Life Sciences Commons^™

What We Talk About When We Talk About Food Systems: Discourse In An Emergent Field, Hailey Grohman

Food Systems Master's Project Reports

This project is made up of three distinct parts: a communications report from the 2016 UVM Food Systems Summit, a discourse analysis that uses the Summit as a text, and a narrative essay addressing the 2016 Summit's core question, "What Makes Food Good?" The three parts come together to form an analysis of communications within the discipline of food systems, one which grapples with emergent themes and issues in the field.

Agricultural Impacts On Rural Food Access In Vermont: A Situational Analysis And Ideas For The Future, Meghan E. Brooks

Food Systems Master's Project Reports

This project examines how the state of Vermont is working toward increasing rural food access through agricultural practices. Four Vermont organizations or farms were interviewed to better understand the successes and challenges associated with increasing rural food access. Next, a situational analysis was conducted to determine the feasibility of a community farm that assists low-income and low-access Vermont residents to obtain healthy, local food.

Characterization Of Inter-Animal Variation In The Innate Immune Response Of The Bovine And Its Relation To S. Aureus Mastitis., Aimee Benjamin

Graduate College Dissertations and Theses

Mastitis represents one of the major economical and animal welfare concerns within the dairy industry. Animals affected with this disease can experience a range of clinical symptoms from mild discomfort and swelling of the udder to a severe systemic inflammatory response that could result in the death of the animal. This range of responses is due to differences in pathogen, environment, and inter-animal differences in their innate immune response. A dermal fibroblast model was used to predict the magnitude of an animal's innate immune response towards an intra-mammary S. aureus challenge. Animals whose fibroblasts exhibited a low response phenotype, characterized …

From Nursery To Nature: Evaluating Native Herbaceous Flowering Plants Versus Native Cultivars For Pollinator Habitat Restoration, Annie White

Graduate College Dissertations and Theses

There is growing awareness about the value of preserving and restoring floral-rich habitats for the benefit of pollinators, especially native bees. The increasing demand for native plants in pollinator habitat restoration and other ecological landscaping applications, combined with the desire for more robust and predictable plant habits, have led to the selection and breeding of native cultivars. Yet, little is known about how these cultivated varieties differ from the native species in their ability to attract and support pollinators. I compared flower visitation by all insect pollinators to 12 native herbaceous plant species and 14 native cultivars in a replicated …

Examination Of The Effects Breed And Nutrition Have On The Milk Protein Profile Produced By Lactating Dairy Cattle, Rinske Tacoma

Graduate College Dissertations and Theses

Milk is a highly nutritious natural product and research over the last 10 years has proven that these milk proteins not only provide a rich source of amino acids to the consumer but also contains many bioactive proteins and peptides known to exert biological activity benefitting human health. In this research, proteomic methods were first used to characterize the low abundance proteome within the skim milk fraction produced by Holstein and Jersey dairy cows maintained under the same diet, management and environmental conditions. Milk samples were collected over a seven day period from six Holstein and six Jersey dairy cows. …

Barcoding The Actin Track: Differential Regulation Of Myosin Motors By Tropomyosin, Joseph Emerson Clayton

Graduate College Dissertations and Theses

Myosins and tropomyosins represent two types of actin filament-associated proteins that often work together in contractile and motile processes in the cell. While the role of thin filament troponin-tropomyosin complexes in regulating striated muscle myosin II is well characterized, the role of tropomyosins in non-muscle myosin regulation is not well understood. Fission yeast has recently proved to be a useful model with which to study regulation of myosin motors by tropomyosin owing to its tractable genetics, well-defined actin cytoskeleton, and established actin biochemistry.

A hallmark of type V myosins is their processivity -- the ability to take multiple steps along …

Role Of Interleukin-6 In Cd4 And Cd8 T Cell Effector Functions, Rui Yang

Graduate College Dissertations and Theses

IL-6 is an inflammatory cytokine that contributes to the pathogenesis of many immunological diseases including rheumatoid arthritis, multiple sclerosis, systemic lupus erythematosus, allergic asthma, as well as the protection against infections caused by various pathogens. These are linked to its role in regulating CD4 T cell differentiation and effector function.

