Life Sciences Commons^™

Increases In Vein Length Compensate For Leaf Area Lost To Lobing In Grapevine, Zoë Migicovsky, Joel F. Swift, Zachary Helget, Laura L. Klein, Anh Ly, Matthew Maimaitiyiming, Karoline Woodhouse, Anne Fennell, Misha Kwasniewski, Allison J. Miller, Peter Cousins, Daniel H. Chitwood

Agronomy, Horticulture and Plant Science Faculty Publications

Premise:Leaf lobing and leaf size vary considerably across and within species,including among grapevines (Vitisspp.), some of the best‐studied leaves. Weexamined the relationship between leaf lobing and leaf area across grapevinepopulations that varied in extent of leaf lobing.
Methods:We used homologous landmarking techniques to measure 2632 leavesacross 2 years in 476 unique, genetically distinct grapevines fromfive biparentalcrosses that vary primarily in the extent of lobing. We determined to what extent leafarea explained variation in lobing, vein length, and vein to blade ratio.
Results:Although lobing was the primary source of variation in shape across theleaves we measured, leaf area varied only slightly …

Multi-Dimensional Leaf Phenotypes Reflect Root System Genotype In Grafted Grapevine Over The Growing Season, Zachery N. Harris, Mani Awale, Niyati Bhaakta, Daniel H. Chitwood, Anne Fennell, Emma Frawley, Laura L. Klein, Laszlo G. Kovacs, Misha Kwasniewski, Jason P. Londo, Qin Ma, The Ohio State University Miogicovsky, Joel F. Swift, Allison J. Miller

Agronomy, Horticulture and Plant Science Faculty Publications

Modern biological approaches generate volumes of multi-dimensional data, offering unprecedented opportunities to address biological questions previously beyond reach owing to small or subtle effects. A fundamental question in plant biology is the extent to which below-ground activity in the root system influences above-ground phenotypes expressed in the shoot system. Grafting, an ancient horticultural practice that fuses the root system of one individual (the rootstock) with the shoot system of a second, genetically distinct individual (the scion), is a powerful experimental system to understand below-ground effects on above-ground phenotypes. Previous studies on grafted grapevines have detected rootstock influence on scion phenotypes …

Abrasive Weeding As A Vehicle For Precision Fertilizer Management In Organic Vegetable Production, Tran Kim Ngan Luong, Frank Forcella, Sharon A. Clay, Michael S. Douglass, Sam E. Wortman

Agronomy, Horticulture and Plant Science Faculty Publications

Abrasive weeding is a nonchemical weed control tactic that uses small, gritty materials propelled with compressed air to destroy weed seedlings. Organic fertilizers have been used successfully as abrasive grits to control weeds, but the goal for this study was to explore the effects of fertilizer grit, application rates, and background soil fertility on weeds, plant available nitrogen (N) uptake, and crop yield. Field trials were conducted in organic ‘Carmen’ sweet red pepper (Capsicum annuum) and organic ‘Gypsy’ broccoli (Brassica oleracea var. italica) and treatments included organic fertilizer grit (8N–0.9P–3.3K vs. 3N–3.1P–3.3K), grit application rates (low …

Cold Climate Grape Cultivar`S Physiological And Gene Expression Responses To Low And Freezing Temperatures, Turhan Yilmaz

Electronic Theses and Dissertations

Grapevine (Vitis Vinifera), widely cultivated in the world and USA, is a significant and valuable fruit crop. After cold climate grapevine cultivars were released by breeding programs in the 1990s, the production of grapes expanded in the Northern cold climate region of the US. The objectives of this study were to test 1) freezing tolerance and chilling fulfillment, 2) the effect of pruning methods on yield and winter survival, and 3) transcriptomic changes in natural and controlled chilling conditions during chilling requirement fulfillment in cold climate grapevine cultivars. Pruning methods, spur (SP), short cane (SC), and spur plus short cane …

Exploring Phenotypic Diversity And Quantitative Trait Loci Mapping For Root Architecture, Freezing Tolerance, Chilling Fulfillment, And Photoperiod Traits In Grapevine Populations, Dilmini Alahakoon

