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Alternative Treatment Options For Controlling Anthelmintic-Resistant Haemonchus Contortus Populations In South Dakota Sheep Herds, Adam Sarah Jan 2019

Alternative Treatment Options For Controlling Anthelmintic-Resistant Haemonchus Contortus Populations In South Dakota Sheep Herds, Adam Sarah

Electronic Theses and Dissertations

Haemonchus contortus is a common economically important gastrointestinal nematode that obliges the survival and productivity of small ruminants, especially sheep and goats. Anthelmintic resistance is a primary challenge in ruminant health management programs in preventing and controlling the H. contortus populations; therefore, there is a great necessity in finding and developing natural plant products for use as alternatives to commercial anthelmintics for controlling H. contortus in pastured sheep and goats. This dissertation has three major aims conducted in three separate studies: the first in vivo one was to evaluate the extended effect of a springtime, combined-treatment with 3 anthelmintics having …


The Effect Of Proteolytic Queues On Antibiotic Tolerance And Persistence Cells Population In Escherichia Coli, Alawiah Abualrahi Jan 2019

The Effect Of Proteolytic Queues On Antibiotic Tolerance And Persistence Cells Population In Escherichia Coli, Alawiah Abualrahi

Electronic Theses and Dissertations

A major contributing factor to the abundance of antibiotic-resistant microorganisms and failed antibiotic treatment is survival due to antibiotic tolerance and persistence. Antibiotic tolerance is a widespread phenomenon that enables cells to survive treatment without carrying a resistance gene. This phenomenon renders antibiotic treatments less effective and facilitates antibiotic resistance. We are particularly interested in proteases, responsible for degradation of proteins, because of their known relationship to tolerance and persistence. Here, we examine the effects of proteases and antibiotic survival using queueing theory, in which one type of customer competes for processing by servers, that has traditionally been applied to …


Improvement Of Dried Distillers’ Grains With Solubles Utilizing Pretreatments And Fungal Fermentation, Burgandy Zschetzsche Jan 2019

Improvement Of Dried Distillers’ Grains With Solubles Utilizing Pretreatments And Fungal Fermentation, Burgandy Zschetzsche

Electronic Theses and Dissertations

Limited inclusion of distillers’ grains in animal feed is primarily due to low protein and high fiber content. Other elements, such as phytate phosphorus levels in DDGS are still an issue for monogastric animals such as swine, poultry, and fish. Furthermore, unabsorbed phytic acid in manure poses a high risk for environmental pollution, because bacteria can hydrolyze phytic acid into free phosphorus that can result in algal blooms and eutrophication of surface or ground water. The objective of this thesis was to improve the nutritional value of corn dried distillers’ grains with solubles (DDGS). This was done utilizing submerged fungal …


The Tortoise (Wildfire) And The Hare (Heavy Winter Grazing) For Promoting Heterogeneity And Improving Ecosystem Services, Lucas W. Zilverberg Jan 2019

The Tortoise (Wildfire) And The Hare (Heavy Winter Grazing) For Promoting Heterogeneity And Improving Ecosystem Services, Lucas W. Zilverberg

Electronic Theses and Dissertations

The Northern Great Plains (NGP) mixed-grass prairie developed under fire, grazing, and periodic droughts, which created a heterogeneous landscape. Since European settlement, heterogeneous landscapes have declined due to fire suppression and the maximization of livestock production, leading to the need for an alternative management practice. Our overall project objective was to determine if heavy winter grazing could be used as an alternative to patch-burn grazing for promoting heterogeneity and improving ecosystem services in the NGP. Fire has been used very effectively in patch-burn grazing management to create heterogeneity in pastures in some areas, however burning is not readily adopted in …


Brassica Carinata Growth And Yield Response To Nitrogen And Sulfur Fertilizers And Impacts On Selected Soil Parameters And Ghg Fluxes, Dwarika Bhattarai Jan 2019

Brassica Carinata Growth And Yield Response To Nitrogen And Sulfur Fertilizers And Impacts On Selected Soil Parameters And Ghg Fluxes, Dwarika Bhattarai

