machinery Of Auxin Synthesis,Secretion, And Perception In The Unicellular Chlorophyte Alga Chlorella Sorokiniana Utex 1230, Maya Khasin, Rebecca E. Cahoon, Kenneth Nickerson, Wayne R. Riekhof
School of Biological Sciences: Faculty Publications
Indole-3-acetic acid is a ubiquitous small molecule found in all domains of life. It is the predominant and most active auxin in seed plants, where it coordinates a variety of complex growth and development processes. The potential origin of auxin signaling in algae remains a matter of some controversy. In order to clarify the evolutionary context of algal auxin signaling, we undertook a genomic survey to assess whether auxin acts as a signaling molecule in the emerging model chlorophyte Chlorella sorokiniana UTEX 1230. C. sorokiniana produces the auxin indole-3-acetic acid (IAA), which was present in both the cell pellet and …
Modeling Effects Of Ecological Factors On Evolution Of Polygenic Pesticide Resistance, C. V. Haridas, Brigitte Tenhumberg
Modeling Effects Of Ecological Factors On Evolution Of Polygenic Pesticide Resistance, C. V. Haridas, Brigitte Tenhumberg
School of Biological Sciences: Faculty Publications
Widespread use of pesticides has resulted in the evolution of resistance in many insect pests worldwide, limiting their use in pest control. Effective pest and resistance management practices require understanding of the genetics of resistance and the life history of the pest. Most models for pesticide resistance assume that resistance is monogenic, conferred by a single gene. However, resistance could evolve as a polygenic quantitative trait resulting from the action of several genes, especially when pesticide dose is low. Further, fitness of the pest could be density dependent and might depend upon abiotic factors such as temperature. It is not …
Fueling Defense: Effects Of Resources On The Ecology And Evolution Of Tolerance To Parasite Infection, Sarah A. Budischak, Clayton E. Cressler
Fueling Defense: Effects Of Resources On The Ecology And Evolution Of Tolerance To Parasite Infection, Sarah A. Budischak, Clayton E. Cressler
School of Biological Sciences: Faculty Publications
Resource availability is a key environmental constraint affecting the ecology and evolution of species. Resources have strong effects on disease resistance, but they can also affect the othermain parasite defense strategy, tolerance. A small but growing number of animal studies are beginning to investigate the effects of resources on tolerance phenotypes. Here, we review how resources affect tolerance strategies across animal taxa ranging from fruit flies to frogs to mice. Surprisingly, resources (quality and quantity) can increase or reduce tolerance, dependent upon the particular host-parasite system. To explore this seeming contradiction, we recast predictions of models of sterility tolerance and …
Males And Females Evolve Riskier Traits In Populations With Eavesdropping Parasitoids, Oliver M. Beckers, William E. Wagner
Males And Females Evolve Riskier Traits In Populations With Eavesdropping Parasitoids, Oliver M. Beckers, William E. Wagner
School of Biological Sciences: Faculty Publications
Predation and/or parasitism often limits the evolution of conspicuous male traits and female preferences because conspicuous traits can attract predators or parasites and it is costly for females to associate with males that attract predators or parasites. As a result, males and females in high-risk populations are expected to evolve safer mating behaviors compared to individuals from low-risk populations. We tested this antagonistic selection hypothesis in the field cricket Gryllus lineaticeps. Males produce chirped songs, and both female crickets and the eavesdropping parasitoid fly Ormia ochracea prefer faster chirp rates. The flies attack the field crickets late in the …
Transcriptomic, Functional, And Network Analyses Reveal Novel Genes Involved In The Interaction Between Caenorhabditis Elegans And Stenotrophomonas Maltophilia, Corin V. White, Michael A. Herman
Transcriptomic, Functional, And Network Analyses Reveal Novel Genes Involved In The Interaction Between Caenorhabditis Elegans And Stenotrophomonas Maltophilia, Corin V. White, Michael A. Herman
School of Biological Sciences: Faculty Publications
