Life Sciences Commons^™

Prevalence And Antimicrobial Resistance Patterns Of Salmonella Isolated From Poultry Farms, Carmen G. Velasquez Moreno

Open Access Theses

Antimicrobial agents are used in human medicine to treat infections by inhibiting the growth of bacteria. The same or similar drugs are used in in food-producing animals for therapeutic and sub-therapeutic purposes. Antimicrobial resistant bacteria that develop on farms are a public health risk as these organisms may contribute to treatment failures in infected humans. The main objective of this study was to determine the prevalence of Salmonella isolated from poultry farms in two different seasons to evaluate the effect of recommended biosecurity practices. Specifically, we identified Salmonella serotypes, measured antimicrobial resistance (AMR), and characterized AMR patterns. We hypothesized that …

Billbug (Sphenophorus Spp.) Chemical Ecology And Seasonal Biology In Indiana Turfgrass, Alexandra G. Duffy

Open Access Theses

Billbugs (Coleoptera: Curculionoidea: Sphenophorus) are serious pests of managed turfgrass across North America. Damage symptoms are most visible during stressful periods of the growing season and are commonly confused with disease, drought, or nutrient deficiency. Billbugs are frequently a perennial problem and when misdiagnosed, damage often results in seriously degraded stands of turfgrass that are easily encroached by weeds. Presently, management of billbugs relies heavily on chemical insecticides. Even then, the nationwide assemblage of multiple sympatric billbug species and the cryptic nature of the damaging larval stage makes management of these insects challenging. A better understanding of billbug biology …

Sugarcane Bagasse Hydrolysis Enhancement Using Bsa, Antonio Carlos Freitas Dos Santos

Open Access Theses

Lignocellulose is composed of polysaccharides linked to lignin and other aromatic compounds, making the sugars not readily available to fermentation. This entails that biomass must go through the unit operations of pretreatment and enzyme hydrolysis. Pretreatment opens the structure to allow the enzymes to act on and hydrolyze cellulose and hemicellulose to glucose and/or xylose which in turn are fermented to ethanol. Concomitantly, the enzymes interact with soluble phenols and insoluble solids derived from lignin that inhibit hydrolysis. This leads to high enzyme loadings and higher production costs. Soluble phenols can be eliminated through washing. Insoluble lignin, however, demands another …

Design And Plan Of A Modified Hydroponic Shipping Container For Research, John A. Houtman

Open Access Theses

As the world’s population continues to increase, food production will need to increase in order to meet the predicted rise in food demand. However, with increased pressure on cropland available from environmental effects and urbanization, new innovative methods of crop production need to be researched in order to increase agricultural production with limited land. This research focuses on the design of a single form of urban agriculture that is considered Zfarming and has the potential to produce quality urban agricultural produce through ground-based measures. This project produced detailed step-by-step analysis of the design process, develop variability within the modified hydroponic …

Lower Food Web Dynamics In Lakes Michigan And Huron: Spatial And Temporal Responses To Recent Oligotrophication, Margaret Hutton Stadig

Open Access Theses

Nutrient abatement programs, originally enacted to counter eutrophication have successfully suppressed nutrient loads and relative primary production in marine and freshwater systems. Recently, the additive impacts of invasive filter feeders have further reduced offshore primary production in several aquatic systems throughout the world. It has been hypothesized that the biological activity of these invasive species may sequester nutrients within the nearshore benthic environment, creating steep gradients in primary production between nearshore and offshore habitats. In the Laurentian Great Lakes, past studies of oligotrophication have primarily focused on food web responses in offshore habitats. Organisms at higher trophic levels have been …

A Comparison Of The Efficacy Of Radiant And Immersion Frying Using Hash Brown Patties As A Model Food Matrix, Kaitlin R. Kaczay