Electronic Theses and Dissertations

Grapevine (Vitis species) is one of the most valuable fruit crops widely cultivated throughout the United States of America (USA). Grape and wine industries in the northern USA have been expanding rapidly with the demand for quality wine grapes that can be grown in Northern cold climate regions. As most popular cultivars are freezing sensitive, the development of new cultivars for the region continues through breeding. In this study, we evaluated grapevine root system architecture, freezing tolerance, and bud break in different genetic backgrounds in natural or controlled environments. The dissertation research objectives were to explore trait phenotypic variation and …

Genetic Analysis Of Stilbenoid Profiles In Grapevine Stems Reveals A Major Mqtl Hotspot On Chromosome 18 Associated With Disease-Resistance Motifs, Soon L. Teh, Bety Rostandy, Mani Awale, James J. Luby, Anne Fennell, Adrian D. Hegeman

Agronomy, Horticulture and Plant Science Faculty Publications

Grapevine (Vitis spp.) contains a wealth of phytochemicals that have received considerable attention due to health-promoting properties and biological activities as phytoalexins. To date, the genetic basis of the quantitative variations for these potentially beneficial compounds has been limited. Here, metabolic quantitative trait locus (mQTL) mapping was conducted using grapevine stems of a segregating F₂ population. Metabolic profiling of grapevine stems was performed using liquid chromatography–high-resolution mass spectrometry (LC-HRMS), resulting in the detection of 1317 ions/features. In total, 19 of these features matched with literature-reported stilbenoid masses and were genetically mapped using a 1449-SNP linkage map and R/qtl …

Effects Of Harvest Time On The Aroma Of White Wines Made From Cold-Hardy Brianna And Frontenac Gris Grapes Using Headspace Solid-Phase Microextraction And Gas Chromatography-Mass Spectrometry-Olfactometry, Somchai Rice, Madina Tursumbayeva, Matthew Clark, David Greenlee, Murlidhar Dharmadhikari, Anne Fennell Dr, Jacek A. Koziel

Agronomy, Horticulture and Plant Science Faculty Publications

The Midwest wine industry has shown a marked increase in growers, hectares planted, wineries, and wine production. This growth coincides with the release of cold-hardy cultivars such as Brianna and Frontenac gris, in 2001 and 2003, respectively. These white grape varieties account for one-third of the total area grown in the state of Iowa. It is generally accepted that the wine aroma profile plays a crucial role in developing a local, sustainable brand. However, the identity of Brianna/Frontenac Gris-based wine aromas and their link to the grape berry chemistry at harvest is unknown. This study aims to preliminarily characterize key …

Evaluation Of Tannins And Anthocyanins In Marquette, Frontenac, And St. Croix Cold-Hardy Grape Cultivars, Somchai Rice, Jacek A. Koziel, Murlidhar Dharmadhikari, Anne Fennell

Agronomy, Horticulture and Plant Science Faculty Publications

Cold-hardy grape cultivars have become popular in northern regions. Wines from these cultivars are low in tannins and lighter in color compared to Vitis vinifera. The northern regions are striving to enhance desired ″full body″ and red color qualities in the wine produced from cold-hardy grapes. The objective of this study was to compare tannin and pigment content in skins and seeds of three cold-hardy red grape cultivars, at two time points, from two locations, using the Adams-Harbertson (A-H) assay. The A-H assay is based on protein precipitation and spectrophotometry. Total tannin concentrations detected in Frontenac, Marquette, and St. Croix …

Comparison Of Three Assembly Strategies For A Heterozygous Seedless Grapevine Genome Assembly, Sagar Patal, Zhixiu Lu, Xiaozhu Jin, Padmapriya Swaminathan, Erliang Zeng, Anne Y. Fennell Dr

Agronomy, Horticulture and Plant Science Faculty Publications

Background
De novo heterozygous assembly is an ongoing challenge requiring improved assembly approaches. In this study, three strategies were used to develop de novo Vitis vinifera ‘Sultanina’ genome assemblies for comparison with the inbred V. vinifera (PN40024 12X.v2) reference genome and a published Sultanina ALLPATHS-LG assembly (AP). The strategies were: 1) a default PLATANUS assembly (PLAT_d) for direct comparison with AP assembly, 2) an iterative merging strategy using METASSEMBLER to combine PLAT_d and AP assemblies (MERGE) and 3) PLATANUS parameter modifications plus GapCloser (PLAT*_GC).
Results
The three new assemblies were greater in size than the AP assembly. PLAT*_GC had the …

