Life Sciences Commons^™

Soil-Grapevine Interactions: Insight From Verdicchio In The Marche Wine Region, Italy, Megan Luna Barlow

Theses and Dissertations

Verdicchio is a white grape varietal notably grown in the Marche wine region of east-central Italy within two Denominazione Origine Controllata (DOCs); Castelli di Jesi and Matelica, located less than 50 km apart. Jesi lies in the Apennine foothills near the coast of the Adriatic Sea and produces a smooth wine noted with apple-pear undertones and crisp, clean acidity. Conversely, Matelica is located in a synclinal valley of a fold-and-thrust belt and produces stronger wine with penetrating floral aromas and bold acidity. While macro-climatic variations do exist between DOCs, this research focuses on geological variations, specifically variations in soil composition, …

Association Of Childhood Blood Lead Levels With Firearm Violence Perpetration And Victimization, Lindsay Rae Emer

Theses and Dissertations

Over 10,000 Americans are killed in firearm homicides each year, and an additional 40,000 are injured in nonfatal shootings. There is a significant public health need to identify risk factors that can be modified to prevent firearm violence. Environmental lead exposure is a demonstrated neurotoxicant which causes behavior changes that are known to be criminogenic. More recent research has demonstrated that homicides and nonfatal shootings differ by the circumstances that lead to the shootings (i.e. gang, domestic violence, arguments) and aggregating them could lead to biased results. Although studies have found a relationship between childhood lead exposure and criminal behaviors, …

Rescuing Age-Related Proteolysis Deficits With Methylene Blue, Shane E. Pullins

Theses and Dissertations

The average lifespan is constantly increasing with the advent of new medical techniques, and age-related cognitive decline is becoming a prevalent societal issue. Even during healthy aging, humans and rats exhibit progressive deficits in episodic/declarative memory. In laboratory rats, age-related memory impairment can be assessed with trace fear conditioning (TFC). Recent research implicates ubiquitin proteasome system-mediated protein degradation in the synaptic plasticity supporting memory formation and retrieval. In rats, aging leads to decreased basal proteolytic activity in brain structures known to support the acquisition and retrieval of trace fear memories, and our preliminary data suggests activity-dependent proteasome activity declines in …

The Role Of Hippocampal And Medial Prefrontal Interactions In The Estrogenic Regulation Of Memory, Jennifer Tuscher

Theses and Dissertations

Dendritic spine plasticity is thought to be essential for the formation and storage of memories. The sex-steroid hormone 17-estradiol (E2) increases dendritic spine density in 2 brain regions necessary for memory formation, the dorsal hippocampus (DH) and medial prefrontal cortex (mPFC), but the mechanisms through which it does so remain largely unknown. Further, the extent to which these brain regions interact to mediate E2’s effects on memory is also unclear. Recently, we found that infusion of E2 directly into the DH also increases dendritic spine density in the DH and mPFC, and that these effects depend upon rapid activation of …

Structure-Function Relationships In Bacterial Regulatory Proteins And An Enzyme Involved In Antibiotic Biosynthesis, Lanlan Han

Theses and Dissertations

The first part of my thesis is focused on a new family of two-component response regulator proteins: Aspartate-Less Regulators (ALR). They lack the catalytic aspartate residue required for the phosphorylation mechanism of typical two component response regulators. We are using biophysical tools to characterize two proteins with redox-sensitive ALR domains: repressor of iron transport regulator (RitR) from Streptococcus pneumonia R6 and diguanylate cyclase Q15Z91 from Pseudoalteromonas atalantica. The structure of inactive RitRC128S monomer showed that the ALR domain and the DNA-binding domain are linked by an α-helix that runs the length of the entire protein, with C128 near the C-terminal …

River Influence On The Nearshore Ecosystem Of Western Lake Superior, Joshua Delvaux