Electronic Theses and Dissertations

Carinata (Brassica carinata A. Braun), a non-food oilseed crop and an alternative bio-jet fuel feedstock, has received attention for its potential as a low-input option for production in the semi-arid regions of the Northern Great Plains of USA. The crop has a lower N fertilizer requirement as compared to the other oilseeds, suggesting less negative impact on soils and GHGs emissions. Carinata is a new crop to South Dakota (SD), thus, the best management practices have yet to be developed. In addition, no sufficient research to address the impact of growing carinata on soils and GHG emissions has been …


Relationship Of Weight-Related Eating Behaviors And Weight-Loss Of Participants In A Proprietary Weight-Loss Program, Megan Tschakert Jan 2019

Relationship Of Weight-Related Eating Behaviors And Weight-Loss Of Participants In A Proprietary Weight-Loss Program, Megan Tschakert

Electronic Theses and Dissertations

The aim of this study is to evaluate weight-related eating behaviors of participants with clinically significant weight loss (CSWL) in a proprietary weight loss program. A crosssectional sample of participants (n=1,454) enrolled in a proprietary weight-loss program that includes meal replacements and health coaching were queried for weight-related eating behaviors (using Weight Related Eating Questionnaire) of routine restraint (RR), compensatory restraint (CR), susceptibility to external cues (SEC), and emotional eating (EE) in relation to CSWL (defined as having achieved a weight loss greater than 10% of starting weight). Participants were dichotomized into those with CSWL (n=973) and with no CSWL …


Eat Smart, Play Hard The Oyate Way: Impact Of A Culturally Tailored Nutrition And Physical Activity Curriculum On Elementary Youth, Abbey Hillestad Jan 2019

Eat Smart, Play Hard The Oyate Way: Impact Of A Culturally Tailored Nutrition And Physical Activity Curriculum On Elementary Youth, Abbey Hillestad

Electronic Theses and Dissertations

Objective: To assess changes in nutrition and physical activity (PA) knowledge and behavior in elementary-age participants from school districts with high American Indian enrollment after completion of a culturally tailored education curriculum.
Design: Pre-post intervention study assessing knowledge and behavior using quantitative methods. Participants: A total of 248 participants (Kindergarten through 5th grade, n=248) throughout 13 elementary classrooms in tribal communities participated in Eat Smart. Play Hard.: The Oyate Way. Intervention(s): Baseline and post intervention data from a culturally tailored nutrition and PA knowledge and behavior curriculum.
Main Outcome Measure(s): Dependent variables were nutrition and PA knowledge, and nutrition and …


Development Of Enhanced Weed Detection System With Adaptive Thresholding, K-Means And Support Vector Machine, Dheeman Saha Jan 2019

Development Of Enhanced Weed Detection System With Adaptive Thresholding, K-Means And Support Vector Machine, Dheeman Saha

Electronic Theses and Dissertations

This paper proposes a sophisticated classification process to segment the leaves of carrots from weeds (mostly Chamomile). In the early stages, of the plants’ development, both weeds and carrot leaves are intermixed with each other and have similar color texture. This makes it difficult to identify without the help of the domain experts. Therefore, it is essential to remove the weed regions so that the carrot plants can grow without any interruptions. The process of identifying the weeds become more challenging when both plant and weed regions overlap (inter-leaves). The proposed system addresses this problem by creating a sophisticated means …


The Economic And Social Values Associated With Small South Dakota Lakes, Aaron Patrick Sundmark Jan 2019

The Economic And Social Values Associated With Small South Dakota Lakes, Aaron Patrick Sundmark

Electronic Theses and Dissertations

The valuation of small fishing lakes is a vital component in understanding the importance of fishing and of recreational resources, in general. Knowing the values associated with such lakes is essential when prioritizing management activities. The overall value of a lake as a resource for human benefit is estimated as the summation of both instrumental and non-instrumental values. Instrumental values consist of economic and utilitarian values, as well as the values that a lake provides from ecosystem services. Non-instrumental values consider what the lake is worth as a good of its own, such as aesthetic, moral, and spiritual values gained …