The bacterivorous nematode Caenorhabditis elegans is an excellent model for the study of innate immune responses to a variety of bacterial pathogens, including the emerging nosocomial bacterial pathogen Stenotrophomonas maltophilia. The study of this interaction has ecological and medical relevance as S. maltophilia is found in association with C. elegans and other nematodes in the wild and is an emerging opportunistic bacterial pathogen. We identified 393 genes that were differentially expressed when exposed to virulent and avirulent strains of S.maltophilia and an avirulent strain of E. coli. We then used a probabilistic functional gene network model (WormNet) to determine …
Dehydration Stress Memory: Gene Networks Linked To Physiological Responses During Repeated Stresses Of Zea Mays, Laetitia Virlouvet, Thomas J. Avenson, Qian Du, Chi Zhang, Ning Liu, Michael Fromm, Zoya Avramova, Sabrina E. Russo
Dehydration Stress Memory: Gene Networks Linked To Physiological Responses During Repeated Stresses Of Zea Mays, Laetitia Virlouvet, Thomas J. Avenson, Qian Du, Chi Zhang, Ning Liu, Michael Fromm, Zoya Avramova, Sabrina E. Russo
School of Biological Sciences: Faculty Publications
Stress memory refers to the observation that an initial, sub-lethal stress alters plants’ responses to subsequent stresses. Previous transcriptome analyses of maize seedlings exposed to a repeated dehydration stress has revealed the existence of transcriptional stress memory in Zea mays. Whether drought-related physiological responses also display memory and how transcriptional memory translates into physiological memory are fundamental questions that are still unanswered. Using a systems-biology approach we investigate whether/how transcription memory responses established in the genome-wide analysis of Z. mays correlate with 14 physiological parameters measured during a repeated exposure of maize seedlings to dehydration stress. Co-expression network analysis revealed …
Cross-Ecosystem Effects Of Terrestrial Predators Link Treefrogs, Zooplankton, And Aquatic Primary Production, Jessica L. Hite, Myra C. Hughey, Karen M. Warkentin, James R. Vonesh
Cross-Ecosystem Effects Of Terrestrial Predators Link Treefrogs, Zooplankton, And Aquatic Primary Production, Jessica L. Hite, Myra C. Hughey, Karen M. Warkentin, James R. Vonesh
School of Biological Sciences: Faculty Publications
Predators can directly or indirectly shape food webs through a combination of consumptive and non-consumptive effects. Yet, how these effects vary across natural populations and their consequences for adjacent ecosystems remains poorly resolved. We examined links between terrestrial predators and aquatic ecosystems through their effects on a locally abundant amphibian, the red-eyed treefrog (Agalychnis callidryas), which has arboreal eggs (heavily predated by snakes and wasps) and aquatic larvae; embryos can escape terrestrial threats by hatching at an earlier age and smaller size. Our multi-site field survey indicates that in natural populations, the relative contributions of these consumptive and non-consumptive effects …
A Probable Case Of Incipient Speciation In Schizocosa Wolf Spiders Driven By Allochrony, Habitat Use, And Female Mate Choice, R. Tucker Gilman, Kasey Fowler-Finn, Eileen A. Hebets
A Probable Case Of Incipient Speciation In Schizocosa Wolf Spiders Driven By Allochrony, Habitat Use, And Female Mate Choice, R. Tucker Gilman, Kasey Fowler-Finn, Eileen A. Hebets
School of Biological Sciences: Faculty Publications
There is growing evidence that speciation can occur between populations that are not geographically isolated. The emergence of assortative mating is believed to be critical to this process, but how assortative mating arises in diverging populations is poorly understood. The wolf spider genus Schizocosa has become a model system for studying mechanisms of assortative mating. We conducted a series of experiments to identify the factors that control mate-pair formation in a Schizocosa population that includes both ornamented and nonornamented males. We show that the population also includes two previously unrecognized female phenotypes. One female phenotype mates mostly or exclusively with …
Predators Modify The Temperature Dependence Of Life-History Trade-Offs, Thomas M. Luhring, Janna M. Vavra, Clayton E. Cressler, John Delong
Predators Modify The Temperature Dependence Of Life-History Trade-Offs, Thomas M. Luhring, Janna M. Vavra, Clayton E. Cressler, John Delong
School of Biological Sciences: Faculty Publications