Theses and Dissertations

As the interface between the terrestrial landscape and the open lake, nearshore areas of the Great Lakes play an important role in modulating whole-lake response to inputs of nutrients and energy from the watershed. These inputs occur primarily via tributary loading, and so it is critical to understand the dynamics of river plumes and the fate of organic carbon and nutrients delivered in the plumes. To assess the influence of river plumes on the biogeochemistry and metabolism of the Lake Superior nearshore zone, the spatial and temporal distribution of turbidity, nutrients, phytoplankton, dissolved oxygen, and dissolved carbon dioxide were measured …

Influence Of Expectations Of Aging On Older Women’S Use Of Dietary Supplements Using The Health Promotion Theory, Barbara Emily Hekel

Theses and Dissertations

The use of vitamins, minerals and herbal supplements by older adults is increasing and changing. There are concerns about supplement quality, safety, and vitamin D overuse. Little is known about supplement use by nursing home residents and about factors that influence older women to use supplements. The current study describes the supplement use of 247 nursing home residents and 110 independent living women 65 years or older in the Midwestern United States. A secondary analysis of 247 medication administration records describes the prevalence of vitamin, mineral, and herbal supplement use of nursing home residents. Using the health promotion theory, the …

Sex Differences In Differential Fear Conditioning During The Acquisition And Consolidation Of Learned Safety, David Sylvan Reis

Theses and Dissertations

The ability to distinguish between threatening and non-threatening situations requires careful regulation of behavioral and physiological responses to stress and fear. Deficits in fear regulation are maladaptive and can lead to the development of anxiety disorders such as PTSD. Women are nearly twice as likely to develop PTSD as are men and laboratory animal studies have shown facilitated fear acquisition, resistance to fear extinction, deficits in extinction retention and impaired discrimination between danger and safety cues in females. Taken together this suggests a propensity for reduced inhibitory control over fear responding in females. Here we investigate the mechanisms underlying fear …

A Hemimysis Driven Novel Ecosystem At A Modified Boulder Breakwall, Eric John Geisthardt

Theses and Dissertations

The US Army Corps of Engineers (USACE) is mandated to maintain and repair aging breakwall structures in all commercial ports on the Great Lakes. In May of 2014, the construction of Milwaukee Harbor USACE “green” breakwall (GBW) reconciliation created complex rocky aquatic habitat by depositing cobble-sized stone as a veneer over standard 6-10 ton boulders, thus creating “control” (boulder) and “treatment” (cobble) habitats. The breakwall is home to a prolific population of Hemimysis anomala, the introduced Ponto-Caspian mysid, which is significantly more abundant on cobble versus boulders (p<0.05, using a novel trap for Hemimysis). Fish and forage communities were sampled in 2015 and 2016 using a combination of experimental and micromesh gill nets, night scuba diving surveys, and a novel Hemimysis trap. This nearshore lithophilic mysid appears to provide a significant new seasonal food resource in the Milwaukee Harbor for pelagic prey fishes during inshore spawning migrations and upwelling events. Alewife (Alosa pseudoharengus) and rainbow smelt (Osmerus mordax) fed heavily on Hemimysis with some individuals consuming hundreds of mysids. Night scuba diving surveys and gill netting confirmed that rainbow smelt preferred to forage on the cobble section (p<0.05), and also consumed more Hemimysis there than they did at the control breakwall site (p<0.05). Hemimysis were also the primary food item consumed by nearshore game fishes such as YOY yellow perch (Perca flavescens), YOY largemouth bass (Micropterus salmoides), and juvenile rock bass (Ambloplites rupestris) caught at the breakwall. This study provides the first documented evidence that where abundant in the Laurentian Great Lakes, Hemimysis do have the ability to significantly impact local food webs and drive the feeding ecology of both pelagic transient and nearshore resident fishes.

