Life Sciences Commons^™

Forest Regeneration On The Osa Peninsula, Costa Rica, Manette E. Sandor

Master's Theses

Woody species diversity of secondary forest has the potential to converge with that found in old growth forest. This study is the first to examine multiple aspects of species and reproductive trait diversity, and their relationship to each other, across a successional chronosequence. Species richness and species diversity increases with increasing age of forest. Diaspore size and diversity as well as fruit size generally increased with increasing age of forest, but fruit size diversity did not. Abundance of animal-dispersed species increased whereas wind-dispersed species decreased in abundance over succession. Insect-pollinated individuals were most abundant overall. Diaspore diversity, pollination diversity, and …

Detection Of Genomic Inversion From Single End Read, Pankaj Ghimire

Master's Theses

Structural Variations (SVs) are genomic rearrangements that include both copy-number variants,such as insertion,deletions, duplications and balanced variants like inversion and translocations. These SVs are getting more attentions for research and investigation because of their role on human phenotype, genetic diseases and genomic rearrangements. Evolution of Next-generation Sequencing has provided golden opportunities to investigate these variants and make their wider and clear spectrum in human genome. This investigation includes identification of type of SVs and their breakpoints at base pair level. For their effective identification and breakpoint resolution, many techniques are devised mainly based on paired end read. With relatively low …

Effects Of Neonatal Hypoxic Ischemic Brain Injury On Spatial Working Memory, Amanda L. Smith

Master's Theses

Children born prematurely or at very low birth weight (VLBW) have an increased risk for hypoxic ischemic brain injury (HI). HI refers to a lack of adequate blood and oxygen flow in the brain. HI can also occur in the term infant due to birth complications such as prolonged labor, placental dysfunction, or cord prolapse. In both populations (though exact patterns of neuropathology vary) brain damage is likely to occur in the form of decreased hippocampal and cortical volume, and enlargement of the ventricles (Kesler et al., 2004, Nagy et al., 2009). Resulting neuropathology can in turn lead to cognitive …

Tremulous Jaw Movements Induced By The Vmat2 Inhibitor Tetrabenazine, Samantha J. Podurgiel

Master's Theses

Parkinsonism is a movement disorder characterized by several cardinal motor symptoms: resting tremor, akinesia, bradykinesia, rigidity, and postural instability. Parkinsonian resting tremor can be modeled in rodents using the tremulous jaw movement model. Tremulous jaw movements (TJMs) are defined as “rapid vertical deflections of the lower jaw that resemble chewing but are not directed at any particular stimulus.” TJMs occur in a frequency range of 3-7 Hz and are induced by a number of pharmacological manipulations that parallel those seen in human Parkinsonism including dopamine (DA) depleting agents, DA antagonists, and cholinomimetic administration. Additionally, TJMs can be attenuated using antiparkinsonian …

Theta Dynamics: Speed, Acceleration And Contribution To Cognition, Lauren L. Long

Master's Theses

No abstract provided.

An Analysis Of Human Disturbance To Rocky Intertidal Communities Of San Luis Obispo County, Grant Tyler Waltz

Master's Theses

ABSTRACT

An Analysis Of Human Disturbance To Rocky Intertidal Communities Of San Luis Obispo County

Grant Tyler Waltz

The number of coastal areas open to public access in California and San Luis Obispo County is increasing due to the acquisition by California State Parks of land previously owned by private entities. For example, California State Parks acquired property from the Hearst Corporation in 2005, which included 18 miles of coastline. California State Parks is responsible for providing public access in these newly acquired areas and also for maintaining the health of the natural systems found on these properties. Part of …

Effects Of Silvicultural Management On Coast Redwood Forest Composition, Density And Structure In Santa Cruz And San Mateo Counties, Michael J. Papa

Master's Theses

The multiple-objective exploratory study investigates effects of various silvicultural management regimes commonly applied to coast redwood (Sequoia sempervirens [D. Don] Endl.) forests in Santa Cruz and San Mateo Counties, California, USA. A temporary forest inventory was installed in 24 harvest origin stands and 4 natural origin stands throughout the study area (sample area = 1189 acres). Data from the systematic sample of 233 one-quarter acre nested cluster plots (sample intensity = 4.9%) rendered overall forest descriptions in terms of species composition, density, and structure. The common forestry measures of trees per acre (TPA), basal area per acre (BA), and …

