Life Sciences Commons^™

Virulence Modulation In Photorhabdus Spp., Byron Adams

Byron Adams

Ornithine Decarboxylase Encoded By Chlorella Virus Pbcv-1, Tiara A. Morehead,, James R. Gurnon, Byron Adams, Kenneth Nickerson, Lisa A. Fitzgerald, James L. Van Etten

Byron Adams

Sequence analysis of the 330-kb genome of chlorella virus PBCV-1 revealed an open reading frame, A207R, which encodes a protein with 37–41% amino acid identity to ornithine decarboxylase (ODC) from many eukaryotic organisms. The a207r gene was cloned and the protein was expressed as a His-A207R fusion protein in Escherichia coli. The recombinant protein catalyzes pyridoxal 5’-phosphate-dependent decarboxylation of ornithine to putrescine, the first step in the polyamine biosynthetic pathway The enzyme has a pH optimum of 9.0 and a temperature optimum of 42°C, and it requires dithiothreitol for maximal activity. The enzyme has a Km, for ornithine of 0.78 …

A Phylogeny Of Belonolaimus Populations In Florida Inferred From Dna Sequences, Byron Adams, U. Gozel, K. Nguyen, R. Inserra, R. Giblin-Davis

Byron Adams

The D2-D3 and ITS regions of rDNA from 33 Florida populations of Belonolaimus spp. were sequenced and subjected to phylogenetic analysis. Our objective was to derive a theoretical evolutionary framework for interpreting phenotypic differences as they relate to the taxonomy of the genus. The most striking aspect of the phylogenetic analysis is that none of the three nominal species (B. longicaudatus, B. euthychilus, and B. gracilis) are monophyletic. Additionally, two taxa appear to have discordant ITS and LSU sequences. Three major clades of B. longicaudatus exhibited discernible, overlapping, geographic foci from east to west across the peninsula. Morphological character states …

The Instrumental Period, Robert Bindschadler, Eberhard Fahrbach, Jim Fastook, Jaume Forcarda, Josep-Maria Gili, Nancy Bertler, D M. Bergstrom, Mauro Gugliemin, Julian Gutt, Hartmut Hellmer, F Hennion, Roberto Bargagli, Carlo Barbante, Karen Heywood, Dominic Hodgson, David Holland, Sungmin Hong, Angus Atkinson, Rob Arthern, Byron Adams, A H.L Huiskes, Steve Chown, Enrique Isla, Stan Jacobs, Anna Jones, David Bromwich, Claude Boutron, Josifino Comiso, Pete Convey, Alison Cook, Guido Di Prisco, James Bockheim, Mark Stevens, Colin Summerhayes, Phil Trathan, John A. Turner, Kees Van Der Veen, David Vaughan, Mike Meredith, Paul Mayewski, Gareth Marshall, Cinzia Verde, Andrew Lenton, Howard Roscoe, Sharon A. Robinson, Steve Rintoul, Hans-Otto Portner, Sergio Rossi, Ted Scambos, Jon Shanklin, Lloyd Peck, Nicholas Metzl, Andrew Monaghan, David Webb, Christian Wiencke, Covadonga Orejas, Philip Woodworth, Tony Worby, Roger Worland, Kevin K. Newsham, Alberto Naveira-Garabato, Takashi Yamanouchi, Victor Smetacek, Kevin Speer

Byron Adams

The instrumental period began with the first voyages to the Southern Ocean during the Seventeenth and Eighteenth centuries when scientists such as Edmund Halley made observations of quantities such as geomagnetism. During the early voyages information was collected on the meteorological conditions across the Southern Ocean, ocean conditions, the sea ice extent and the terrestrial and marine biology. The continent itself was discovered in 1820, although the collection of data was sporadic through the remainder of the Nineteenth Century and it was not possible to venture into the inhospitable interior of Antarctica. At the start of the Twentieth Century stations …