An Inducible Fluorescent Reporter System To Measure Lux Operon Promoter Activity, Nicole Thunes

Theses and Dissertations

Bioluminescence is the enzymatic production of light by a living organism. Many species of marine bacteria produce light with varying degrees of brightness. The lux operon is responsible for bioluminescence and is well studied, however it is currently unknown why different species of bacteria display different brightness levels. A dual-plasmid system designed to mimic the quorum-sensing induction of the lux operon was created and successfully implemented in E. coli. This was accomplished through the use of an arabinose-inducible plasmid containing a luxR gene from Vibrio harveyi, and then using the resulting LuxR protein to activate the lux promoter in a …

Interaction With Nitric Oxide Of The Nitrosomonas Europaea Tetraheme Protein Cytochrome C554, And Two Of Its Variants, In Increasingly Reducing Environments, Jennifer M. Mcgarry

Theses and Dissertations

A re-investigation of the interaction with NO of the small tetraheme protein cytochrome c554 (C554) from Nitrosomonas europaea has shown that the 5-coordinate heme II of the 2-electron or 4-electron reduced protein will nitrosylate reversibly. The nitrosylation process was found to be first order in C554, first-order in NO, and second-order overall. The rate constant for NO binding to the heme was determined to be 3000 ± 140 M-1s-1, while the rate constant for dissociation was 0.034 ± 0.009 s-1; the degree of protein reduction does not appear to significantly influence the nitrosylation rate. In contrast to a previous report, …

Histone Deacetylase Inhibition Induces Apoptosis And Cell Cycle Dysregulation In Human And Murine Cancer Cell Lines, Joseph Skurski

Theses and Dissertations

Carcinogenesis is a complex multistep process that requires tumor cells to grow rapidly while overcoming growth inhibitory signals and sustained challenges from the host immune response. Mutations within promoter or enhancer regions, along with epigenetic changes, can induce aberrant expression of genes that regulate differentiation, cell cycle, and apoptosis, all of which enhance potential for cellular transformation. In recent years, our understanding of the biological processes that influence the activation and repression of transcription have evolved to highlight the role of chromatin architecture, and how chromatin remodeling may be utilized for the potential therapeutic benefit of genetic disease. Histone deacetylase …

Part – I: Development Of A Two-Step Regiospecific Synthetic Route For Multigram Scale Synthesis Of Β-Carboline Analogs For Studies In Primates As Anti-Alcohol Agents,Part – Ii: Design And Synthesis Of Novel Antimicrobials For The Treatment Of Drug Resistant Bacterial Infections Part – Iii: A Novel Synthetic Method For The Synthesis Of The Key Quinine Metabolite (3s)-3-Hydroxyquinine, Veera Venkata Naga Phani Babu Tiruveedhula

Theses and Dissertations

PART – I

Development of a Two-Step Regiospecifc Synthetic Route for Multigram-Scale Synthesis of β-Carboline Analogs for Studies in Primates as Anti-Alcohol Agents

β-Carboline and their derivatives are important structural motifs in synthetic organic and medicinal chemistry because of their novel biological activity, especially in regard to the reduction of alcohol self-administration [binge drinking (BD)], a major problem increasing day by day in modern society. This anti-alcohol effect is proposed to be due to the activity of ligands at the benzodiazepine site of the GABAA receptor in the central nervous system acting as antagonists at the α1 subunit. The past …

Unsupervised Biomedical Named Entity Recognition, Omid Ghiasvand

Theses and Dissertations

Named entity recognition (NER) from text is an important task for several applications, including in the biomedical domain. Supervised machine learning based systems have been the most successful on NER task, however, they require correct annotations in large quantities for training. Annotating text manually is very labor intensive and also needs domain expertise. The purpose of this research is to reduce human annotation effort and to decrease cost of annotation for building NER systems in the biomedical domain. The method developed in this work is based on leveraging the availability of resources like UMLS (Unified Medical Language System), that contain …

New Insights Into The Role Of Antimicrobials Of Xenorhabdus In Interspecies Competition, Kristin Jean Ciezki