Identifying And Characterizing Non-Coding Rnas In The Dinoflagellate Karenia Brevis, Helen Namataka

Master's Theses

When algal cells proliferate and accumulate in marine and fresh water systems, they form algal blo'oms. The majority of these blooms are beneficial, but a significant number are detrimental and are known as harmful algal blooms (HABs). A number of negative effects, including closing of recreational beaches and economic loss, are observed during HABs. Predictably, the longer a bloom persists, the greater its effects on human, environmental and economic health. Karenia brevis, a mixotrophic dinoflagellate, forms HABs, and blooms caused by this organism have been known to remain several months after formation. For these reasons, research has been conducted to …

Fungal Biofilm Colonization And Succession On Artificial Reefs In The North-Central Gulf Of Mexico, Amy Leigh Salamone

Master's Theses

This study represents the first characterization of natural mixed-species fungal biofilm communities on artificial reefs in the marine environment. Previous fungal biofilm studies have failed to observe the naturally-occurring biodiversity in coastal areas, which comprise the most utilized zone of the marine environment. Artificial reefs can increase fishing yields, amplify oyster habitats, contribute to shoreline stabilization, promote good water quality, and deter pollution. Proper management practices of artificial reefs require knowledge of the colonization of these new habitats by marine organisms and their subsequent succession. Fungi, along with bacteria, archaea, protists, algae, and diatoms, quickly form a complex biofilm on …

Mortality Assessment Of Redwood And Mixed Conifer Forest Types In Santa Cruz County Following Wildfire, Steve R. Auten

Master's Theses

On August 12, 2009, the Lockheed Fire ignited the west slope of the Santa Cruz Mountains burning approximately 7,819 acres. Foresters and other land managers were left with challenging decisions on how to evaluate tree mortality. Big Creek Lumber Company, California Polytechnic State University, San Luis Obispo (Cal Poly)’s Swanton Pacific Ranch (SPR), and other resource professionals familiar with this region teamed up to develop a method for evaluating damage and thereby mortality for redwood, California nutmeg, live oak, tanoak, California bay, Pacific madrone, big leaf maple, Douglas-fir, Monterey pine, and knobcone pine. Quantitative damage criteria were used to design …

Post-Fire Mortality And Response In A Redwood/ Douglas-Fir Forest, Santa Cruz Mountains, California, Garren M. Andrews

Master's Theses

We investigated how fire severity impacts the survival and response (sprouting/seeding) of multiple species in the Santa Cruz Mountains of coastal California, including coast redwood (Sequoia sempervirens), Douglas-fir (Pseudotsuga menziesii), tanoak (Lithocarpus densiflorus), and Pacific madrone(Arbutus menziesii). During August 2009 the Lockheed Fire burned nearly 3,160ha of mixed-conifer stands with variable severity. Data from 37 Continuous Forest Inventory (CFI) plots were collected immediately before and for 2 successive years following the 2009 Lockheed Fire.

This research entails three objectives. First, we quantified post-fire mortality of trees that vary in species, size, and …

Low Cost Neurochairs, Frankie Pike

Master's Theses

Electroencephalography (EEG) was formerly confined to clinical and research settings with the necessary hardware costing thousands of dollars. In the last five years a number of companies have produced simple electroencephalograms, priced below $300 and available direct to consumers. These have stirred the imaginations of enthusiasts and brought the prospects of "thought-controlled" devices ever closer to reality. While these new devices were largely targeted at video games and toys, active research on enabling people suffering from debilitating diseases to control wheelchairs was being pursued. A number of neurochairs have come to fruition offering a truly hands-free mobility solution, but whether …

House Finches, Carpodacus Mexicanus: Hormones, Stress, And Song Control Regions, Katherine Olivia Ganster

Master's Theses

Song production in songbirds is controlled by parts of the brain known as the song control regions (SCRs). During spring, gonads increase in size, males sing to attract mates, and SCRs become larger. This neuroplasticity is controlled by the change in day length and increased plasma testosterone (T) levels. Plasma T can be reduced by stress through the production of corticosterone (CORT), through the production of beta-endorphin, or through direct effects on the testes via the nervous system. We determined the T, estradiol, and CORT hormonal profiles of wild House Finches by capturing and sampling blood from the finches every …