Determination Of Selected Aromas In Marquette And Frontenac Wine Using Headspace-Spme Coupled With Gc-Ms And Simultaneous Olfactometry, Somchai Rice, Nanticha Lutt, Jacek A. Koziel, Murlidhar Dharmadhikari, Anne Fennell Dr

Agronomy, Horticulture and Plant Science Faculty Publications

Understanding the aroma profile of wines made from cold climate grapes is needed to help winemakers produce quality aromatic wines. The current study aimed to add to the very limited knowledge of aroma-imparting compounds in wines made from the lesser-known Frontenac and Marquette cultivars. Headspace solid-phase microextraction (SPME) and gas chromatography-mass spectrometry (GC-MS) with simultaneous olfactometry was used to identify and quantify selected, aroma-imparting volatile organic compounds (VOC) in wines made from grapes harvested at two sugar levels (22° Brix and 24° Brix). Aroma-imparting compounds were determined by aroma dilution analysis (ADA). Odor activity values (OAV) were also used to …

Perimeter Cropping As A Means Of Reducing Insect Injury And Increasing Crop Yield, Brett L. Owens

Electronic Theses and Dissertations

The squash vine borer, Melittia cucurbitae Harris, (Lepidoptera: Sesiidae) is a destructive insect known to injure a broad range of cucurbit crops. Many studies have focused on insecticide management of this insect in squash (Cucurbita) and pumpkin (Cucurbita pepo Linnaeus) production; however, little work has been documented on organic approaches to reduce or eliminate injury from this pest to these crops in the Midwest. This study used trap cropping and pollinator mixtures to test whether a reduction of squash vine borer could be achieved in a specific cultivar of pumpkins, Cucurbita pepo ‘Howden’. The study was …

A Survey Of Non-Crop Plants As Alternative Hosts To Raspberries For Drosophila Suzukii (Spotted Wing Drosophila), Bennur Agbaba

Electronic Theses and Dissertations

The spotted wing fruit fly (SWD), Drosophila suzukii (Matsumura) (Diptera: Drosophilidae), is a pest of small fruit crops. Unlike most other Drosophila species, this insect can oviposit into ripe fruits, rendering them unmarketable. Drosophila suzukii is spreading quickly throughout the continental United States including South Dakota, and causing serious damage to horticultural crops, particularly those within the fruit industry. This study determines the D. suzukii host plant both commercial crops and native plants, and defines non-crop host plants by season in South Dakota. Further, it confirms the occurrence of the fly in southeastern South Dakota and identifies high-risk infestation areas …

A Next-Generation Marker Genotyping Platform (Ampseq) In Heterozygous Crops: A Case Study For Marker-Assisted Selection In Grapevine, Shanshan Yang, Jonathan Fresnedo-Ramírez, Minghui Wang, Linda Cote, Peter Schweitzer, Paola Barba, Elizabeth M. Takacs, Matthew Clark, James Luby, David C. Manns, Gavin Sacks, Anna Katharine Mansfield, Jason Londo, Anne Fennell Dr, David Gadoury, Bruce Reisch, Lance Cadle-Davidson, Qi Sun

Agronomy, Horticulture and Plant Science Faculty Publications

Marker-assisted selection (MAS) is often employed in crop breeding programs to accelerate and enhance cultivar development, via selection during the juvenile phase and parental selection prior to crossing. Next-generation sequencing and its derivative technologies have been used for genome-wide molecular marker discovery. To bridge the gap between marker development and MAS implementation, this study developed a novel practical strategy with a semi-automated pipeline that incorporates traitassociated single nucleotide polymorphism marker discovery, low-cost genotyping through amplicon sequencing (AmpSeq) and decision making. The results document the development of a MAS package derived from genotyping-by-sequencing using three traits (flower sex, disease resistance and …

Toward The Elucidation Of Cytoplasmic Diversity In North American Grape Breeding Programs, Jonathan Fresnedo-Ramirez, Qi Sun, Chin-Feng Hwang, Craig A. Ledbetter, David W. Ramming, Anne Fennell, M. Andrew Walker, James J. Luby, Matthew D. Clark, Jason P. Londo, Lance Cadle-Davidson, Gan-Yuan Zhong