Although life histories are shaped by temperature and predation, their joint influence on the interdependence of life-history traits is poorly understood. Shifts in one life-history trait often necessitate shifts in another—structured in some cases by trade-offs— leading to differing life-history strategies among environments. The offspring size–number trade-off connects three traits whereby a constant reproductive allocation (R) constrains how the number (O) and size (S) of offspring change. Increasing temperature and size-independent predation decrease size at and time to reproduction which can lower R through reduced time for resource accrual or size-constrained fecundity. We investigated how O, S, and R in …
Multiple–True–False Questions Reveal The Limits Of The Multiple–Choice Format For Detecting Students With Incomplete Understandings, Brian Couch, Joanna K. Hubbard, Chad Brassil
Multiple–True–False Questions Reveal The Limits Of The Multiple–Choice Format For Detecting Students With Incomplete Understandings, Brian Couch, Joanna K. Hubbard, Chad Brassil
School of Biological Sciences: Faculty Publications
By having students select one answer among several plausible options, multiple–choice (MC) questions capture a student’s preferred answer but provide little information regarding a student’s thinking on the remaining options. We conducted a crossover design experiment in which similar groups of introductory biology students were assigned verbatim questions in the MC format or multiple–true–false (MTF) format, which requires students to separately evaluate each option as either true or false. Our data reveal that nearly half of the students who select the correct MC answer likely hold incorrect understandings of the other options and that the selection rates for individual MC …
Parasite Rearing And Infection Temperatures Jointly Influence Disease Transmission And Shape Seasonality Of Epidemics, Marta S. Shocket, Daniela Vergara, Andrew J. Sickbert, Jason M. Walsman, Alexander T. Strauss, Jessica L. Hite, Meghan A. Duffy, Carla E. Caceres, Spencer R. Hall
Parasite Rearing And Infection Temperatures Jointly Influence Disease Transmission And Shape Seasonality Of Epidemics, Marta S. Shocket, Daniela Vergara, Andrew J. Sickbert, Jason M. Walsman, Alexander T. Strauss, Jessica L. Hite, Meghan A. Duffy, Carla E. Caceres, Spencer R. Hall
School of Biological Sciences: Faculty Publications
Seasonal epidemics erupt commonly in nature and are driven by numerous mechanisms. Here, we suggest a new mechanism that could determine the size and timing of seasonal epidemics: rearing environment changes the performance of parasites. This mechanism arises when the environmental conditions in which a parasite is produced impact its performance—independently from the current environment. To illustrate the potential for “rearing effects”, we show how temperature influences infection risk (transmission rate) in a Daphnia-fungus disease system through both parasite rearing temperature and infection temperature. During autumnal epidemics, zooplankton hosts contact (eat) fungal parasites (spores) reared in a gradually cooling environment. …
Song Recognition And Heterospecific Associations Between 2 Fairy-Wren Species (Maluridae), Allison E. Johnson, Christina Masco, Stephen Pruett-Jones
Song Recognition And Heterospecific Associations Between 2 Fairy-Wren Species (Maluridae), Allison E. Johnson, Christina Masco, Stephen Pruett-Jones
School of Biological Sciences: Faculty Publications
Although heterospecific associations beneficial to one or both species involved (e.g. commensalisms or mutualisms) are common, it is generally assumed that interactions between species are transient and not particular to individuals. However, long-term interactions between individuals of different species do occur. In such heterospecific social groups, discrimination between heterospecific individuals may be beneficial, allowing individuals to direct beneficial or aggressive behaviors towards appropriate targets. Here, we describe heterospecific groups composed of splendid and variegated fairy-wrens (Malurus splendens and M. lamberti) and provide the first experimental evidence that recognition of heterospecific group members occurs across species. In these species, …
Body Size Downgrading Of Mammals Over The Late Quaternary, Felisa A. Smith, Rosemary E. Elliott Smith, S. Kathleen Lyons, Jonathan L. Payne
Body Size Downgrading Of Mammals Over The Late Quaternary, Felisa A. Smith, Rosemary E. Elliott Smith, S. Kathleen Lyons, Jonathan L. Payne
School of Biological Sciences: Faculty Publications