Open Access Theses

Radiant frying is an alternative technique to traditional immersion frying. While enjoyed by consumers, immersion fried foods are typically high in fat. Radiant frying uses infrared energy to produce finished products with similar sensory characteristics to traditional frying, but with significantly less fat. This research compared the efficacy of radiant and immersion frying using hash brown patties as a model food matrix by measuring temperature profiles, heat flux profiles, moisture and oil contents, peak shear force, color, mottling, and crust thickness as well as executing semi-trained and untrained sensory evaluations. The FryLess 100K Radiant Fryer was used for all experimentation. …

The Impact Of Tickling Rats On Human-Animal Interactions And Rat Welfare, Megan Renee Lafollette

Open Access Theses

Rats initially fear humans which can lead to negative affect, poor welfare, and difficult handling. Also, modeling and measuring positive affect states in rats can pose an additional challenge. Heterospecific play, or “tickling,” is a handling habituation technique that mimics rat rough-and-tumble play that is being used to study positive affect. It can also be used to reduce fear of human, improve welfare, and elicit a positive affect state. However, current studies implementing the technique in laboratory rats use a wide variety of protocols to achieve differential results. Unlike in laboratory environment, pet store rats experience high levels of novelty …

Evaluation Of A Cool-Season Grass-White Clover Mixture For Low-Nitrogen Input Lawns, Gabriel Adam Macke

Open Access Theses

Turfgrass lawns require supplemental nitrogen (N) to maintain green color and seasonal shoot density. Improper lawn fertilization with excess N or phosphorus has the potential to contaminate both surface and groundwater. Thus, to reduce the reliance on supplemental N fertilization, alternative strategies or novel turf systems like grass-legume mixtures need explored. White clover ( Trifolium repens L.) is a stoloniferous legume that biologically fixes N from the atmosphere and adds N into the soil via mineralization. The objective of this field study was to evaluate the persistence and feasibility of a cool-season grass-clover lawn mixture. A lawn grass mixture with …

Mathematical Analysis Of Feedback Targets Of Bmp Signaling In Drosophila Embryonic Development, Yan Luo

Open Access Theses

Bone morphogenetic proteins (BMPs) drive a range of cellular processes especially in the early stages of embryonic development. This family of proteins acts as one of the most important extracellular signals in development pattern formation across the animal kingdom. Cells in embryos differentiate into different cell types in response to the concentration level of BMP. This complex process is regulated by multiple regulators that serve to tune the signal response.

Extensive experimental and computational research has been performed to analyze BMP regulation in Drosophila, a widely studied model organism, and has advanced our understanding of animal development. Because of …

Residual Effects Of Nitrogen Fertilization On Soil Nitrogen Pools And Corn Growth, Meghan E. Moser

Open Access Theses

Given the dynamic nature of soil nitrogen (N), inorganic N fertilization to corn (Zea mays L.) has potential to alter N pool balance by creating an accumulation or depletion of soil N. Current corn N recommendations in the common corn-soybean rotation of Indiana strive to find the best N rate that maximizes producer profit. Increasing our understanding of soil N will inform producers if they should adjust fertilizer rates for corn to influence maintenance of organic N and Carbon. Our objective was to determine residual N effects from fertilized corn in a corn-soybean rotation by measuring (1) soil N …

Dopamine D1 Receptor Activity In The Basolateral Amygdala Is Important For Mediating Fear, Reward And Safety Discrimination Learning, Ka Ho Ng

Open Access Theses

Post traumatic stress disorder (PTSD) patients frequently show impairment in safety learning (Jovanovic, Kazama, Bachevalier, & Davis, 2012). Since the amygdala is known to be critical for emotional processing(Wassum & Izquierdo, 2015) and dopamine signaling in the amygdala is important for mediating both fear and reward learning, current experiments examined the role of dopamine signaling in the BLA in mediating both safety learning and reward seeking. We manipulated dopamine D1 receptor activity with a D1 receptor agonist (SKF 38393) or D1 receptor antagonist (SCH23390) either systemically or infused directly into the BLA 20 minutes prior to training rats in a …

