Life Sciences Commons^™

Validation Of A New Rapid Hybridization Buffer For Fluorescence In Situ Hybridization With A Review On The Kinetics Of Dna Hybridization, Christine O'Connor

Honors Scholar Theses

Abbott Molecular recently developed the rapid Vysis IntelliFISH Hybridization Buffer for use in fluorescence in situ hybridization (FISH) assays. The hybridization step in a standard FISH assay requires an overnight incubation, thus the turnaround time for a patient result is at least 24 hours. The IntelliFISH buffer was designed to reduce hybridization time of probes to target DNA to about two hours, allowing the entire assay to be performed in a single day. A review of methodologies and commercial products has highlighted the importance of hybridization kinetics to a successful FISH assay. The purpose of the research was to investigate …

Neuroscience Underlying Temporal Cue Discrimination In The Auditory Cortex, Samantha D. Rosicke

Honors Scholar Theses

Animals, including rats and humans, use the auditory cortex to discriminate auditory cues for communication and survival. It has been shown that individual neurons in the A1, ventral auditory field (VAF), and suprarhinal auditory field (SRAF) of the rat auditory cortex respond to different noise burst lengths to help the rat comprehend an auditory stimulus. In this experiment, we demonstrate the behavioral ability of male Long Evans rats to discriminate between noise bursts of different temporal lengths: 12 ms and 66 ms, in a Two-Alternative Forced Choice task. The study of temporal cue discrimination in the auditory cortex can be …

Targeted Germ Cell Knockdown Of Xlr3 In Mus Musculus, Caity Miller

Honors Scholar Theses

The X chromosome is rather distinct from autosomes due to the unique regulatory and functional characteristics it exhibits. Xlr3 is just one gene in a superfamily of highly related, and homologous genes found on the X chromosome in mice. Xlr3 is part of a complex, imprinted locus, of which the function is not well understood, although its protein product can be found in testis and oocyte. However, it is theorized that the region may be implicated in the progression of meiosis, due to localization of XLR3. This study sought to characterize the function of Xlr3 through the use of a …

Growth And Poverty Traps: Examples From Literature, Danielle Chaloux

Honors Scholar Theses

The writings of Charles Dickens, Emile Zola, Knut Hamsun, and Laura Ingalls Wilder capture humanity on the page. The characters in the works of these authors are confronted by realistic or autobiographical situations and make choices based on history, personal preferences, societal pressures, and economic constraints, just as real-life individuals do. They can thus serve as data for illustrating the implications of economic models, specifically poverty traps. To do so, I will draw from Great Expectations (1861) by Charles Dickens, The Fat and the Thin (1873) by Emile Zola, Hunger (1890) by Knut Hamsun, and The First Four Years (1971) …

Neurostructural Organization And Neocortical Projecting Neuron Distribution In A Mouse Model Of Timothy Syndrome-Mediated Autism Spectrum Disorder, Aiden L. Ford

Honors Scholar Theses

Aims: This study investigates the nuanced effect of the CACNA1C mutation on neurocognition and neurodevelopment via an extended study of the Timothy Syndrome (TS) mediated Autism Spectrum Disorder (ASD) mouse model – TS2-neo. It includes: (1) an expanded assessment of the TS2-neo behavioral phenotype, and (2) a comprehensive histological analysis of cortical structural and laminar features.

Methods: 24 age-matched male mice – 12 TS2-neo (B6.Cg-Cacna1c^tm2Itl, knock-in G406R mutation), 12 WT (C57BL/6J) – were tested on paradigms examining motor, socio-communicative and cognitive abilities. Neural tissue was processed for either volumetric analysis through Nissl stain (8 TS2-neo, 8 WT) or …

Comparison Of Feather Pigments In Red-Winged Blackbirds (Agelaius Phoenicus) Between Historical And Modern Samples, Genevieve Nuttall

Honors Scholar Theses

Coloration is vital to birds; it is involved in mating, territorial display, communication, camouflage, and predation. Birds rely on their environment for the raw materials necessary to make most colors present in their feathers. As a result, habitat quality can have lifetime fitness consequences through the color pathway. Widescale habitat change has affected the quality of habitats accessible to birds worldwide. Consequently, the availability of pigment-containing resources within many altered habitats has shifted, leading to modification in the coloration of some birds’ feathers. I hypothesized that the red pigmentation in the feather shoulders, or epaulets, of red-winged blackbirds (Agelaius …

Beyond Capture: Development And Validation Of A Method To Assess Body Condition In Mule Deer (Odocoileus Hemionus) Using Camera Traps, Rachel A. Smiley 6820420

Honors Scholar Theses

Advances in technology and availability associated with camera traps have resulted in a rapid rise in their use to monitor wildlife distribution, abundance, and behavior. We focus on assessing body condition, a new application of camera traps. Body condition indices must relate to the percent body fat if they are to be useful. To acquire measurements of body fat, most body condition indices require capture or mortality of animals to estimate, which has limitations when applied to free-ranging animals. We developed a non-invasive, visual body condition index (VBCI) to assess body condition of mule deer that can be applied …

Engineering A Fluorescent Protease Sensor For In Vivo Protein Detection, Thomas C. Kinard

Honors Scholar Theses

This report details the results of an ongoing project to engineer a mutant form of Red Fluorescent Protein (RFP) variant mCherry that acts as a real-time in vivo protease sensor. The sought-after mutant only becomes fluorescent when exposed to Tobacco Etch Virus (TEV) Protease, this system’s model protease. This will be accomplished via the insertion of the TEV Protease Recognition Site (TEV-PRS) in such a position that, before cleavage, will prevent the protein from folding to fluorescent conformation, but upon cleavage, will allow for fluorescent conformation to occur. The cylindrical structure of the protein, composed of beta-pleated sheets, contains “loops” …