Since the late Pleistocene, large-bodied mammals have been extirpated from much of Earth. Although all habitable continents once harbored giant mammals, the few remaining species are largely confined to Africa. This decline is coincident with the global expansion of hominins over the late Quaternary. Here, we quantify mammalian extinction selectivity, continental body size distributions, and taxonomic diversity over five time periods spanning the past 125,000 years and stretching approximately 200 years into the future. We demonstrate that size-selective extinction was already under way in the oldest interval and occurred on all continents, within all trophic modes, and across all time …
Energetic Tradeoffs Control The Size Distribution Of Aquatic Mammals, William Gearty, Craig R. Mcclain, Jonathan Payne
Energetic Tradeoffs Control The Size Distribution Of Aquatic Mammals, William Gearty, Craig R. Mcclain, Jonathan Payne
School of Biological Sciences: Faculty Publications
Four extant lineages of mammals have invaded and diversified in the water: Sirenia, Cetacea, Pinnipedia, and Lutrinae. Most of these aquatic clades are larger bodied, on average, than their closest land-dwelling relatives, but the extent to which potential ecological, biomechanical, and physiological controls contributed to this pattern remains untested quantitatively. Here, we use previously published data on the body masses of 3,859 living and 2,999 fossil mammal species to examine the evolutionary trajectories of body size in aquatic mammals through both comparative phylogenetic analysis and examination of the fossil record. Both methods indicate that the evolution of an aquatic lifestyle …
Temperature Drives Epidemics In A Zooplankton-Fungus Disease System: A Trait-Driven Approach Points To Transmission Via Host Foraging, Marta S. Shocket, Alexander T. Strauss, Jessica L. Hite, Maja Šljivar, David J. Civitello, Meghan A. Duffy, Carla E. Cáceres, Spencer R. Hall
Temperature Drives Epidemics In A Zooplankton-Fungus Disease System: A Trait-Driven Approach Points To Transmission Via Host Foraging, Marta S. Shocket, Alexander T. Strauss, Jessica L. Hite, Maja Šljivar, David J. Civitello, Meghan A. Duffy, Carla E. Cáceres, Spencer R. Hall
School of Biological Sciences: Faculty Publications
Climatic warming will likely have idiosyncratic impacts on infectious diseases, causing some to increase while others decrease or shift geographically. A mechanistic framework could better predict these different temperature-disease outcomes. However, such a framework remains challenging to develop, due to the nonlinear and (sometimes) opposing thermal responses of different host and parasite traits and due to the difficulty of validating model predictions with observations and experiments. We address these challenges in a zooplanktonfungus (Daphnia dentifera–Metschnikowia bicuspidata) system. We test the hypothesis that warmer temperatures promote disease spread and produce larger epidemics. In lakes, epidemics that start earlier and warmer in …
Effects Of Elevated Co2, Increased Nitrogen Deposition, And Plant Diversity On Aboveground Litter And Root Decomposition, Xiaoan Zuo, Johannes Knops
Effects Of Elevated Co2, Increased Nitrogen Deposition, And Plant Diversity On Aboveground Litter And Root Decomposition, Xiaoan Zuo, Johannes Knops
School of Biological Sciences: Faculty Publications
Global change-induced litter decomposition strongly affects the carbon (C) and nitrogen (N) dynamics in grassland ecosystems. However, few studies show the interactive effects of global change factors on litter and root decomposition. We conducted a four-year grassland field experiment to examine the quality and decomposition of litter and root in a three-factorial experiment with elevated CO2, increased N deposition, and plant species richness. We found that elevated CO2 decreased the litter N content and root lignin content. N addition increased the root N content and decreased the litter lignin content. Increasing plant richness decreased the N and …
Feeding Immunity: Physiological And Behavioral Responses To Infection And Resource Limitation, Sarah A. Budischak, Christina B. Hansen, Quentin Caudron, Romain Garnier, Tyler R. Kartzinel, István Pelczer, Clayton E. Cressler, Anieke Van Leeuwen, Andrea L. Graham
Feeding Immunity: Physiological And Behavioral Responses To Infection And Resource Limitation, Sarah A. Budischak, Christina B. Hansen, Quentin Caudron, Romain Garnier, Tyler R. Kartzinel, István Pelczer, Clayton E. Cressler, Anieke Van Leeuwen, Andrea L. Graham