Most of these functions are dependent on the IL-6-mediated signaling through the transcription factor Stat3. In this thesis, we identify a novel molecular mechanism by which IL-6 regulates CD4 T cell effector function. We show that IL-6-dependent signal raises the levels of mitochondrial Ca2+ late during activation of CD4 T …

A Role For Transforming Growth Factor-Beta In Urinary Bladder Dysfunction With Cyclophosphamide-Induced Cystitis, Eric James Gonzalez

Graduate College Dissertations and Theses

Bladder pain syndrome (BPS)/interstitial cystitis (IC) is a chronic pain disorder characterized by at least six weeks of lower urinary tract symptoms and unpleasant sensations (pain, pressure and discomfort) thought to be related to the urinary bladder and not meeting exclusion criteria. While the etiology is not known, BPS/IC may involve a "vicious circle" of uroepithelial dysfunction, inflammation and peripheral and central sensitization. We propose that the urinary bladder inflammatory insult partly mediates voiding dysfunction and visceral neurogenic pain characteristic of BPS/IC. Several studies from our laboratory have already demonstrated the role(s) of cytokines and their downstream targets in the …

Long-Term Forest Carbon Storage And Structural Development As Influenced By Land-Use History And Reforestation Approach, Andrea Rose Urbano

Graduate College Dissertations and Theses

Temperate forests are an important carbon sink, yet there is uncertainty regarding land-use history effects on biomass accumulation and carbon storage potential in secondary forests. Understanding long-term biomass dynamics is important for managing forests as carbon sinks and for co-benefits such as watershed protection and biodiversity. However there are many unanswered questions regarding these dynamics in northeastern U.S. forests: How have secondary forests of the U.S. Northeast recovered post nineteenth century agricultural abandonment? How has the region's extensive land-use history influenced long-term structural development and aboveground carbon storage? To answer these questions, we employed a longitudinal study based on twelve …

Learning Related Regulation Of A Voltage-Gated Ion Channel In The Cerebellum, Jason R. Fuchs

Graduate College Dissertations and Theses

The neural mechanisms that support learning and memory are still poorly understood. Much work has focused on changes in neurotransmitter receptor expression, while changes in voltage-gated ion channel expression have been largely unexplored, despite the fact that voltage-gated ion channels govern neuronal excitability. Here we used eyeblink conditioning (EBC) in rats, a model of learning and memory with a well-understood neural circuit, to examine regulation of voltage-gated ion channels as a consequence of learning. EBC is a form of classical conditioning that involves pairings of a behaviorally neutral conditioned stimulus (CS) and an eyeblink eliciting unconditioned stimulus (US) over many …

Functional Consequences Of Ama1-Ron2 Interaction During Host Cell Invasion By Toxoplasma., Shruthi Krishnamurthy

Graduate College Dissertations and Theses

T.gondii is a model organism of the phylum Apicomplexa that infects one third of the human population. While the majority of infections are asymptomatic or manifest with mild flu-like symptoms, toxoplasmosis can be fatal in immunocompromised individuals and in the developing fetus. The lytic cycle of tachyzoite-stage parasites causes damage to the host by repeated rounds of host cell invasion, intracellular replication and lysis of the host cell upon egress.

Invasion is a key step for the parasite to maintain its intracellular lifestyle. Apical Membrane Antigen 1 (AMA1) is an adhesin released from a unique set of secretory organelles called …

Protective Actions Of 5-Ht4 Receptors In The Colonic Epithelium, Stephanie Nicole Spohn

Graduate College Dissertations and Theses

5-HT4 receptors are expressed in colonic epithelium, and activation with 5-HT4 receptor agonists causes a number of responses, including mucus secretion from goblet cells, chloride secretion from enterocytes, and 5-HT release from enterochromaffin cells. We tested whether this receptor could serve a protective role in models of colitis and under basal conditions.

Male CD-1 mice (Charles River, Canada) were administered dextran sodium sulfate (DSS; 4% w/v in tap water, MW: 40,000) or trinitrobenzene sulfonic acid (TNBS; 7.5mg/mL in 50% ethanol by enema) on day 0. Treatment with the 5-HT4 receptor agonist, tegaserod (1 mg/Kg), or agonist plus the antagonist, GR113808 …

Definition Of Bovine Leukocyte Antigen Diversity And Peptide Binding Profiles For Epitope Discovery, Mital Pandya

