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Fastqc Analysis & Hisat Alignments Using Cyverse (Part 2), Ray A. Enke
Fastqc Analysis & Hisat Alignments Using Cyverse (Part 2), Ray A. Enke
Ray Enke Ph.D.
Part 2 of this in class exercise uses CyVerse Discovery Environment (DE) for the following:
- view the output files of FastQC analysis
- create custom data tracks from HISAT alignment files for visualization in the UCSC Genome Browser
Creating Custom Rna-Seq Data Tracks In The Ucsc Genome Browser (Computational), Raymond A. Enke
Creating Custom Rna-Seq Data Tracks In The Ucsc Genome Browser (Computational), Raymond A. Enke
Ray Enke Ph.D.
This class tested protocol will guide students through the steps for the following activities:
- Create your own custom data tracks in the UCSC Genome Browser
- Visualize RNA-Seq TopHat alignment data as custom tracks in the UCSC Genome Browser
- Integrate RNA-Seq alignment data with other genome-wide data sets