Co-Variation In Soil Biodiversity And Biogeochemistry In Northern And Southern Victoria Land, Antarctica, Byron J. Adams, J. E. Barrett, Ross A. Virginia, Diana H. Wall, S. C. Cary, A. L. Hacker, J. M. Aislabie

Byron Adams

Data from six sites in Victoria Land (72-77degrees S) investigating co-variation in soil communities (microbial and invertebrate) with biogeochemical properties show the influence of soil properties on habitat suitability varied among local landscapes as well as across climate gradients. Species richness of metazoan invertebrates (Nematoda, Tardigrada and Rotifera) was similar to previous descriptions in this region, though identification of three cryptic nematode species of Eudorylaimus through DNA analysis contributed to the understanding of controls over habitat preferences for individual species. Denaturing Gradient Gel Electrophoresis profiles revealed unexpectedly high diversity of bacteria. Distribution of distinct bacterial communities was associated with specific …

A Position Paper On The Electronic Publication Of Nematode Taxonomic Manuscripts, Eyualem Abebe, James G. Baldwin, Byron Adams, Duane Hope, Scott Gardner, Robin Huettel, Peter Mullin, Thomas O. Powers, Jyotsna Sharma, Weimin Ye, William K. Thomas

Byron Adams

Several nematode species have now attained ‘model organism’ status, yet there remain many niches in basic biological inquiry for which nematodes would be ideal model systems of study. However, furthering the model system approach is hindered by lack of information on nematode biodiversity. The shortage of taxonomic resources to inventory and characterize biodiversity hinders research programs in invasion biology, ecosystem functioning, conservation biology, and many others. The disproportion between numbers of species to be described and numbers of available taxonomic specialists is greater for Nematoda than for any other metazoan phylum. A partial solution to the taxonomic impediment is the …

Transcriptomic Analysis Of The Entomopathogenic Nematode Heterorhabditis Bacteriophora Tto1, Byron Adams, Xiaodong Bai, Todd Ciche, Sandra Clifton, Randy Gaugler, Parwinder Grewal, Saskia Hogenhout, John Spieth, Paul Sternberg, Richard Wilson

Byron Adams

Background: The entomopathogenic nematode Heterorhabditis bacteriophora and its symbiotic bacterium, Photorhabdus luminescens, are important biological control agents of insect pests. This nematode-bacterium-insect association represents an emerging tripartite model for research on mutualistic and parasitic symbioses. Elucidation of mechanisms underlying these biological processes may serve as a foundation for improving the biological control potential of the nematode-bacterium complex. This large-scale expressed sequence tag (EST) analysis effort enables gene discovery and development of microsatellite markers. These ESTs will also aid in the annotation of the upcoming complete genome sequence of H. bacteriophora. Results: A total of 31,485 high quality ESTs were generated …

Decline In A Dominant Invertebrate Species Contributes To Altered Carbon Cycling In A Low-Diversity Soil Ecosystem, Byron Adams, J. Barrett, Ross Virginia, Diana Wall

Byron Adams

Low-diversity ecosystems cover large portions of the Earth's land surface, yet studies of climate change on ecosystem functioning typically focus on temperate ecosystems, where diversity is high and the effects of individual species on ecosystem functioning are difficult to determine. We show that a climate-induced decline of an invertebrate species in a low-diversity ecosystem could contribute to significant changes in carbon © cycling. Recent climate variability in the McMurdo Dry Valleys of Antarctica is associated with changes in hydrology, biological productivity, and community composition of terrestrial and aquatic ecosystems. One of the greatest changes documented in the dry valleys is …

Outcrossing And Crossbreeding Recovers Deteriorated Traits In Laboratory Cultured Steinernema Carpocapsae Nematodes, John M. Chaston, Adler R. Dillman, David I. Shapiro-Ilan, Anwar L. Bilgrami, Randy Gaugler, Keith R. Hopper, Byron J. Adams

