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Articles 1 - 12 of 12
Full-Text Articles in Life Sciences
De-Identified Interviews For The Study: Data Challenges Of Biomedical Researchers In The Age Of Omics, Rolando Garcia-Milian, Denise Hersey, Milica Vukmirovic
De-Identified Interviews For The Study: Data Challenges Of Biomedical Researchers In The Age Of Omics, Rolando Garcia-Milian, Denise Hersey, Milica Vukmirovic
Rolando Garcia-Milian
The Information/Data Needs And Challenges Of Biomedical Researchers In The Age Of Omics, Denise Hersey, Rolando Garcia-Milian
The Information/Data Needs And Challenges Of Biomedical Researchers In The Age Of Omics, Denise Hersey, Rolando Garcia-Milian
Rolando Garcia-Milian
Survey Instrument: Data Challenges Of Biomedical Researchers In The Age Of Omics, Rolando Garcia-Milian, Denise Hersey, Milica Vukmirovic
Survey Instrument: Data Challenges Of Biomedical Researchers In The Age Of Omics, Rolando Garcia-Milian, Denise Hersey, Milica Vukmirovic
Rolando Garcia-Milian
No abstract provided.
Interview Questionaire: Data Challenges Of Biomedical Researchers In The Age Of Omics, Rolando Garcia-Milian, Denise Hersey, Milica Vukmirovic
Interview Questionaire: Data Challenges Of Biomedical Researchers In The Age Of Omics, Rolando Garcia-Milian, Denise Hersey, Milica Vukmirovic
Rolando Garcia-Milian
No abstract provided.
Supporting Biomedical Research In The Era Of Omics And Precision Medicine, Rolando Garcia-Milian, Denise Hersey, Nathan Rupp
Supporting Biomedical Research In The Era Of Omics And Precision Medicine, Rolando Garcia-Milian, Denise Hersey, Nathan Rupp
Rolando Garcia-Milian
Design, Implementation And Evaluation Of A Medical Library Program To Support Biomedical Research In The Omics Era, Rolando Garcia-Milian, John Gallagher, Janis Glover
Design, Implementation And Evaluation Of A Medical Library Program To Support Biomedical Research In The Omics Era, Rolando Garcia-Milian, John Gallagher, Janis Glover
Rolando Garcia-Milian
Making Sense Of Genomic Variation: Part 1 Snp Annotation, Rolando Garcia-Milian
Making Sense Of Genomic Variation: Part 1 Snp Annotation, Rolando Garcia-Milian
Rolando Garcia-Milian
Library Support For Biomedical Research In The Omics Era: 2014- 2015 Report, Rolando Garcia-Milian
Library Support For Biomedical Research In The Omics Era: 2014- 2015 Report, Rolando Garcia-Milian
Rolando Garcia-Milian
The decreased cost of high-throughput technologies has enabled its use as the main research methods to study biological processes and disorders. In order to understand the relevance of the data generated by these methods, the researcher needs mining and integrating the enormous amount of biomedical information and knowledge contained in the text of the scientific literature and biomedical databases. Accordingly, the ability to access and examine molecular data should not be restricted to bioinformaticians or those with exceptional computer skills. In May 2014, the Cushing/Whitney Medical Library began to provide end-user bioinformatics support to the biomedical researchers of the Yale …
Introduction To Gene Enrichment Analysis Tools, Rolando Garcia-Milian
Introduction To Gene Enrichment Analysis Tools, Rolando Garcia-Milian
Rolando Garcia-Milian
Bioinformatics enrichment tools play an important role in identifying, annotating, and functionally analyzing large list of genes generated by high-throughput technologies (e.g. microarrary, RNA-seq, ChIP-chip). This workshop will provide an overview of the principle, type of enrichments, and the infrastructure of enrichment tools. By using concrete examples, it will also introduce some of the most popular tools for gene enrichment analysis such as DAVID, GSEA, and WebGestalt.
Alternative Tools For Mining The Biomedical Literature, Rolando Garcia-Milian
Alternative Tools For Mining The Biomedical Literature, Rolando Garcia-Milian
Rolando Garcia-Milian
The rapid growth of experimental and computational biomedical data is being accompanied by an increase in the number of biomedical publications discussing these results. This makes retrieving relevant scientific information and identifying connections between findings, a challenging task. New literature-mining tools (e.g. KNALIJ, Quertle, NextBio, iHOP, SemMed, GoPubMed, etc) may be of help when sorting through this abundance of literature, as discovery and hypothesis generating tools. This workshop provides an introduction on how to use some of these literature-mining tools when answering research questions.
Biomart: A Research Data Management Tool For The Biomedical Sciences, Rolando Garcia-Milian
Biomart: A Research Data Management Tool For The Biomedical Sciences, Rolando Garcia-Milian
Rolando Garcia-Milian
BioMart (www.biomart.org) is a freely available open source system that allows complex queries across more than 40 different biological data sets through a single web interface. Originally developed for the Ensembl genome browser, BioMart has been integrated into widely used software such as Galaxy, BioConductor, and Cytoskape. The BioMart interface is also used by data portals such as Ensembl, Wormbase, Gramene, and Reactome. In this workshop we will use simple examples to demonstrate how to navigate, build queries, and save and export the results on BioMart such as: - how to retrieve the Ensembl mouse genes and genomic locations in …
Introduction To Genome Browsers, Rolando Garcia-Milian
Introduction To Genome Browsers, Rolando Garcia-Milian
Rolando Garcia-Milian
In this workshop we will learn how to navigate the genome browsers from NCBI's Genome Workbench, UCSC Genome Browser, and Ensembl. These browsers are valuable tools when identifying, localizing genes, and looking at their information in the genomic context. By using concrete examples, it will be shown how to locate a human gene, download a gene sequence and its upstream sequence, locate Single Nucleotide Polymorphisms (SNPs) and conserved regions, and use the browsers to download results in a batch.