School of Biological Sciences: Faculty Publications
Resources are a core currency of species interactions and ecology in general (e.g., think of food webs or competition). Within parasite-infected hosts, resources are divided among the competing demands of host immunity and growth as well as parasite reproduction and growth. Effects of resources on immune responses are increasingly understood at the cellular level (e.g., metabolic predictors of effector function), but there has been limited consideration of how these effects scale up to affect individual energetic regimes (e.g., allocation trade-offs), susceptibility to infection, and feeding behavior (e.g., responses to local resource quality and quantity). We experimentally rewilded laboratory mice (strain …
The Development And Application Of Bioinformatics Core Competencies To Improve Bioinformatics Training And Education, Nicola Mulder, Russell Schwartz, Michelle D. Brazas, Cath Brooksbank, Bruno Gaeta, Sarah L. Morgan, Mark A. Pauley, Anne Rosenwald, Gabriella Rustici, Michael Sierk, Tandy Warnow, Lonnie Welch
The Development And Application Of Bioinformatics Core Competencies To Improve Bioinformatics Training And Education, Nicola Mulder, Russell Schwartz, Michelle D. Brazas, Cath Brooksbank, Bruno Gaeta, Sarah L. Morgan, Mark A. Pauley, Anne Rosenwald, Gabriella Rustici, Michael Sierk, Tandy Warnow, Lonnie Welch
School of Biological Sciences: Faculty Publications
Bioinformatics is recognized as part of the essential knowledge base of numerous career paths in biomedical research and healthcare. However, there is little agreement in the field over what that knowledge entails or how best to provide it. These disagreements are compounded by the wide range of populations in need of bioinformatics training, with divergent prior backgrounds and intended application areas. The Curriculum Task Force of the International Society of Computational Biology (ISCB) Education Committee has sought to provide a framework for training needs and curricula in terms of a set of bioinformatics core competencies that cut across many user …
Evidence For Trait-Based Dominance In Occupancy Among Fossil Taxa And The Decoupling Of Macroecological And Macroevolutionary Success, Peter Wagner, Roy E. Plotnick, S. Kathleen Lyons
Evidence For Trait-Based Dominance In Occupancy Among Fossil Taxa And The Decoupling Of Macroecological And Macroevolutionary Success, Peter Wagner, Roy E. Plotnick, S. Kathleen Lyons
School of Biological Sciences: Faculty Publications
Biological systems provide examples of differential success among taxa, from ecosystems with a few dominant species (ecological success) to clades that possess far more species than sister clades (macroevolutionary success). Macroecological success, the occupation by a species or clade of an unusually high number of areas, has received less attention. If macroecological success reflects heritable traits, then successful species should be related. Genera composed of species possessing those traits should occupy more areas than genera with comparable species richness that lack such traits. Alternatively, if macroecological success reflects autapomorphic traits, then generic occupancy should be a by-product of species richness …
Energy Demand And The Context-Dependent Effects Of Genetic Interactions Underlying Metabolism, Luke A. Hoekstra, Cole R. Julick, Katelyn M. Mika, Kristi L. Montooth
Energy Demand And The Context-Dependent Effects Of Genetic Interactions Underlying Metabolism, Luke A. Hoekstra, Cole R. Julick, Katelyn M. Mika, Kristi L. Montooth
School of Biological Sciences: Faculty Publications
Genetic effects are often context dependent, with the same genotype differentially affecting phenotypes across environments, life stages, and sexes.We used an environmental manipulation designed to increase energy demand during development to investigate energy demand as a general physiological explanation for context-dependent effects of mutations, particularly for those mutations that affect metabolism. We found that increasing the photoperiod during which Drosophila larvae are active during development phenocopies a temperature-dependent developmental delay in a mitochondrial-nuclear genotype with disrupted metabolism. This result indicates that the context-dependent fitness effects of this genotype are not specific to the effects of temperature and may generally result …