Byron Adams

The nematode Steinernema carpocapsae infects and kills many pest insects in agro-ecosystems and is commonly used in biocontrol of these pests. Growth of the nematodes prior to distribution for biocontrol commonly results in deterioration of traits that are essential for nematode persistence in field applications. To better understand the mechanisms underlying trait deterioration of the efficacy of natural parasitism in entomopathogenic nematodes, we explored the maintenance of fitness related traits including reproductive capacity, heat tolerance, virulence to insects and ‘tail standing’ (formerly called nictation) among laboratory-cultured lines derived from natural, randomly mating populations of S. carpocapsae. Laboratory cultured nematode lines …

Desiccation Survival In An Antarctic Nematode: Molecular Analysis Using Expressed Sequenced Tags, Byron Adams, Bishwo Adhikari, Diana Wall

Byron Adams

Background: Nematodes are the dominant soil animals in Antarctic Dry Valleys and are capable of surviving desiccation and freezing in an anhydrobiotic state. Genes induced by desiccation stress have been successfully enumerated in nematodes; however we have little knowledge of gene regulation by Antarctic nematodes which can survive multiple environmental stresses. To address this problem we investigated the genetic responses of a nematode species, Plectus murrayi, that is capable of tolerating Antarctic environmental extremes, in particular desiccation and freezing. In this study, we provide the first insight into the desiccation induced transcriptome of an Antarctic nematode through cDNA library construction …

Novel Application Of Phastsystem Polyacrylamide Gel Electrophoresis Using Restriction Fragment Length Polymorphism ± Internal Transcribed Spacer Patterns Of Individuals For Molecular Identification Of Entomopathogenic Nematodes, Horolma Pamjav, Dimitra Triga, Zsuzsanna Buzµs, Tibor Vellai, Attila Lucskai, Byron Adams, Alexander P. Reid, Ann Burnell, Christine Griffin, Itamar Glazer, Michael G. Klein, Andras Fodor

Byron Adams

A relatively rapid and economic way of identifying and assigning nematodes to taxons, which had already been determined either by comparative sequence analysis of nuclear rDNA internal transcribed spacer (ITS) region or by other methods of molecular or conventional taxonomy, is provided. Molecular identification of entomopathogenic nematodes (EPN) can be upgraded by basing it on PhastSystem polyacrylamide gel electrophoresis (PAGE) analysis of restriction fragment length polymorphism (RFLP) patterns of polymerase chain reaction (PCR)-amplified DNA derived from single nematodes of Steinernema or Heterorhabditis spp. Although analysis from single worms has previously been made on agarose gel, the resolution on PhastSystem PAGE …

Susceptibility Of House Fly (Diptera: Muscidae) Larvae To Entomopathogenic Nematodes (Rhabditida: Heterorhabditidae, Steinernematidae, David B. Taylor, Allen L. Szalanski, Byron J. Adams, Richard D. Peterson Ii

Byron Adams

The potential for entomopathogenic nematodes to control flies in cattle feedlots was determined by screening 40 strains representing 8 species of Heterorhabditis Poinar and 5 species of Steinernema Travassos for virulence toward 3rd-instar house flies (maggots), Musca domestica L. None of the 22 strains of Heterorhabditis infecting maggots caused significant levels of mortality in a filter paper assay. Ten strains of Steinernema infected maggots, of which 7 strains--4 S. carpocapsa (Weiser), 2 S. feltiae (Filipjev), and 1 S. scapterisci (Nguyen & Smart) caused significant mortality. Ten Heterorhabditis strains and 10 Steinernema strains successllly reproduced for 22 generations in maggots. No …

Molecular And Morphometric Evidence For Separate Species Of Uncinaria (Nematoda: Ancylostomatidae) In California Sea Lions And Northern Fur Seals: Hypothesis Testing Supplants Verification, Steven A. Nadler, Byron J. Adams, Eugene T. Lyons, Robert L. Delong, Sharon R. Melin