Modeling Relative Habitat Suitability And Movement Behavior Of Invasive Burmese Pythons In Southern Florida, Holly E. Mutascio

Open Access Theses

Invasive Burmese pythons are established in the Everglades and are altering the ecology of southern Florida. Their distribution in Florida is expanding northward into more urbanized and fragmented habitats. An understanding of the suitability of habitat throughout southern Florida for Burmese pythons and their interaction with Florida’s landscapes through movement behavior is vital for predicting the python’s ability to persist in habitats outside of the Everglades. In this thesis, we use ecological modeling to predict habitat suitability and to investigate personality-dependent dispersal.

First, we used presence-only ecological niche modeling with correction for sampling bias to identify the key landscape variables …

Evaluation Of Thermal Process Lethality In Meat For Non-Pathogenic Escherichia Coli As A Surrogate For Salmonella, Morgan Alyse Redemann

Open Access Theses

Non-typhoidal Salmonella is the leading cause of foodborne illness in the United States, resulting in about 20,000 hospitalizations and nearly 380 deaths annually. The meat processing industry has been especially plagued by Salmonella, from meat-inherent sources and more alarmingly, cross-contamination. For ready-to-eat (RTE) meat products specifically, this can cause significant problems in processing facilities ensuring safe product for consumption, resulting in foodborne illness.

The development of standard lethality compliance guidelines by the United States Department of Agriculture Food Safety and Inspection Service (USDA-FSIS) within Appendix A assists processors in confirming that Salmonella is inactivated in RTE beef and poultry products, …

Cereal Rye Cover Crop Effects On Soil Physical And Chemical Properties In Southeastern Indiana, Joseph D. Rorick

Open Access Theses

Cover crops are growing in popularity in the Midwest, although questions remain about how to include them most effectively in a corn-soybean ( Zea mays L. - Glycine max L.) rotation. This study was conducted to determine the effects of cereal rye ( Secale cereale L.) on soil bulk density and water retention, soil organic carbon, soil nitrogen, and water stable aggregate mean weight diameter after four years of cover crop growth and the effects on soil moisture over a five year period. The study was conducted at the Southeast Purdue Agricultural Center (SEPAC) on silt loam soils. A 14 …

The Impact Of Sleep Disruption On Mouse Physiology, Behavior, And Welfare, Amanda L. Robinson-Junker

Open Access Theses

Laboratory mice are nocturnal, spending most of their daylight hours asleep. But they live in the diurnal world of human investigators and husbandry staff, who primarily work during this rest period. In humans, lack of sleep or sleep that occurs outside the normal circadian sleep period (as in shift work) has adverse effects. These include increased risk of cardiovascular disease, cancer, metabolic disorder, mood disorders, type II diabetes, and obesity. However, it is unknown if mice experience sleep disruption due to these human activities, and, if so, what the adverse effects may be. This is an important question, not only …

Investigations On The Vampire Moth Genus Calyptra Ochsenheimer, Incorporating Taxonomy, Life History, And Bioinformatics (Lepidoptera: Erebidae: Calpinae), Julia L. Snyder

Open Access Theses

The seventeen species and two subspecies described in the genus Calyptra are known to be obligate fruit piercers, with some species being of economic importance. Males within the genus have not only been observed piercing their fruit hosts, but have also been documented to occasionally feed on mammalian blood. The genetic and ecological mechanisms contributing to host preference for either plant or vertebrate hosts in this lineage are unknown. Thus, the focus of this study was to investigate the chemosensory systems between and among Calyptra species exhibiting differential feeding strategies. Before investigating the chemosensory systems within Calyptra, the taxonomy …

Forest Industry Byproducts Improve Soil Quality And Increase Pepper Growth In Three Soils Infested With Phythophthora Blight, Xiaojun Zhao