Agronomy, Horticulture and Plant Science Faculty Publications

Plants have an intriguing tripartite genetic system: Nuclear genome 9 Mitochondria 9 Plastids and their interactions may impact germplasm breeding. In grapevine, the study of cytoplasmic genomes has been limited, and their role with respect to grapevine germplasm diversity has yet to be elucidated. In the present study, the results of an analysis of the cytoplasmic diversity among 6073 individuals (comprising cultivars, interspecific hybrids and segregating progenies) are presented. Genotyping by sequencing (GBS) was used to elucidate plastid and mitochondrial DNA sequences, and results were analyzed using multivariate techniques. Single nucleotide polymorphism (SNP) effects were annotated in reference to plastid …

Towards An Open Grapevine Information System, A-F Adam-Blondon, M. Alaux, C. Pommier, D. Cantu, Z-M Cheng, Gr Cramer, C. Davies, S. Delrot, L. Deluc, G. Di Gaspero, J. Grimplet, A. Fennell Dr, Et. Al

Agronomy, Horticulture and Plant Science Faculty Publications

Viticulture, like other fields of agriculture, is currently facing important challenges that will be addressed only through sustained, dedicated and coordinated research. Although the methods used in biology have evolved tremendously in recent years and now involve the routine production of large data sets of varied nature, in many domains of study, including grapevine research, there is a need to improve the findability, accessibility, interoperability and reusability (FAIR-ness) of these data. Considering the heterogeneous nature of the data produced, the transnational nature of the scientific community and the experience gained elsewhere, we have formed an open working group, in the …

Mapping Of Photoperiod-Induced Growth Cessation In The Wild Grape Vitis Riparia, Amanda Garris, Lindsay Clark, Chris Owens, Steven Mckay, James Luby, Kathy Mathiason, Anne Fennell

Agronomy, Horticulture and Plant Science Faculty Publications

In grapevines (Vitis spp.), the timing of growth cessation in the fall is an important aspect of adaptation and a key objective in breeding new grape cultivars suitable for continental climates. Growth cessation is a complex biological process that is initiated by environmental cues such as daylength and temperature, as well as water and nutrient availability. The genetic control of growth cessation in grapevines was studied by mapping quantitative trait loci (QTL) in a hybrid grape population. An F2 mapping population was developed by selfing a single F1 plant derived from a cross between an accession of the North American …

Reestablishing The Juneberry On The Fort Berthold Indian Reservation: Cultural, Horticultural, And Educational Connections, Kerry E. Hartman

Electronic Theses and Dissertations

Tribal people of the Northern Great Plains have utilized plants for centuries. Amelanchier anifolia (Juneberries/Serviceberries) historically played an important part in the diet and culture of the Mandan, Hidatsa, and Arikara (MHA) Tribal Nations. Research conducted as part of this study into historical and contemporary uses of the Juneberry by MHA Tribal Members indicated extensive historical use and a high interest in Juneberry reestablishment for cultural, nutritional, and economic reasons. Previous research on Juneberries has investigated factors including state of dormancy, propagation method, transplant type, and mulch type. Another purpose of this study was to elucidate the impact of presence …

South Dakota Horticulture, November/December 1961, State Horticultural Society

North and South Dakota Horticulture

Volume 34, Number 6

U.S.D.A. and Land Grant Colleges Celebrate
Start Planning 1962 Garden
House Plant Reminders
Districts Hold Meetings
1962 Litterbug Poster Campaign Begins
Town and Country Hold First Standard Show

South Dakota Horticulture, September/October 1961, State Horticultural Society

North and South Dakota Horticulture

Volume 34, Number 5

Commercial Vegetables Hold Industry Potential
Amended Constitution
Dr. Ron Peterson Named Promotion Chairman
Centerville Garden Club Celebrates 10th Year
Rocky Mountain Meeting in Cheyenne, Wyo.
Fashions in Flower Shows
Book Reviews