Byron Adams

California sea lions (Zalophus californianus) and northern fur seals (Callorhinus ursinus) are each believed to host distinct hookworm species (Uncinaria spp.). However, a recent morphometric analysis suggested that a single species parasitizes multiple pinniped hosts, and that the observed differences are host-induced. To explore the systematics of these hookworms and test these competing hypotheses, we obtained nucleotide sequences of nuclear ribosomal DNA (D2/D3 28S, D18/D19 28S, and internal transcribed spacer [ITS] regions) from 20 individual hookworms parasitizing California sea lion and northern fur seal pups where their breeding grounds are sympatric. Five individuals from an allopatric population of California sea …

Comparative Phylogeography Of Codistributed Species Of Chilean Liolaemus (Squamata: Tropiduridae) From The Central-Southern Andean Range, Byron J. Adams, Pedro F. Victoriano, Juan Carlos Ortiz, Edgar Benavides, Jack W. Sites

Byron Adams

In this study, we used a recently developed supertrees method to test for shared phylogeographical signal in partially overlapping geographical ranges of lizards of the genus Liolaemus from the Andean Range in south-central Chile. We reconstruct mtDNA gene trees for three partially codistributed species (Liolaemus tenuis, L. lemniscatus and L. pictus), and our sampling effort is sufficient to allow statistical tests of shared signal between the combinations L. tenuis-L. pictus, and L. tenuis-L. lemniscatus. For both combinations, standardized maximum agreement subtrees scores showed statistically significant signal for shared pattern in regions of overlap, as evaluated by randomization tests (P < 0.001 and < 0.05, respectively). The matrix representation with parsimony tree obtained from the combination of the three different gene trees revealed concordant phylogeographical associations of all species, and was consistent with the geographical association of intraspecific haploclades with three Chilean bioclimatic zones. A multidimensional scaling analysis of several climate variables showed highly significant differences among these zones, which further suggests that they may have contributed to similar patterns of intraspecific divergence across all three species. In the mesomorphic zone in Central Chile, the species L. tenuis and L. lemniscatus may have codiverged in response to shared orogenic vicariant events, which likely predominated over climatic events associated with cycles of glacial advance and retreat. In the hygromorphic zone in southern Chile, however, glacial cycles likely predominated in structuring the phylogeographical histories of L. tenuis and L. pictus, although important ecological differences between these two caution against broad generalizations at this point.

Susceptibility Of House Fly (Diptera: Muscidae) Larvae To Entomopathogenic Nematodes (Rhabditida: Heterorhabditidae, Steinernematidae), David B. Taylor, Allen L. Szalanski, Byron J. Adams, Richard D. Peterson Ii

Byron Adams

The potential for entomopathogenic nematodes to control flies in cattle feedlots was determined by screening 40 strains representing 8 species of Heterorhabditis Poinar and 5 species of Steinemema Travassos for virulence toward 3rd-instar house flies (maggots), Musca domestica L. None of the 22 strains of Heterorhabditis infecting maggots caused significant levels of mortality in a filter paper assay. Ten strains of Steinemema infected maggots, of which 7 strains (4 S. carpocapsae (Weiser), 2 S.feltiae (Filipjev), and 1 S. scapterisci Nguyen & Smart) caused significant mortality. Ten Heterorhabditis strains and 10 Steinemema strains successfully reproduced for ≥ 2 generations in maggots. …

Environmental Dna Sequencing Primers For Eutardigrades And Bdelloid Rotifers, Byron Adams, Jeremy Whiting, Elizabeth Costello, Kristen Freeman, Andrew Martin, Michael Robeson, Steve Schmidt

Byron Adams

Background: The time it takes to isolate individuals from environmental samples and then extract DNA from each individual is one of the problems with generating molecular data from meiofauna such as eutardigrades and bdelloid rotifers. The lack of consistent morphological information and the extreme abundance of these classes makes morphological identification of rare, or even common cryptic taxa a large and unwieldy task. This limits the ability to perform large-scale surveys of the diversity of these organisms. Here we demonstrate a culture-independent molecular survey approach that enables the generation of large amounts of eutardigrade and bdelloid rotifer sequence data directly …

Dataset: Virulance Modulation In Photorhabdus Spp, Byron Adams, Dana Blackburn

Byron Adams

No abstract provided.