Open Access Theses

Phytophthora blight is a serious threat to the Midwest vegetable industry, because the oomycete pathogen responsible for this disease, Phytophthora capsici, has a wide host range, can spread quickly in fields, and produces resilient oospores that can survive in soil for years. Phytophthora capsici has become resistant to commonly used fungicides and resistant crop varieties are rare. Amending soil with complex organic substrates has potential to improve soil quality and suppress soil-borne pathogens including P. capsici. Indiana has a significant forest industry with many residual products that could be used as locally available amendments to meet this goal. …

Genomic And Transcriptomic Analysis Of Biofilm Formation In Persistent And Transient L. Monocytogenes, Clara Assisi

Open Access Theses

The Next Generation Sequencing (NGS) has been popularized and aid in the advancement of many fields of science. The other field of science that is being revolutionized is food science and technology, especially food safety. NGS application in food safety, especially the whole genome sequencing analysis (WGS), has been widely used for tracing back the source of outbreaks. The other application of NGS that is also being developed is the analysis of global transcriptomic or RNA-sequencing (RNA-Seq). In this research, we utilize NGS (Ilumina MiSeq Sequencing platform) to perform sequence comparison and identify single nucleotide polymorphisms (SNPs) and observe the …

Antibacterial Activity Of Essential Oil Encapsulated Sodium Iota-Carrageenan Fibers, Carlos D. Carter

Open Access Theses

Spoilage microorganisms cause food waste and loss of quality. While the foodborne pathogen outbreaks lead to thousands of hospitalizations and deaths. Essential oils (EOs), plant extracts, possess the required antimicrobial activities and thus their usage stands out as a feasible approach for controlling the undesirable bacterial growth in food systems. However, EOs are highly volatile and lose their activity upon exposure to environmental conditions. In this regard, their encapsulation in Generally Recognized As Safe (GRAS) matrices such as food grade polysaccharides especially iota-carrageenan could be one of the viable alternatives. Iota-carrageenan, sulfated polysaccharide from marine algae, is being used in …

Measuring The Effect Of Cold Storage, Captive Supply, And Concentration On The Marketing Margin In The U.S. Pork Industry, Yuhang Liu

Open Access Theses

This study investigates the implication of key decision variables at the control of processing firms in a concentrated industry. Succinctly, the decisions examined affect the firm's ability to buffer short run supply and demand fluctuations through storage and access to an alternative source of specialized inputs essential to production. What makes them different in the context of this research is a focus on high-throughput processing plants where capacity utilization can result in cost efficiencies and a high degree of market concentration where adjustments in quantity demanded of the specialized input can affect its price and where adjustments in the quantity …

Impact Of Microwave-Assisted Heating And Enzymatic Treatment On Functional And Antioxidant Properties Of Rainbow Trout (Oncorhynchus Mykiss) By-Product Hydrolysates, Elizabeth Bich Hang Nguyen

Open Access Theses

Fish protein hydrolysates (FPH) have been widely used as a mean to better utilize fishery by-products through the use of proteolytic enzymes to produce a wide range of functional peptides that can be used as food ingredients. Studies have shown that these functional peptides have enhanced interface-stabilizing properties (e.g. functionality) and antioxidant activity. FPH production can be accelerated by using rapid heating methods (e.g. microwave) compared to slower conventional heating (CH). The objective of this study was to investigate the effects of microwave heating (MW) during enzymatic hydrolysis on functionality and antioxidant properties of FPH. Treatments consisted of adding Alcalase™ …

Recombinant Listeria Adhesion Protein Expressing Probiotics Protect Against Listeria Monocytogenes Infection In Animal Models, Valerie E. Ryan

Open Access Theses

Listeria monocytogenes (Lm) is a foodborne pathogen, found ubiquitously in nature, and has a high morbidity rate among immunocompromised individuals, the elderly, and especially pregnant women and their fetuses resulting in abortion, stillbirth, and neonatal infection. There are currently no preventative medical interventions against Lm infection. The Listeria adhesion protein (LAP) is present in both pathogenic and non-pathogenic Listeria (i.e., L. innocua) and has shown to interact with host epithelial proteins causing tight junction dysregulation aiding in pathogen attachment and paracellular translocation across the host intestinal epithelium. Our lab has demonstrated that recombinant probiotics, Lactobacillus casei (LbcWT) expressing LAP …