South Dakota Horticulture, July/August 1961, State Horticultural Society

North and South Dakota Horticulture

Volume 34, Number 4

Growing Perennials
Financial Statement
Petal Pals Win Hilda Fox Award
Book Reviews
Mrs. Kindred Named Regional Director
Mums Unlimited

South Dakota Horticulture, May/June 1961, State Horticultural Society

North and South Dakota Horticulture

Volume 34, Number 3

It's Mighty Hard to Beat the Apple
State Conference Program
Tree Care Workshop Held in Rapid City
Flower Shows Reflect Interest
Book Review Feature
Plan to Compete for Flower Awards

South Dakota Horticulture, March/April 1961, State Horticultural Society

North and South Dakota Horticulture

Volume 34, Number 2

A Good Lawn
Plant 'Scads of Annuals'
Pruning Can Spare That Tree
PEP Spells New Project
Conservation Topics
Baltic Club Starts New Group in Chile

South Dakota Horticulture, January/February 1961, State Horticultural Society

North and South Dakota Horticulture

Volume 34, Number 1

Keep Green Association Picks Tree Farmers
International Peace Garden
Rapid City Parks Department Starts "Another First"
Litterbug Activity Should be in Full Swing
Notes About Birds
Opportunities for Junior Garden Club Members

South Dakota Horticulture, November/December 1960, State Horticultural Society

North and South Dakota Horticulture

Volume 33, Number 6

Hardiness Important in Selecting Plants
Men's Garden Club Builds Friendships
Society Submits Budget Request
Huron Entertains Rocky Mountain Region
Mrs. A.C. Bonham Honored at Huron
Program Planning Time

South Dakota Horticulture, September/October 1960, State Horticultural Society

North and South Dakota Horticulture

Volume 33, Number 5

Strawberry Production in South Daktoa
Growing Peonies
Some Way to Prepare Gourds
Sletvold Sparks Mum Crusade
Some Fun With Corn Husks
Ideas That Make Your Garden Club Click
So Your Club Needs Money

South Dakota Horticulture, July/August 1960, State Horticultural Society

North and South Dakota Horticulture

Volume 33, Number 4

1960 Robertson Award Winner
Wild Flowers of the Prairies
Fireblight Infection Extensive
Regional Meeting at Huron
John Vlasak is Poster Winner
You Can Eat Flowers Too

South Dakota Horticulture, May/June 1960, State Horticultural Society

North and South Dakota Horticulture

Volume 33, Number 3

They Planted Trees
Wild Flowers of the Prairies
Convention Program
What You Should Know About Garden Chemicals
Help us Make Our Highways More Beautiful
Share Your Garden With Shut-ins
17th SDFGC Convention Set

South Dakota Horticulture, March/April 1960, State Horticultural Society

North and South Dakota Horticulture

Volume 33, Number 2

Tree Plantin' Day
Pennington County Completes First Year
South Dakota Rose
A Gardener Looks at Alaska, Part II
National Award Applications Due May 1
Hints for Program Planners
He has a Million Dollar Personality
Planning a Flower Show

South Dakota Horticulture, January/February 1960, State Horticultural Society

North and South Dakota Horticulture

Volume 33, Number 1

The Stakes are High
1960 Arbor Day Activity
What Does 'Horticulture' Mean
A Gardener Looks at Alaska
Former South Dakotans Breeds New Penstemons
President's Notebook
Garden Club Gleanings
Elections

South Dakota Horticulture, November/December 1959, State Horticultural Society

North and South Dakota Horticulture

Volume 32, Number 6

'Hort' Flashes, Dean Martin
New Trends in American Gardening; Problems in Horticulture Reviewed
1960 Annual Convention Slated for Sioux Falls
What's a Good Tree Worth?
Horticultural Program Guide for Garden Clubs
'The Battle of the Sexes' in the Vegetable World
Concentrated Apple Juice Preferred by Consumers
Book Review, Mrs. G.M. Jorgensen
National Gardener Gives SDFGC National Publicity
Mrs. Briley Authors 2nd Children's Book
Bird Contest Creates Club Interest
President's Notebook, Mrs. Francis Bingen
Garden Therapy is Happy Project, Mrs. Lester Thoreson
Litterbug Campaign Saves Taxes; Two Poster Contests in 1960, Mrs. Alden Scott
Mrs. Bingen Dedicates …