Theses and Dissertations

Xenorhabdus spp. are symbionts of entomopathogenic nematodes and pathogens of susceptible insects. The nematodes penetrate the insect midgut to enter the hemocoel where Xenorhabdus bacteria are released, transitioning to their pathogenic stage. During nematode invasion microbes from the insect gut translocate into the hemocoel. In addition, different species of nematodes carrying specific strains of Xenorhabdus can invade a single insect. Xenorhabdus spp thereby engage in competition with both related strains and nonrelated gut microbes. In complex media Xenorhabdus spp produce diverse antimicrobial compounds whose functions in biological systems remain poorly understood. R-type bacteriocins are contractile phage-tail-like structures that are bactericidal …

The Impact Of Stand-Biased Desks On After-School Physical Activity Behaviors In Children, Nathan Tokarek

Theses and Dissertations

The purpose of this study was to assess changes in after-school time spent performing sedentary behavior (SB), light intensity physical activity (LPA), and moderate to vigorous-intensity physical activity (MVPA) among elementary school children in response to the introduction of stand-biased desks in the classroom. Thirty-one 6th grade participants randomly assigned by their teacher to a traditional (CON) or stand-biased (INT) desk provided complete accelerometer data. After-school PA and SB were measured on four consecutive weekdays at baseline and 10-weeks. Wilcoxon Rank Sum Tests were used to detect significant differences (p<0.10) in changes in the proportion of after-school wear time performing SB and PA between groups. Results suggested no significant differences in changes in after-school time performing SB (p=0.770), LPA (p=0.740), or MVPA (p=0.470). Significant differences in the change in moderate PA (INT: -1.4%; CON: -0.2%, p=0.093) were detected. Stand-biased desks were not detrimental to children’s after-school PA and SB.

The Role Of Pilj And Its Structural Domains In The Localization And Function Of The Chp Chemosensory System In Pseudomonas Aeruginosa, Vibhuti Hemantkumar Jansari

Theses and Dissertations

Bacteria detect environmental signals using membrane-bound methyl-accepting chemotaxis proteins (MCPs), which are part of a larger complex of chemosensory proteins. Pseudomonas aeruginosa has four functionally distinct chemosensory protein complexes. The Chp chemosensory system regulates type IV pili mediated twitching motility and intracellular levels of cAMP by modulating the activity of an adenylate cyclase, CyaB. The Chp system is also proposed to be involved in type IV pili mediated directional twitching motility towards phosphatidylethanolamine (PE). PilJ is the only MCP predicted to be associated with the Chp system. In this study we investigated different domains of PilJ in order to decipher …

Biomedical Applications Of Mid-Infrared Spectroscopic Imaging And Multivariate Data Analysis: Contribution To The Understanding Of Diabetes Pathogenesis, Ebrahim Aboualizadeh

Theses and Dissertations

Diabetic retinopathy (DR) is a microvascular complication of diabetes and a leading cause of adult vision loss. Although a great deal of progress has been made in ophthalmological examinations and clinical approaches to detect the signs of retinopathy in patients with diabetes, there still remain outstanding questions regarding the molecular and biochemical changes involved. To discover the biochemical mechanisms underlying the development and progression of changes in the retina as a result of diabetes, a more comprehensive understanding of the bio-molecular processes, in individual retinal cells subjected to hyperglycemia, is required. Animal models provide a suitable resource for temporal detection …

An Array Of Circular Dielectrophoresis Traps To Separate And Charaterize Individual Microparticles From Population, Hwangjae Lee

Theses and Dissertations

Dielectrophoretic traps have been broadly studied in light of their many advantages of high controllability, ease of operation, and high efficiency. In the previous studies, however, it was challenging to count captured particles or required work to capture particles. In the thesis, an array of circular dielectrophoresis (DEP) traps was developed and tested to manipulate population of microparticles in single particle level. The circular DEP traps enable more precise control of the force field than conventionally used interdigitated electrodes due to its omnidirectional and symmetric properties. The location of the captured microparticle inside the trap was confirmed by both of …