Graduate College Dissertations and Theses

The goal of the work presented herein was to further our understanding of Bovine Leukocyte Antigen (BoLA) class I diversity of Holstein cattle and develop tools to measure class I restricted T cell responses to intracellular pathogens such as foot and mouth disease virus (FMDV) following vaccination. BoLA is a highly polymorphic gene region that allows the bovine immune system to differentiate pathogen-infected cells from healthy cells. Immune surveillance by CD8+ T cells plays an important role in clearing viral infections. These CD8+ T cells recognize BoLA class I molecules bearing epitopes (antigenic peptides) of intracellular origin in their peptide …

The Microbial Ecology Of Listeria Monocytogenes As Impacted By Three Environments: A Cheese Microbial Community; A Farm Environment; And A Soil Microbial Community, Panagiotis Lekkas

Graduate College Dissertations and Theses

This dissertation examined the microbial ecology of Listeria monocytogenes in three distinctly different environments: a cheese microbial community; a farm environment; and a soil microbial community.

The aim of the first study was to investigate the effects of L. monocytogenes on the composition of the surface microflora on washed rind soft cheese. Two trials with washed rind cheeses that were inoculated with 100cfu cm⁻² of a L. monocytogenes six strain cocktail were conducted. The first trial had to be terminated early (day 28) as contamination of Pseudomonas spp. from the initial brine did not produce the expected characteristics of the …

Edge-Of-Field Water And Phosphorus Losses In Surface And Subsurface Agricultural Runoff, Laura B. Klaiber

Graduate College Dissertations and Theses

Quantifying effectiveness of soil management practices on surface and subsurface water quality at the field scale is becoming increasingly important in the Lake Champlain Basin and other agricultural watersheds. During 2012 and 2013, field plots (22.9 x 45.7 m) were established at the Lake Alice Wildlife Area in Chazy, NY to begin a long-term water quality monitoring study. Plots were established in a cool season grass field (1 ha) leased and managed by the William H. Miner Agricultural Research Institute in Chazy, NY. The soil type transitions from an excessively drained outwash soil on the upslope to a very poorly …

A Multiscale Analysis Of The Factors Controlling Nutrient Dynamics And Cyanobacteria Blooms In Lake Champlain, Peter D. F. Isles

Graduate College Dissertations and Theses

Cyanobacteria blooms have increased in Lake Champlain due to excessive nutrient loading, resulting in negative impacts on the local economy and environmental health. While climate warming is expected to promote increasingly severe cyanobacteria blooms globally, predicting the impacts of complex climate changes on individual lakes is complicated by the many physical, chemical, and biological processes which mediate nutrient dynamics and cyanobacteria growth across time and space. Furthermore, processes influencing bloom development operate on a variety of temporal scales (hourly, daily, seasonal, decadal, episodic), making it difficult to identify important factors controlling bloom development using traditional methods or coarse temporal resolution …

Invasive Plant Ecology In Vermont: Insights From Spatial Analysis And Interactions Of Garlic Mustard (Alliaria Petiolata) With Native Plants And Invertebrates, Chenin Kathleen Limback

Graduate College Dissertations and Theses

Causes and patterns of invasive plant species establishment and success depend broadly upon their ecology, including habitat suitability and interactions with other plants and animals. Here I examine the traits and distribution of invasive plants in Vermont, using spatial analysis, laboratory and field studies. I used GIS to investigate environmental factors correlated with presence of 19 invasive plant species in Vermont campgrounds. My results support the assumption that human dispersal of invasive plant seed and stock may be more important than natural dispersal of these plant species to new sites. I also investigate in-depth the relationships of invasive herbaceous garlic …

Earthworms In Vermont Forest Soils: A Study Of Nutrient, Carbon, Nitrogen And Native Plant Responses, Ryan Melnichuk

Graduate College Dissertations and Theses

Anthropogenic activities surrounding horticulture, agriculture and recreation have increased dispersal of invasive earthworms. The introduction of earthworms initiates many physical and chemical alterations in forest soils previously unoccupied by earthworms. Three trials were performed to assess the effects of earthworms on soil-water dynamics, C and N and defensive/storage compound production by a native plant.