Shrimp Production Environment And The Gut Microbiome: Effects Of Aquaculture Practices And Selective Breeding On The Gut Microbiome Of Pacific Whiteleg Shrimp, Litopenaeus Vannamei, Angela Landsman Jan 2019

Shrimp Production Environment And The Gut Microbiome: Effects Of Aquaculture Practices And Selective Breeding On The Gut Microbiome Of Pacific Whiteleg Shrimp, Litopenaeus Vannamei, Angela Landsman

Electronic Theses and Dissertations

Knowledge of the functional role of the gut microbiome in animal health and nutrition may provide solutions to shrimp aquaculture challenges, such as improving disease resistance and optimizing growth particularly with low cost feeds. Successful manipulation of bacteria found in the gut requires a deeper understanding of shrimp microbial communities and how their compositional structure is influenced by environmental conditions, and inherent host factors such as genetics. The initial research investigated the intestinal bacterial communities of the Pacific whiteleg shrimp (Litopenaeus vannamei) reared in pond systems compared to indoor aquaculture facilities as an exploration of the effects of aquaculture practices …


Increasing Accumulation Of Glyceollins In Soybeans Via Optimization Of The Fungal Incubation Process, Stephanie Wootton Jan 2019

Increasing Accumulation Of Glyceollins In Soybeans Via Optimization Of The Fungal Incubation Process, Stephanie Wootton

Electronic Theses and Dissertations

Continual use of antibiotics in the feed of food animals was viewed a solution to the problem of disease outbreaks in livestock produced in confinement operations. This practice also improved animal performance, likely due to the reduction in sub-clinical infections. Unfortunately, this practice led to a new problem, the development of antibiotic resistant microbes. This increase in antibiotic resistance reduced the direct benefits of antibiotics in animal production. Moreover, as antibiotic resistance spread from animal to human pathogens, this practice created a major public health concern. This led the FDA to enact the Veterinary Feed Directive in 2017 that greatly …


Evaluation Of Feeding Alternative Feedstuffs Including Hydroponic Barley Sprouts And Carinata Meal To Dairy Cattle, Rhea D. Lawrence Jan 2019

Evaluation Of Feeding Alternative Feedstuffs Including Hydroponic Barley Sprouts And Carinata Meal To Dairy Cattle, Rhea D. Lawrence

Electronic Theses and Dissertations

The purpose of this dissertation research was to examine alternative feed ingredients not typically found in dairy cattle diets. In total, four studies were conducted to evaluate feedstuffs such as hydroponic barley sprouts and carinata meal and how they affect cattle performance. To determine how feeding hydroponic barley sprouts would affect growing dairy heifer and lactating cow performance two feeding studies were conducted. In the first study, inclusion of 14 % (DM basis) hydroponic barley sprouts (HYD) was evaluated in an ad libitum total mixed ration (TMR) compared to a control (CON) diet on dairy heifer performance during a 12 …


Characterizing Spatiotemporal Patterns Of White Mold In Soybean Across South Dakota Using Remote Sensing, Confiance L. Mfuka Jan 2019

Characterizing Spatiotemporal Patterns Of White Mold In Soybean Across South Dakota Using Remote Sensing, Confiance L. Mfuka

Electronic Theses and Dissertations

Soybean is among the most important crops, cultivated primarily for beans, which are used for food, feed, and biofuel. According to FAO, the United States was the biggest soybeans producer in 2016. The main soybean producing regions in the United States are the Corn Belt and the lower Mississippi Valley. Despite its importance, soybean production is reduced by several diseases, among which Sclerotinia stem rot, also known as white mold, a fungal disease that is caused by the fungus Sclerotinia sclerotiorum is among the top 10 soybean diseases. The disease may attack several plants and considerably reduce yield. According to …


Preservice Agricultural Education Majors’ Perceptions Of Integrating Science Into Agriculture, Kasey Trocke Jan 2019