Burrowing Owl (Athene Cunicularia) Nesting Ecology In Western Kansas, Carol D. Grover-Mariner

Master's Theses

The Burrowing Owl (Athene cunicularia) is a common occupant of Smoky Valley Ranch located in Logan County, Kansas, where the abundance of black-tailed prairie dog (Cynomys ludovicianus) burrows provides ideal habitat for the Burrowing Owl. The objectives of the study were to 1) estimate the densities of black-tailed prairie dog colonies through visual counts, 2) estimate nesting success and nest survival probabilities of the Burrowing Owl with the use of a burrow camera, and 3) estimate post-fledging dispersal and return rate of juvenile Burrowing Owl the following season. I located 96 potential nests from 24 March through 2 July 2007 …

The Relationship Between Liv-1 And E-Cadherin (Cdh1) In Prostate Cancer Cells, Lei Cao

Master's Theses

BACKGROUND

The zinc importer LIV-1 is widely distributed, mainly in hormonally controlled tissues. Attention has focused on its role in breast cancer, especially its regulation by estrogen and epidermal growth factor (EGF) and its link to the Epithelial–Mesenchymal Transition (EMT) marker, E-cadherin (CDH1). EMT is important for tumor progression and metastasis. CDH1 expression is under complex control, including by two transcriptional repressors, Snail and Slug. Contrast to CDH1, elevated MMP-9 expression has been linked to increased metastasis and tumor stage.

METHODS

The role of LIV-1 in prostate cancer cell lines, LNCaP and DU145 was investigated. Cells were treated with or …

Biochemical Evaluation Of Srh Analogs As Potential Luxs Inhibitors, Richa Gupta

Master's Theses

Quorum sensing in bacteria is a process of cell-to-cell communication facilitated by small molecules called autoinducers. Interspecies quorum sensing is facilitated by the autoinducer AI-2. The enzyme LuxS catalyzes the formation of AI-2 from S-ribosyl homocysteine (SRH) in a wide variety of bacterial species. Inhibition of LuxS would therefore inhibit interspecies quorum sensing. The goal of this project is to establish biochemical assays for the evaluation of small molecules as potential LuxS inhibitors. The first assay is a conventional colorimetric assay that utilizes Ellman’s reagent to quantify the homocysteine byproduct of DPD production by LuxS. For this assay purified …

Green Tea Extract Protects Against Fibrogenesis Associated With Nonalcoholic Fatty Liver Disease In Diet-Induced Obese Rats, Allyson M. Bower

Master's Theses

No abstract provided.

Immunostimulatory And Cellular Toxic Effects Of Single-Stranded Rna On Cancer Cells, Chengwen Teng

Master's Theses

Whether 5'-triphosphate-single-stranded-RNA (5 '-ppp-ssRNA) is immunostimulatory was controversial in the literature. In order to clarify the immunostimulatory effect of 5'-ppp-ssRNA, we synthesized ssRNAs and tested the IFNp (interferon-beta) level and cellular toxicity of ssRNAs in SKOV3 cells. In this work, we confirmed that 5'-ppp-ssRNA (~ 60nt) was immunostimulatory and toxic in SKOV3 cells. 5'-ppp-ssRNA (~ 60nt) led to IFN-P induction and apoptosis in SKOV3 cells. Longer 5' ppp- ssRNA tended to have a higher immunostimulatory effect and cellular toxicity than shorter 5'-ppp-ssRNA. 5'-ppp-ssRNA was more immunostimulatory and toxic than 5'- 0H-ssRNA. If the incubation time of ssRNAs increased, the toxicity …

Effects Of Hurricane Disturbance On The Stopover Ecology Of Intercontinental Landbird Migrants In Coastal Louisiana, Emily Johanna Lain

