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Michigan Tech Publications

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Machine learning

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Full-Text Articles in Life Sciences

Comparison Of High-Resolution Naip And Unmanned Aerial Vehicle (Uav) Imagery For Natural Vegetation Communities Classification Using Machine Learning Approaches, Parth Bhatt, Ann Maclean Feb 2023

Comparison Of High-Resolution Naip And Unmanned Aerial Vehicle (Uav) Imagery For Natural Vegetation Communities Classification Using Machine Learning Approaches, Parth Bhatt, Ann Maclean

Michigan Tech Publications

To map and manage forest vegetation including wetland communities, remote sensing technology has been shown to be a valid and widely employed technology. In this paper, two ecologically different study areas were evaluated using free and widely available high-resolution multispectral National Agriculture Imagery Program (NAIP) and ultra-high-resolution multispectral unmanned aerial vehicle (UAV) imagery located in the Upper Great Lakes Laurentian Mixed Forest. Three different machine learning algorithms, random forest (RF), support vector machine (SVM), and averaged neural network (avNNet), were evaluated to classify complex natural habitat communities as defined by the Michigan Natural Features Inventory. Accurate training sets were developed …


Fine-Scale Mapping Of Natural Ecological Communities Using Machine Learning Approaches, Parth Bhatt, Ann Maclean, Yvette Dickinson, Chandan Kumar Jan 2022

Fine-Scale Mapping Of Natural Ecological Communities Using Machine Learning Approaches, Parth Bhatt, Ann Maclean, Yvette Dickinson, Chandan Kumar

Michigan Tech Publications

Remote sensing technology has been used widely in mapping forest and wetland communities, primarily with moderate spatial resolution imagery and traditional classification techniques. The success of these mapping efforts varies widely. The natural communities of the Laurentian Mixed Forest are an important component of Upper Great Lakes ecosystems. Mapping and monitoring these communities using high spatial resolution imagery benefits resource management, conservation and restoration efforts. This study developed a robust classification approach to delineate natural habitat communities utilizing multispectral high-resolution (60 cm) National Agriculture Imagery Program (NAIP) imagery data. For accurate training set delineation, NAIP imagery, soils data and spectral …


Machine Learning Applications In Microbial Ecology, Human Microbiome Studies, And Environmental Monitoring, Ryan B. Ghannam, Stephen Techtmann Jan 2021

Machine Learning Applications In Microbial Ecology, Human Microbiome Studies, And Environmental Monitoring, Ryan B. Ghannam, Stephen Techtmann

Michigan Tech Publications

Advances in nucleic acid sequencing technology have enabled expansion of our ability to profile microbial diversity. These large datasets of taxonomic and functional diversity are key to better understanding microbial ecology. Machine learning has proven to be a useful approach for analyzing microbial community data and making predictions about outcomes including human and environmental health. Machine learning applied to microbial community profiles has been used to predict disease states in human health, environmental quality and presence of contamination in the environment, and as trace evidence in forensics. Machine learning has appeal as a powerful tool that can provide deep insights …


A Review Of Integrative Imputation For Multi-Omics Datasets, Meng Song, Jonathan Greenbaum, Joseph Luttrell, Weihua Zhou, Chong Wu, Hui Shen, Ping Gong, Chaoyang Zhang, Hong Wen Deng Oct 2020

A Review Of Integrative Imputation For Multi-Omics Datasets, Meng Song, Jonathan Greenbaum, Joseph Luttrell, Weihua Zhou, Chong Wu, Hui Shen, Ping Gong, Chaoyang Zhang, Hong Wen Deng

Michigan Tech Publications

Multi-omics studies, which explore the interactions between multiple types of biological factors, have significant advantages over single-omics analysis for their ability to provide a more holistic view of biological processes, uncover the causal and functional mechanisms for complex diseases, and facilitate new discoveries in precision medicine. However, omics datasets often contain missing values, and in multi-omics study designs it is common for individuals to be represented for some omics layers but not all. Since most statistical analyses cannot be applied directly to the incomplete datasets, imputation is typically performed to infer the missing values. Integrative imputation techniques which make use …