Preservice Agricultural Education Majors’ Perceptions Of Integrating Science Into Agriculture, Kasey Trocke

Electronic Theses and Dissertations

Agricultural science has seen a rise in secondary agricultural classrooms and many studies have been done with regards to integrating science into agriculture. Several recommendations have been to assist preservice agriculture education majors with science integration. Preservice agricultural education majors could influence the future of agricultural science due to their perceptions of integrating science into agriculture into the classroom. The purpose of the study was to assess preservice teachers’ perceptions of integrating science into agriculture curriculum based on the theory of planned behavior. An online survey was administered to the population of agricultural education majors at South Dakota State University. …


Greater Sage-Grouse Survival, Breeding Ecology, Resource Selection, And West Nile Virus Prevalence On The Eastern Fringe Of Their Range, Lindsey Anne Parsons Jan 2019

Greater Sage-Grouse Survival, Breeding Ecology, Resource Selection, And West Nile Virus Prevalence On The Eastern Fringe Of Their Range, Lindsey Anne Parsons

Electronic Theses and Dissertations

The greater sage-grouse (Centrocercus urophasianus) is a sagebrush (Artemisia spp.) obligate species that has experienced population declines over the past several decades. Sage-grouse are a species of conservation concern throughout the Intermountain West and are considered a species of greatest conservation need in South Dakota. Numerous studies have documented drivers of demographic performance at the core of their distribution; however, relatively few studies have examined sage-grouse inhabiting the eastern extent of their range, in South Dakota. We sought to examine sage-grouse space use in multiple seasons, estimate survival, and determine factors affecting nest success in South Dakota …


The Influence Of Preovulatory Estradiol On Uterine Transcriptomics And Proteomics Around Maternal Recognition Of Pregnancy In Beef Cattle, Emmalee J. Northrop Jan 2019

The Influence Of Preovulatory Estradiol On Uterine Transcriptomics And Proteomics Around Maternal Recognition Of Pregnancy In Beef Cattle, Emmalee J. Northrop

Electronic Theses and Dissertations

Preovulatory estradiol has been reported to play a crucial role in pregnancy establishment and maintenance, but the mechanism by which estradiol exerts its effects has not been well characterized. Specifically, the interactions between the maternal uterine environment and the developing conceptus can greatly impact pregnancy success or loss. The objective of this dissertation is to determine the effects of preovulatory estradiol exposure on uterine and trophectoderm transcriptomes, and uterine luminal fluid (ULF) protein composition. Beef cows/heifers were synchronized, artificially inseminated (d 0), and grouped into either high (highE2) or low (lowE2) preovulatory estradiol. Uteri were flushed to collect d16 conceptuses …


Performance Differences Between Two Groups Of Commercial Pigs Following Experimental Infection With Prrs Virus 1-7-4, Erin Little Jan 2019

Performance Differences Between Two Groups Of Commercial Pigs Following Experimental Infection With Prrs Virus 1-7-4, Erin Little

Electronic Theses and Dissertations

Porcine reproductive and respiratory syndrome virus (PRRSV) is the costliest swine disease in North America. Vaccines and management alone have not been effective in controlling this disease. Genetic selection for resilience may be a complimentary approach for controlling PRRSV. The objective of this study was to estimate performance differences between two groups of pigs from the same commercial line following infection with PRRSV 1-7-4: 1) pigs sired by boars selected based on a standard index (TN-S), which emphasized feed efficiency and carcass quality; and 2) pigs sired by boars selected based on an experimental index (TN-E), which emphasized feed intake, …


Augmenting Land Cover/Land Use Classification By Incorporating Information From Land Surface Phenology: An Application To Quantify Recent Cropland Expansion In South Dakota, Lan Hoang Nguyen Jan 2019

Augmenting Land Cover/Land Use Classification By Incorporating Information From Land Surface Phenology: An Application To Quantify Recent Cropland Expansion In South Dakota, Lan Hoang Nguyen