Mitochondrial Regulation Of Yeast Ampk During Energy Stress, Aishwarya Shevade

Theses and Dissertations

In eukaryotes, members of the conserved AMP-activated protein kinase (AMPK) family play a pivotal role in sensing and responding to energy stress. Mammalian AMPK becomes activated when the AMP:ATP ratio is too high, and functions to prevent unnecessary ATP spending and to increase ATP production. Due to their role in ATP production through aerobic respiration, mitochondria are known to play an indirect role in the negative control of AMPK. The conserved voltage-dependent anion channel (VDAC) proteins, also known as mitochondrial porins, mediate the passage of small metabolites between the mitochondria and cytoplasm, including the release of ATP. One would therefore …

Microbial Communities And The Diverse Ecology Of Fecal Indicators At Lake Michigan Beaches, Danielle Cloutier

Theses and Dissertations

Fecal indicator bacteria (FIB) such as Escherichia coli (E. coli) and enterococci are used to assess microbiological water quality in recreational waters. The use of FIB follows the assumption that their presence correlates with that of fecal-associated pathogens in recreational waters. The beach ecosystem is complex however and multiple factors can influence the concentration of E. coli and enterococci in the beach environment. Microbial communities within beach sand play a key role in nutrient cycling and are important to the nearshore ecosystem function. E. coli and enterococci, two common indicators of fecal pollution, have been shown to persist in the …

Cyanobacteria And Cyanotoxin Ecology In Lakes And Drinking Water, Chelsea Weirich

Theses and Dissertations

Freshwater harmful algal blooms (FHABs) present a threat to ecological and public health in inland lakes. Problems associated with FHABs include human and animal illness, production of taste and odor compounds, and declining water quality and property values. Despite increased awareness and research on FHABs in recent decades, questions remain regarding long-term growth and diversity of FHABs in lakes that have taken measures toward slowing or reversing eutrophication, environmental factors impacting toxin occurrence, the most appropriate toxin analysis methods for protecting public health, and evidence for cyanotoxins detected in finished drinking water as a connection to exposure for potentially causing …

Towards Autonomous Microcystin Detection: Investigating Methods For Automation, Maureen Anne Schneider

Theses and Dissertations

Due to increased anthropogenic activity, severe eutrophication is occurring in bodies of water around the world. Effects include decreased water quality, decreased value of surrounding land and recreational use (estimated loss in revenue of 0.67 and 3.96 U.S. billion dollars per year), and increased occurrence of toxin producing Harmful Algal Blooms (HABs). Microcystins are cyclic peptides made up of 7 amino acids and 800-1100 Daltons in size. They are one of the most predominantly produced of these toxins, and therefore was the focus of this study. Numerous structural variants of microcystin (referred to as congeners) exist, but microcystin-LR is one …

The Role Of Phototaxis In The Initial Swim Bladder Inflation Of Larval Yellow Perch (Perca Flavescens)., Christopher Ryan Suchocki

Theses and Dissertations

The North Central Regional Aquaculture Center has designated the yellow perch (Perca flavescens) as a high priority species for culture. The demand for this species is high and it is estimated that the market could readily consume 50 to 100 million pounds per year. Tank culturing of yellow perch has several advantages over pond culture and this method has been growing in popularity, but is currently held back by problems in larval development. One of these problems, failed swim bladder inflation (SBI), is frequently reported in the literature as a bottleneck in the culture of many fishes. Unsuccessful SBI increases …

Targeting Of Flavobacterium Johnsoniae Proteins For Secretion By The Type Ix Secretion System, Surashree Sunil Kulkarni

Theses and Dissertations

Flavobacterium johnsoniae and many related bacteria secrete proteins across the outer membrane using the type IX secretion system (T9SS). Proteins secreted by T9SSs have amino-terminal signal peptides for export across the cytoplasmic membrane by the Sec system and carboxy-terminal domains (CTDs) targeting them for secretion across the outer membrane by the T9SS. Most but not all T9SS CTDs belong to family TIGR04183 (type A CTDs). This thesis focuses on the functional characterization of diverse CTDs for secretion by the F. johnsoniae T9SS. Fusion of the CTDs from F. johnsoniae RemA, AmyB, and ChiA to the foreign protein sfGFP that had …