Master's Theses

Few studies have considered the impact of weather events on migratory birds during stopover, and essentially none on how hurricanes affect their stopover biology during spring passage. About two thirds of eastern North American forest breeding bird species migrate twice annually between temperate breeding areas and subtropical and tropical wintering grounds, and movement in relation to the Gulf of Mexico (GOM) is a conspicuous and important part of that migration system. During inclement weather or winds inconsistent with travel direction, migratory birds oft.en/a/lout and concentrate by the thousands in forest patches that occur along the northern coast of the GOM. …

Phase Speciation Of Carbohydrates And Dioxins In Rivers And Coastal Waters In The Northern Gulf Of Mexico, Kusumica Mitra

Master's Theses

Dissolved carbohydrates (d-CHO), including monosaccharide (MCHO) and polysaccharides (PCHO), and particulate carbohydrates (p-CHO) are major components of natural organic matter and play an important role in biogeochemical cycles of carbon and other trace elements in marine environments. This study aimed to examine the abundance and partitioning of CHO between dissolved and particulate phases and their seasonal variations in the Mississippi Sound/Bight and Lake Pontchartrain. Laboratory mixing experiments were also carried out to examine the behaviour of CHO species along a salinity gradient. The phase partitioning of dioxin among three different phases, i.e., colloidal organic matter, particulate organic matter and sediments, …

Determining The Trophic Role Of Gulf Menhaden (Brevoortia Patronus) Using Carbon And Nitrogen Stable Isotopes, Zachary Olsen

Master's Theses

Gulf menhaden (Brevoortia patronus) play multiple roles in the Gulf of Mexico coastal ecosystem as filter feeders and as an important food source for many recreationally and economically important finfish. Gulf menhaden also support a large commercial fishery, and little is known about the impact of fishing on the role of this species as a filter feeder in the food web. This study examines the spatial, temporal and ontogenetic dynamics of food selectivity and trophic role observed in Gulf menhaden. The most important dietary item for juvenile fish was found to be phytoplankton (75.7% dietary composition) while that of subadults …

Anode Material Testing For Marine Sediment Microbial Fuel Cells, Andrew John Quaid

Master's Theses

Research on the power production of the microbial fuel cell has increased in the past decade. The sediment microbial fuel cell is a type of fuel cell that uses the environment of submerged sediments to provide a natural voltage difference. The fuel cell is comprised of an anode buried in the sediment and a cathode that is held in the overlying water column. The process of electron transfer to the anode is catalyzed by anaerobic bacteria in the sediment. The anaerobic bacteria have that are able to catalyze the electron transfer have been termed exoelectrogenic. The increase in scientific research …

Aloe Striata Plant Defense Compounds Produced In Response To Jasmonic Acid, Salicylic Acid, And Eriophyid Mite Salivary Extract Elicitor Compounds, Fritz Light

Master's Theses

Aloe mites are herbivores of the genus Aloe (ALOACEAE) and are associated with hyperplastic growth in various aloe species, but the biochemistry of this interaction is poorly understood. In an effort to characterize plant defense responses to herbivory in the genus Aloe, a salivary extract was isolated from aloe mites (Aceria aloinis Keifer) and its bioactivity was tested using a hypocotyl elongation assay. Subsequently, Aloe striata plants were treated with jasmonic acid (JA), salicylic acid (SA), and the mite salivary extract. Using water and methanol, compounds of different polarity were extracted from aloe tissues that had been frozen …

In Vivo And In Vitro Digestibility Of A Complete Pelleted Feed In Horses, Cassandra Renee Sweeney

Master's Theses

ABSTRACT

COMPLETION OF AN IN VIVO DIGESTIBILITY TRIAL IN HORSES AND IN VITRO DIGESTIBILITY ASSAY DEVELOPMENT

Cassandra Renee Sweeney

In vivo analysis of equine feed digestibility has been the gold standard since the late 1800's, although it can be time consuming, costly, and labor intensive. In vitro digestibility analysis may be more economical and beneficial to both feed manufacturers and consumers. The availability of accurate in vivo data is crucial for critical evaluation and validation of any potential in vitro method (Coles et al., 2005). Ten adult American quarter horse geldings were used in the in vivo digestibility evaluation of …

Evaluating Macrobenthic Indicators Of Organic Enrichment And Hypoxia Within The Coastal Mississippi Hypoxic Zone, Daneen P. Menke