Electronic Theses and Dissertations

Understanding rapid land change in the U.S. NGP region is not only critical for management and conservation of prairie habitats and ecosystem services, but also for projecting production of crops and biofuels and the impacts of land conversion on water quality and rural transportation infrastructure. Hence, it raises the need for an LCLU dataset with good spatiotemporal coverage as well as consistent accuracy through time to enable change analysis. This dissertation aims (1) to develop a novel classification method, which utilizes time series images from comparable sensors, from the perspective of land surface phenology, and (2) to apply the land …


Physical Activity Environments In Rural Communities: Exploring The Relationship Between Community Perceptions And The Environment, Elizabeth M. Bye Jan 2019

Physical Activity Environments In Rural Communities: Exploring The Relationship Between Community Perceptions And The Environment, Elizabeth M. Bye

Electronic Theses and Dissertations

Purpose: To assess the physical activity environment, community perceptions of the physical activity environment, and the relationship between these variables in rural and/or underserved communities with high obesity prevalence.
Methods: The Rural Active Living Assessment (RALA) was used to assess the programs and policies (PPA), town-wide amenities (TWA), and street segments (SSA) of the physical activity environment and the Rural Active Living Perceived Environmental Support Scale (RALPESS) was used to assess community perception of the physical activity environment within eleven rural and/or underserved communities. Each section of the RALA and RALPESS are further broken down into additional subsections in order …


Interactions Of Arbuscular Mychorrhizal Fungi And Bacterial Endophytes On Disease Resistance Of Common Root Pathogens In Wheat, Janice L. Eibensteiner Jan 2019

Interactions Of Arbuscular Mychorrhizal Fungi And Bacterial Endophytes On Disease Resistance Of Common Root Pathogens In Wheat, Janice L. Eibensteiner

Electronic Theses and Dissertations

Arbuscular mycorrhiza, a symbiosis between plants and fungi, help plants to capture nutrients such as phosphorus (P), nitrogen (N) and other micronutrients from the aggre in exchange for up to 20% of the fixed carbon (C) from the plant. In addition, arbuscular mycorrhizal (AM) fungi can improve the resistance against abiotic (drought, salinity), and also biotic (pathogen) stresses. Bacterial endophytes promote plant growth and yield by fixing N2 from the atmosphere, assimilating N and transfer it to the plant. Bacterial endophytes can also solubilize phosphate and stimulate plant defense responses, suppressing pathogens. The host plant provides sucrose and a favorable …


Identifying An Optimal Bald Eagle Monitoring Program For Southwest Alaska National Parks, Rebecca Kolstrom Jan 2019

Identifying An Optimal Bald Eagle Monitoring Program For Southwest Alaska National Parks, Rebecca Kolstrom

Electronic Theses and Dissertations

The Southwest Alaska Inventory and Monitoring Network includes bald eagle monitoring as part of their Vital Signs Monitoring Plan. Lake Clark National Park and Preserve, Katmai National Park and Preserve, Kenai Fjords National Park, and Wrangell – St. Elias National Park and Preserve monitor bald eagles annually, albeit slightly differently among parks. Since monitoring decisions involve multiple objectives and stakeholders, there was a need for a structured approach to identify an optimal monitoring program. We used a structured decision making process and an iterative, four-round Delphi Process to collect information about long-term bald eagle monitoring from experts. We collected information …


Estimating Soil Organic Carbon In Cultivated Soils Using Soil Test Data, Remote Sensing Imagery From Satellites (Landsat 8 And Plantscope), And Web Soil Survey Data, Muhammed Halil Koparan Jan 2019

Estimating Soil Organic Carbon In Cultivated Soils Using Soil Test Data, Remote Sensing Imagery From Satellites (Landsat 8 And Plantscope), And Web Soil Survey Data, Muhammed Halil Koparan