A Rapid And Efficient Method For Enriching Mitochondrial Dna From Plants, Mackenzie M. Strehle, Emma Purfeerst, Alan C. Christensen
A Rapid And Efficient Method For Enriching Mitochondrial Dna From Plants, Mackenzie M. Strehle, Emma Purfeerst, Alan C. Christensen
School of Biological Sciences: Faculty Publications
Current mitochondrial purification techniques are tedious and protracted due to their emphasis on recovering physiologically active mitochondria. However, for studies that are exclusively interested in isolating mitochondrial DNA (mtDNA) for applications such as PCR and sequencing, respiring mitochondria - and the complex procedures that stem from the need to retain their function - are unnecessary. Still, global DNA extraction methods have proven insufficient for mitochondrial DNA isolation because nuclear mitochondrial DNA segments (NUMTs) pose unique challenges to accurate mtDNA quantification and characterization. We present a rapid and simple extraction technique that maximizes recovery of mitochondrial DNA from plant cells, while …
Gene Turnover And Diversification Of The Α- And Β- Globin Gene Families In Sauropsid Vertebrates, Federico G. Hoffmann, Michael W. Vandewege, Jay F. Storz, Juan C. Opazo
Gene Turnover And Diversification Of The Α- And Β- Globin Gene Families In Sauropsid Vertebrates, Federico G. Hoffmann, Michael W. Vandewege, Jay F. Storz, Juan C. Opazo
School of Biological Sciences: Faculty Publications
The genes that encode the α- and β-chain subunits of vertebrate hemoglobin have served as a model system for elucidating general principles of gene family evolution, but little is known about patterns of evolution in amniotes other than mammals and birds. Here,we report a comparative genomic analysis of the α- and β-globin gene clusters in sauropsids (archosaurs and nonavian reptiles). The objectives were to characterize changes in the size and membership composition of the α- and β-globin gene families within and among the major sauropsid lineages, to reconstruct the evolutionary history of the sauropsid α- and β-globin genes, to resolve …
Molecular Basis Of Hemoglobin Adaptation In The High-Flying Bar-Headed Goose, Chandrasekhar Natarajan, Agnieszka Jendroszek, Amit Kumar, Roy E. Weber, Jeremy R. H. Tame, Angela Fago, Jay F. Storz
Molecular Basis Of Hemoglobin Adaptation In The High-Flying Bar-Headed Goose, Chandrasekhar Natarajan, Agnieszka Jendroszek, Amit Kumar, Roy E. Weber, Jeremy R. H. Tame, Angela Fago, Jay F. Storz
School of Biological Sciences: Faculty Publications
During the adaptive evolution of a particular trait, some selectively fixed mutations may be directly causative and others may be purely compensatory. The relative contribution of these two classes of mutation to adaptive phenotypic evolution depends on the form and prevalence of mutational pleiotropy. To investigate the nature of adaptive substitutions and their pleiotropic effects, we used a protein engineering approach to characterize the molecular basis of hemoglobin (Hb) adaptation in the high-flying bar-headed goose (Anser indicus), a hypoxia-tolerant species renowned for its trans-Himalayan migratory flights. To test the effects of observed substitutions on evolutionarily relevant genetic backgrounds, …
Reproductive Promiscuity In The Variegated Fairy-Wren: An Alternative Reproductive Strategy In The Absence Of Helpers?, Allison E. Johnson, Stephen Pruett-Jones
Reproductive Promiscuity In The Variegated Fairy-Wren: An Alternative Reproductive Strategy In The Absence Of Helpers?, Allison E. Johnson, Stephen Pruett-Jones
School of Biological Sciences: Faculty Publications
Cooperative breeding, in which auxiliary group members help rear related, but nondescendent young, is often explained by kin selection. Reproductive monogamy is predicted in cooperatively breeding systems, as monogamy increases intragroup relatedness and maximizes auxiliary inclusive fitness. While monogamy is observed across many systems, including eusocial insects and cooperatively breeding mammals, some cooperatively breeding birds exhibit high rates of extrapair paternity. Here we quantify paternity and examine the role of auxiliaries on extrapair paternity in the highly cooperative variegated fairy-wren, Malurus lamberti, a species with both male and female auxiliaries. Extrapair paternity occurred in 55.4% of nests, and 39.8% …