The first trial was a greenhouse experiment, performed to assess the impact of two ecologically contrasting invasive earthworm species on percolate and evaporative soil water loss. Mesocosms were constructed to simulate a typical forest Entisol commonly penetrated by the species of interest, Lumbricus terrestris and Amynthas …

Isolation Of Epicardial Cells From The Cover Of The Heart For Assessment Of Running Exercise-Induced Gene Expression, Laura Solomon

Graduate College Dissertations and Theses

The cover of the heart, or epicardium, consists of a single layer of mesothelial cells. During cardiac development, epicardial cells undergo Epithelial-to-Mesenchymal Transition (EMT) to form multipotent precursors known as epicardial-derived cells (EPDC). The EPDC migrate into myocardial tissue (containing cardiomyocytes) and subsequently differentiate into fibroblasts, myofibroblasts, and smooth muscle cells. In adult hearts, a similar process of epicardial cell proliferation, migration, and differentiation occurs after myocardial infarction (MI, heart attack). EPDC differentiation into vascular endothelial cells or cardiomyocytes is rare and not well understood. Recently, we observed that running (exercise) in mice promotes differentiation of EPDC into microvascular endothelial …

Novel Mechanisms Governing Autoregulation Of The Src Family Kinase Fyn And Its Crosstalk With Protein Kinase A, Marion Weir

Graduate College Dissertations and Theses

ABSTRACT

Phosphorylation is a post-translational modification important for regulating protein activity and protein binding capacity. It is used in many different signaling pathways within the cell. Src Family Kinases and Protein Kinase A (PKA) are two prototyptical non-receptor tyrosine and serine/ threonine kinases, respectively, which are found in canonical signaling pathways. These two kinases are critical for signaling in essentially every cell of a multicellular organism, and are particularly important in development, cell migration and proliferation. Although both proteins have been intensely studied for many decades, an understanding of the molecular mechanisms which govern their regulation and the regulation that …

Hiv-1-Induced Cell-Cell Fusion: Host Regulation And Consequences For Viral Spread, Menelaos Symeonides

Graduate College Dissertations and Theses

Human immunodeficiency virus type 1 (HIV-1) is a human retrovirus of the lentivirus subgroup which primarily infects T cells and macrophages, and causes acquired immune deficiency syndrome (AIDS). Since its emergence in the early 1980s, HIV-1 has caused a global pandemic which is still responsible for over one million deaths per year, primarily in sub-Saharan Africa.

HIV-1 has been the subject of intense study for over three decades, which has resulted not only in major advances in cell biology, but also in numerous drug treatments that effectively control the infection. However, cessation of treatment always results in reemergence of the …

Impact Of Subarachnoid Hemorrhage On Astrocyte Calcium Signaling: Implications For Impaired Neurovascular Coupling, Anthony Christ Pappas

Graduate College Dissertations and Theses

Deficits within the brain microcirculation contribute to poor patient outcome following aneurysmal subarachnoid hemorrhage (SAH). However, the underlying pathophysiology is not well understood. Intra-cerebral (parenchymal) arterioles are encased by specialized glial processes, called astrocyte endfeet. Ca2+ signals in the endfeet, driven by the ongoing pattern of neuronal activity, regulate parenchymal arteriolar diameter and thereby influence local cerebral blood flow. In the healthy brain, this phenomenon, called neurovascular coupling (NVC), matches focal increases in neuronal activity with local arteriolar dilation. This ensures adequate delivery of oxygen and other nutrients to areas of the brain with increased metabolic demand. Recently, we demonstrated …

Epicardial Cell Engraftment And Signaling Promote Cardiac Repair After Myocardial Infarction, Krithika Rao

Graduate College Dissertations and Theses

The epicardium is a single layer of epithelial (mesothelial) cells that covers the entire heart surface, but whose function in adult mammals is poorly understood. Defining the role of epicardial cells during homeostasis, growth and injury has potential to provide new treatment strategies for human diseases that result in heart failure, due to extensive loss of viable cardiac tissue. We hypothesized that epicardial cells contribute to repair as transplantable progenitor cells for cellular regeneration and as a source of secreted growth factors for cell protection after myocardial infarction.

Adult epicardial cells were prospectively isolated as uncommitted epithelial cells using epithelial-specific …

Exercise In Developing Rats Promotes Plasticity In The Prefrontal Cortex: Behavioral And Neurobiological Indications, Meghan Eddy

Graduate College Dissertations and Theses

Physical exercise has repeatedly been shown to trigger positive effects on brain function including improved learning, memory, and executive functions. In addition, corresponding physiological changes have been observed, such as increased neurotrophic factors, changes in neurotransmitter concentrations, and increased dendritic spines. However, these changes have not been well described outside of the hippocampus, including the medial prefrontal cortex (mPFC), and have not been directly compared at different points of development. Because the prefrontal cortex is one of the last brain areas to fully mature, considering the age at which intervention, such as exercise, takes place is particularly important. Additionally, in …