Electronic Theses and Dissertations

Soil organic carbon (SOC) is an important soil parameter of cultivated soils that needs to be monitored and mapped regularly to enhance soil health and productivity. SOC levels in cultivated areas is difficult to monitor for farmers and is costly to analyze using traditional methods. The objective of this study was to estimate surface SOC distribution in selected soils of Major Land Resource Areas (MLRA) 102A (Rolling Till Plain, Brookings County, SD) and 103 (Central Iowa and Minnesota Till Prairies, Lac qui Parle County, MN) using soil sample data, Web Soil Survey (WSS) data, and satellite imagery (Landsat 8 and …


Identification And Characterization Of Stress Responsive Genes In Soybean And Sunflower, Surendra Neupane Jan 2019

Identification And Characterization Of Stress Responsive Genes In Soybean And Sunflower, Surendra Neupane

Electronic Theses and Dissertations

Stress responsive genes encode proteins involved in plants’ response to abiotic and biotic stresses. Among such stress responsive proteins, proteins encoded by resistance genes (R genes) or nucleotide binding site-leucine-rich repeats (NBS-LRRs) and mitogen-activated protein kinases (MAPKs) are the major groups of proteins regulating biotic and abiotic stresses, respectively. Previous studies in Nepal’s lab at SDSU identified and characterized coiled coil (CC)-NBS-LRRs (CNLs), resistance to powdery mildew8 (RPW8)-NBS-LRRs (RNLs), NBS-LRR (NLs), and MAPK proteins in soybean. This study focuses on R and MAPK genes in the recently sequenced genome of sunflower as well as the toll-interleukin-1 receptor-like nucleotide-binding site leucine-rich …


Development And Evaluation Of Vaccine Candidates For Senecavirus A, Bishwas Sharma Jan 2019

Development And Evaluation Of Vaccine Candidates For Senecavirus A, Bishwas Sharma

Electronic Theses and Dissertations

Senecavirus A (SVA) has been associated with several outbreaks of vesicular disease (VD) since 2014 in major swine-producing countries around the world. The virus causes VD that is clinically indistinguishable from foot-and-mouth disease (FMD) in pigs. Currently there are no commercial vaccines available for SVA. Here, we developed a live attenuated SVA strain by mutating a wild type SVA strain SD15-26 (wt SVA). The live attenuated virus, rSVA mSacII, replicated less efficiently in cell cultures in vitro and expressed lower amounts of VP1 and VP2 capsid proteins than wt SVA. Most importantly, the rSVA mSacII virus failed to induce clinical …


Investigation Of Intergroup Bias In Two Neuromaturationally Distinct Age Cohorts: An Erp Study, Reuven M. Hanna Jan 2019

Investigation Of Intergroup Bias In Two Neuromaturationally Distinct Age Cohorts: An Erp Study, Reuven M. Hanna

Electronic Theses and Dissertations

Currently, sociological investigation of adolescent behavior focuses on the intersection of biography, history, and structure to explain adolescent risk-taking, reward-seeking, impulsivity, novelty-seeking and peer-salience. However, the preponderance of the evidence points away from social ecology and to a significant neuromaturational restructuring event between the 12th and 25th years of life as the root of adolescent behavioral tendencies. As a result, sociological social psychology can benefit from engaging in basic research using neuroscience methods. The present study expands the dual systems model of brain development to account for maturational changes in the social brain network as a way to explain social …


Development And Characterization Of Wheat-Thinopyrum Junceiforme Chromosome Addition Lines, Dilkaran Singh Jan 2019

Development And Characterization Of Wheat-Thinopyrum Junceiforme Chromosome Addition Lines, Dilkaran Singh

Electronic Theses and Dissertations

Production of wheat is challenged by dynamic biotic and abiotic stresses. Genetic improvement via alien gene transfer is an effective approach to tackle such challenges. Alien gene transfer played an important role in the history of wheat crop improvement. Sea wheatgrass (SWG; Thinopyrum junceiforme, 2n = 28, genomes J1J1J2J2) is a wild relative of wheat. In our previous work, we have developed a complete amphiploid between cultivated emmer and SWG and shown that SWG is resistant to wheat streak mosaic virus, Fusarium head blight and wheat stem sawflies (due to the solid stem) and tolerant to waterlogging, salinity, heat, and …