Rna-Seq Of Kaposi's Sarcoma Reveals Alterations In Glucose And Lipid Metabolism, For Yue Tso, Andrew V. Kossenkov, Salum J. Lidenge, Owen Ngalamika, John R. Ngowi, Julius Mwaiselage, Jayamanna Wickramasinghe, Eun Hee Kwon, John T. West, Paul M. Lieberman, Charles Wood
Rna-Seq Of Kaposi's Sarcoma Reveals Alterations In Glucose And Lipid Metabolism, For Yue Tso, Andrew V. Kossenkov, Salum J. Lidenge, Owen Ngalamika, John R. Ngowi, Julius Mwaiselage, Jayamanna Wickramasinghe, Eun Hee Kwon, John T. West, Paul M. Lieberman, Charles Wood
School of Biological Sciences: Faculty Publications
Kaposi's sarcoma-associated herpesvirus (KSHV) is the etiologic agent of Kaposi's sarcoma (KS). It is endemic in a number of sub-Saharan African countries with infection rate of >50%. The high prevalence of HIV-1 coupled with late presentation of advanced cancer staging make KS the leading cancer in the region with poor prognosis and high mortality. Disease markers and cellular functions associated with KS tumorigenesis remain ill-defined. Several studies have attempted to investigate changes of the gene profile with in vitro infection of monoculture models, which are not likely to reflect the cellular complexity of the in vivo lesion environment. Our approach …
Synbiotics For Improved Human Health: Recent Developments, Challenges, And Opportunities, Janina A. Krumbeck, Jens Walter, Robert W. Hutkins
Synbiotics For Improved Human Health: Recent Developments, Challenges, And Opportunities, Janina A. Krumbeck, Jens Walter, Robert W. Hutkins
School of Biological Sciences: Faculty Publications
Research on combining pro- and prebiotics as synbiotics to enhance human and animal health has accelerated in the past 10 years, including many clinical trials that have assessed a diverse range of synbiotic formulations. In this review, we summarize these studies as well as the commercial applications of synbiotics that are available. In particular, we critically assess the claimed health benefits of synbiotic applications and the ecological and therapeutic factors to consider when designing synbiotics and discuss the implications of these concepts for future research in this field.
Presence Of Fruits Decreases Probability Of Retaining Flowers In A Sequentially Flowering Plant, Shivani Jadeja, Brigitte Tenhumberg
Presence Of Fruits Decreases Probability Of Retaining Flowers In A Sequentially Flowering Plant, Shivani Jadeja, Brigitte Tenhumberg
School of Biological Sciences: Faculty Publications
Both intrinsic and extrinsic plant processes affect the fate of flowers along an inflorescence in sequentially flowering plants. We investigated whether the intrinsic process of competition for limited resource between fruits and flowers owing to resource preemption or sink strength of basal fruits, or architectural effects due to posi- tional differences in the probability of retaining flowers, explains a lower probability of retaining distal flowers inYucca glauca. Further, we investigated how the extrinsic process of seed herbivory interacts with the plant’s intrinsic processes of flower retention. We carried out a field experiment to compare flower retention among nine combi- nations …
Student, Instructor, And Observer Agreement Regarding Frequencies Of Scientific Teaching Practices Using The Measurement Instrument For Scientific Teaching-Observable (Misto), Mary F. Durham, Jennifer Knight, Emily K. Bremers, Jameson D. Defreece, Alex R. Paine, Brian A. Couch
Student, Instructor, And Observer Agreement Regarding Frequencies Of Scientific Teaching Practices Using The Measurement Instrument For Scientific Teaching-Observable (Misto), Mary F. Durham, Jennifer Knight, Emily K. Bremers, Jameson D. Defreece, Alex R. Paine, Brian A. Couch
School of Biological Sciences: Faculty Publications
Background: The Scientific Teaching (ST) pedagogical framework encompasses many of the best practices recommended in the literature and highlighted in national reports. Understanding the growth and impact of ST requires instruments to accurately measure the extent to which practitioners implement ST in their courses. Researchers have typically relied on students, instructors, or observers to document course teaching practices, but it remains unclear whether and how these perspectives differ from each other. To address this issue, we modified our previously published instrument to generate the Measurement Instrument for Scientific Teaching-Observable (MISTO), which can be completed by students, instructors, and observers, and …