Investigation Of Membrane Receptors’ Oligomers Using Fluorescence Resonance Energy Transfer And Multiphoton Microscopy In Living Cells, Ashish K. Mishra

Theses and Dissertations

Investigating quaternary structure (oligomerization) of macromolecules (such as proteins and nucleic acids) in living systems (in vivo) has been a great challenge in biophysics, due to molecular diffusion, fluctuations in several biochemical parameters such as pH, quenching of fluorescence by oxygen (when fluorescence methods are used), etc.

We studied oligomerization of membrane receptors in living cells by means of Fluorescence (Förster) Resonance Energy Transfer (FRET) using fluorescent markers and two photon excitation fluorescence micro-spectroscopy. Using suitable FRET models, we determined the stoichiometry and quaternary structure of various macromolecular complexes. The proteins of interest for this work are : (1) sigma-1 …

Ash Tree Identification Based On The Integration Of Hyperspectral Imagery And High-Density Lidar Data, Haijian Liu

Theses and Dissertations

Monitoring and management of ash trees has become particularly important in recent years due to the heightened risk of attack from the invasive pest, the emerald ash borer (EAB). However, distinguishing ash from other deciduous trees can be challenging. Both hyperspectral imagery and Light detection and ranging (LiDAR) data are two valuable data sources that are often used for tree species classification. Hyperspectral imagery measures detailed spectral reflectance related to the biochemical properties of vegetation, while LiDAR data measures the three-dimensional structure of tree crowns related to morphological characteristics. Thus, the accuracy of vegetation classification may be improved by combining …

A Novel Link Between The Chemotaxis And Biofilm Dispersion Systems Of Pseudomonas Aeruginosa, Jesse Michael Reinhardt

Theses and Dissertations

Bacterial chemotaxis is the movement of a cell towards an attractant or away from a repellent. This controlled movement is possible due to the chemotaxis system, which is typically made up of several proteins that collectively sense the stimuli and transduce the signal within the cell to mediate a motility response. The chemotaxis proteins of Pseudomonas aeruginosa are encoded in two clusters, which are located at different regions of the chromosome: che I and che V. These gene clusters are known to control chemotaxis via swimming, or flagellar-based, motility. When expressed, these chemotaxis proteins associate with each other to form …

Development Of Mechanosensory Innervation In The Frog, Xenopus Laevis, Peter Andrew Feuk

Theses and Dissertations

ABSTRACT

DEVELOPMENT OF MECHANOSENSORY INNERVATION IN THE FROG, XENOPUS LAEVIS

by

Peter Feuk

The University of Wisconsin-Milwaukee, 2017

Under the Supervision of Dr. R. David Heathcote

This study aims to investigate whether a specific target cell in the epidermis of the African clawed frog, Xenopus laevis, guides the initial outgrowth and pattern of Rohon-Beard (RB) cells and their survival. RB cells are primary mechanosensory neurons present during the early developmental stages of X. laevis. These neurons provide sensory input to the frog throughout embryonic and larval development before initiating apoptosis around the start of metamorphosis. The innervation of embryonic skin …

"Fanciful But Not Forgotten: A Historical Examination Of The Study Of The Flea, 1840-1930", Andrea Jean Buhler

Theses and Dissertations

Although the Victorian and Progressive periods saw a rise in entomological research, fleas were not a priority for scientific investigation. The discovery of fleas as disease vectors in the late nineteenth century marked a turning-point in interest in fleas. Expanding this standard history of fleas, the thesis probes flea research conducted outside the confines of disease during 1840-1930. It documents and analyzes the contributions of Louis Bertolotto, William Heckler, Charles Rothschild, Karl Jordan, and L. O. Howard. Whereas those working in the new profession of entomology saw fleas as disease vectors, these men had different relationships with fleas: Bertolotto and …