Assessing Freshwater Mussel (Bivalvia: Unionidae) Assemblages And Effects Of Eutrophication On Pyganodon Grandis In Lakes Of Eastern South Dakota, Katherine M. Wollman Jan 2019

Assessing Freshwater Mussel (Bivalvia: Unionidae) Assemblages And Effects Of Eutrophication On Pyganodon Grandis In Lakes Of Eastern South Dakota, Katherine M. Wollman

Electronic Theses and Dissertations

Globally, the family Unionidae is the most threatened group of freshwater fauna. South Dakota is well known for its agricultural production, leading to cultural eutrophication from enhanced fertilizers and sediments. This impact can alter species presence, age, growth and mortality. Objectives of this study were to 1) implement the first comprehensive lake survey of freshwater mussels in eastern South Dakota lakes and document distribution, occurrence and relative abundance, 2) evaluate relationships between age, growth and mortality of Pyganodon grandis and lake trophic state. Freshwater mussels were sampled in 2017 from 116 proportionally and randomly selected natural lakes and reservoir basins …


Efficacy Of Synthetic And Biopesticides On Bacteria Leaf Streak Management And Influence Of Cultivar And Environment On Epiphytic Bacteria Diversity On Wheat Seeds, Marilen Nampijja Jan 2019

Efficacy Of Synthetic And Biopesticides On Bacteria Leaf Streak Management And Influence Of Cultivar And Environment On Epiphytic Bacteria Diversity On Wheat Seeds, Marilen Nampijja

Electronic Theses and Dissertations

Wheat (Triticum aestivum) is the most important staple food for over two billion people, or 36% of the world population. The United States ranks 4th in the world for wheat production. However, wheat production is faced by both biological and non-biological constraints. Among the biological constraints, diseases play a big role in limiting wheat production with estimated yield losses ranging from 20% to 40%. Bacterial leaf streak (BLS) of wheat caused by Xanthomonas translucens pv undulosa (Xtpvu) is one of the major bacterial diseases affecting the wheat production in most wheat growing regions in the USA. In recent years, it …


Development Of Computational Techniques For Identification Of Regulatory Dna Motif, Cankun Wang Jan 2019

Development Of Computational Techniques For Identification Of Regulatory Dna Motif, Cankun Wang

Electronic Theses and Dissertations

Identifying precise transcription factor binding sites (TFBS) or regulatory DNA motif (motif) plays a fundamental role in researching transcriptional regulatory mechanism in cells and helping construct regulatory networks for biological investigation. Chromatin immunoprecipitation combined with sequencing (ChIP-seq) and lambda exonuclease digestion followed by high-throughput sequencing (ChIP-exo) enables researchers to identify TFBS on a genome-scale with improved resolution. Several algorithms have been developed to perform motif identification, employing widely different methods and often giving divergent results. In addition, these existing methods still suffer from prediction accuracy. Thesis focuses on the development of improved regulatory DNA motif identification techniques. We designed an …


Effects Of Increasing Dietary Levels Of Carinata Meal On Feeding Behavior, Performance And Carcass Characteristics Of Beef Growing Steers, Alejandro C. Casella Jan 2019

Effects Of Increasing Dietary Levels Of Carinata Meal On Feeding Behavior, Performance And Carcass Characteristics Of Beef Growing Steers, Alejandro C. Casella

Electronic Theses and Dissertations

The objectives of the present study are to evaluate feeding behavior, animal performance and carcass characteristics of beef growing steers fed increasing amounts of carinata meal (CM). Due to the high protein content of the CM after the oil extraction for biofuel there is an opportunity to use it as a protein supplementation in beef cattle. Twenty-four steers blocked by weight were assigned to four corn-based diets (n = 6 animals per treatment). In the three treatment diets, carinata meal replaced high-moisture corn at 5, 10, or 15%. The diets were fed using the Insentec RIC system for 138 days. …