Phylogenetics And Molecular Evolution Of Highly Eusocial Wasps, Federico Lopez-Osorio

Graduate College Dissertations and Theses

Societies where workers sacrifice their own reproduction and cooperatively nurture the offspring of a reproductive queen caste have originated repeatedly across the Tree of Life. The attainment of such reproductive division of labor enabled the evolution of remarkable diversity in development, behavior, and social organization in the Hymenoptera (ants, bees, and wasps). Wasps of the family Vespidae exhibit a gamut of social levels, ranging from solitary to highly social behavior. The highly social yellowjackets and hornets (Vespinae) have well developed differences in form and function between queens and workers, large colony sizes, and intricate nest architecture. Moreover, certain socially parasitic …

Dcbld2/Esdn Is Essential For Proper Optic Tract Formation And Retinal Lamination, Ryan Mears Joy

Graduate College Dissertations and Theses

ABSTRACT

The Discoidin, CUB and LCCL domain-containing protein 2 (DCBLD2/ESDN/CLCP1) is a type-I, transmembrane receptor that mediates diverse cellular processes such as angiogenesis, vascular remodeling, cellular migration and proliferation. Identification of DCBLD2 in a proteomics screen to identify substrates of Src family tyrosine kinases that bind the Src homology 2 domain of CT10 regulator of kinase-Like (CrkL), a critical scaffolding protein for neuronal development, led to a need for further characterization of the protein. To elucidate the role of this interaction and potential novel function of DCBLD2, an in vivo approach utilizing Danio rerio (zebrafish) was conducted. dcbld2 was found …

The Role Of Kinesin-2 In Navigating Microtubule Obstacles: Implications For The Regulation Of Axonal Transport, Gregory Hoeprich

Graduate College Dissertations and Theses

Neurons are specialized cells that transmit information through electrical and chemical signals using structural processes known as dendrites and axons. Dendrites receive information for the cell to interpret while the exceedingly long axon transmits the processed information to its target destination. To ensure the neuron properly carries out its extracellular functions, the orchestration of intracellular cargo (e.g. mitochondria) is critical. This is especially true in the axon, which can be up to a meter in length. There are many challenges involved in the spatial and temporal regulation of cargo over such vast cellular distances. In order to accomplish cargo transport …

Management Practices And Communication Strategies To Improve Milk Fat And Protein Content On Dairy Farms, Melissa Elizabeth Woolpert

Graduate College Dissertations and Theses

Dairy farmers in the Northeastern Unites States are paid based on the amount of fat and protein in their cows' milk, and improving fat and protein production is linked with improved financial sustainability for dairy farms. However, not all farmers are motivated to make changes to increase milk fat and protein production. Previous research has identified a positive correlation between a group of fatty acids, known as the de novo fatty acids, and the fat and protein content of bulk tank milk from commercial dairy farms. Therefore, the first objective of this research was to explore the relationship of farm …

The Role Of Src Kinase Activation In Lung Epithelial Alterations In Response To The A,B-Unsaturated Aldehyde Acrolein, Robert Bauer

Graduate College Dissertations and Theses

Cigarette smoke (CS) exposure is the leading cause of preventable death in the United States contributing to over 480,000 deaths a year with over 300 billion dollars in CS related costs spent per year. While the dangers of CS exposure have been studied and characterized for decades being largely attributed to reactive oxygen species and oxidative stress, increasing evidence suggests that reactive aldehydes in CS, specifically the α,β-unsaturated aldehyde acrolein, are responsible for many of the negative pathologies associated CS exposure. Previous work has shown that acrolein can bind directly to a number of cellular proteins containing redox sensitive cysteine …

Ecological Dynamics In Compost-Amended Soils And The Resulting Effects On Escherichia Coli Survival, Anya Cutler

Graduate College Dissertations and Theses

Escherichia coli (E. coli) are common and typically innocuous copiotrophic bacteria found in the mammalian gut microbiome. However, over the past 30 years, pathogenic E. coli have been responsible for several outbreaks of foodborne illness linked to contaminated produce. The introduction of Escherichia coli to an agricultural soil, via contaminated water, compost, or raw manure, exposes the bacterium to a medley of ecological forces not found in a mammalian gut environment. This study assesses a variety of abiotic and biotic soil factors that influence the ability of an "invasive" copiotrophic coliform bacterium to survive in compost-amended agricultural soil. The study …