Master's Theses

Macrobenthic communities offer effective indicators of biotic integrity, but their use for distinguishing anthropogenic from natural stress is tricky because coastal taxa are eurytolerant. Effective coastal management calls for benthic indicators that respond to specific stressors, apply across different habitats, and reflect ecosystem function. Macrobenthic process metrics based on body-size descriptors should reflect ecosystem function and be useful for assessing the effects of eutrophication. Functional trait analysis should reflect the functional diversity of the community. Coastal Mississippi experienced widespread and sustained hypoxia throughout summer 2008. Site 6 located on the 10-m isobath in the center of the 2008 hypoxic zone …

Effects Of Compost, Legume Cover Cropping And Vermicompost Extract Foliar Applications On Nutrition And Yield Of Washington Navel Oranges, William Payton Carling

Master's Theses

ABSTRACT

Effects of Compost, Legume Cover Cropping and Vermicompost Extract Foliar Applications on Nutrition and Yield of Washington Navel Oranges

William Payton Carling

An experiment was conducted to test the effects of four treatments on Washington navel orange (Citrus sinensis) trees in regards to nutrient content of the leaves and fruit, soil nutrient content and properties, and fruit yield. The four treatments included: compost (C) and vermicompost extract foliar (VEF) applications, legume cover cropping (LCC) and VEF applications, VEF applications, and a control. The treatments were implemented from February 2010 to April 2011 and sampling occurred in May …

Dietary Protein Influences Paracellular Calcium Transport: Two Molecular Targets, Belinda M. Kotler

Master's Theses

The effect of dietary protein on bone health remains controversial. We have shown that increasing dietary protein increases calcium absorption in both humans and rats with no change in bone resorption. We used a rat model in which dietary protein increases intestinal calcium absorption and whole body calcium retention, to explore the molecular basis for this effect. Female Sprague-Dawley rats were fed a low (5%) or high (40%) protein diet for 7 days. On day 7, duodenal mucosa was harvested and total RNA isolated. Microarray analyses using these RNA samples identified 208 genes whose expression was at least 1.5 fold …

Diffusion Barriers Of The Lateral Ventricular System, Anitha Saravanakumar

Master's Theses

Adult neurogenesis in mammalian brain has become a well-accepted phenomenon. The neural stem cells in the sub ventricular zone (SVZ) along the lateral wall of the lateral ventricle, the largest germinal center of adult neurogenesis, are maintained by the neural stem cell niche. One prominent feature of the niche is its close proximity to the cerebral spinal fluid (CSF). The role of micromolecules (such as ions, water and gases) present in the CSF and diffusing through the lateral ventricular wall and how the stem cell micro-environment is maintained is poorly understood. The cytoarchitecture of the lateral ventricular wall with a …

Continual Passage Of Staphylococcus Epidermidis In Subinhibitory Levels Of The Biocide Triclosan Results In A Marked Increase In The Minimum Inhibitory Concentration, Antibiotic Resistance, And Ethidium Bromide Resistance, William T. Moore

Master's Theses

Triclosan is a multi-purpose biocide that is used in many personal care products, including antibacterial hand soaps and toothpastes. The wide usage of triclosan fosters its dispersal into the enviro11l11ent, which might contribute to the ability of microorganisms to become resistant to triclosan in addition to certain other biocides and clinical antibiotics. The aim of this study was to evaluate whether long-term exposure of two strains of Staphylococcal epide]'midis to subinhibitory concentrations of triclosan would select for resistant mutants, and whether their ability to form polysaccharide biofilms lends to this resistance. This study also aimed to determine whether a mutation …

Distributional Survey And Habitat Associations Of Crayfishes In Three River Basins In Kansas, Ryan Lee Pinkall

Master's Theses

Kansas represents the western most edge of high crayfish diversity in North America. The most recent comprehensive survey of crayfishes in Kansas was conducted over 50 years ago and resulted in a list of seven species. Subsequently, three species were added sporadically. The most recent summary of crayfishes in Kansas included 10 species and suggested the highest diversity to be located in the northeastern portion of the state. I surveyed crayfishes in three river basins in Kansas during the summers of 2009, 2010, and 2011: Kansas-Lower Republican, Missouri, and Upper Republican. Sites were selected based on stream order and partitioned …