Genetic Study Of Carotenoids In Maize Grain (Zea Mays L.), Oscar Rafael Espejel Venado

Open Access Theses

Pro-Vitamin A (proVA) carotenoids, which are converted into retinol (Vitamin A) in the human body, have been the subject of human nutrition studies and are a target for biofortification of staple crops. Historically, β-carotene has been the principal target for enhancing levels of proVA, yet there is recent interest in enhancing the proVA carotenoid β-cryptoxanthin. Studies have shown that β-cryptoxanthin has excellent bioavailability, and its use in maize may be nearly as effective as β-carotene in providing retinol. The primary aim of this study was to gain a better understanding of the genetic control of levels of β-cryptoxanthin, conversion of …

The Role Of Hif1alpha And Hif2alpha In Muscle Development And Satellite Cell Function, Shiqi Yang

Open Access Theses

Hypoxia inducible factors (HIFs) are central mediators of cellular responses to fluctuations of oxygen, an environmental regulator of stem cell activity. Muscle satellite cells are myogenic stem cells whose quiescence, activation, self-renewal and differentiation are influenced by microenvironment oxygen levels. However, the in vivo roles of HIFs in quiescent satellite cells and activated satellite cells (myoblasts) are poorly understood. Expression analyses indicate that HIF1α and HIF2α are preferentially expressed in pre- and post-differentiation myoblasts, respectively. Interestingly, double knockout of HIF1α and HIF2α (HIF1α/2α dKO) in embryonic myoblasts results in apparently normal muscle development and growth. However, HIF1α/2α dKO in postnatal …

A County Level Analysis Of 2014 Farm Bill Commodity Payments, Seth Cole Boone

Open Access Theses

United States commodity policy was subject to a large transition in how the federal government supports agricultural producers when the 2014 Farm Bill was passed in February of 2014. The new programs are the Agricultural Risk Coverage (ARC) and the Price Loss Coverage (PLC) programs. Methods used by the federal government to distribute farm income support have evolved from constant decoupled payments into programs that respond to agricultural market fluctuations, delivering payments that are inversely related to market performance.

The United States has a long history of government programs directly and indirectly supporting farmers and their income, dating back to …

Farmers' Use Of Mobile Phone Technology For Agricultural Information Services In Lilongwe District, Malawi, Benjamin F. Chisama

Open Access Theses

Mobile phone technology can be a useful tool to provide farmers with relevant and reliable agricultural information for critical farming decisions in developing countries such as Malawi. An increasing number of rural farmers have been faced with information asymmetry challenges due to some pitfalls in the extension systems. In addition, knowledge gaps on farmers’ use of mobile phone technology; their awareness and use of MAIS; and their preferred topics to be delivered using mobile platforms were identified. However, little was known on how farmers were using existing MAIS. This study’s aim was to explore the potential of providing mobile agricultural …

Pilot Study Of The Effect Of High-Protein, Renal-Appropriate Meals During Hemodialysis On Intradialytic Hypotension In Maintenance Hemodialysis Patients, Mun Sun Choi

Open Access Theses

Background: In the United Sates (US), more than 400,000 people have end stage renal disease (ESRD) or chronic kidney disease (CKD) stage 5D requiring in-center hemodialysis (HD), and approximately $35 billion is spent annually in healthcare costs. Maintenance HD patients with ESRD have increased protein (1.2 g/kg/d) and energy (30-35 kcal/kg/d) requirements, but the average protein and energy intake in these patients is only 0.8-1.0 g/kg/d and 20-25 kcal/kg/d, respectively. Subsequently, protein-energy wasting (PEW) is common, affecting up to an estimated 75% of maintenance HD patients, and low protein and energy intake are one of the main contributors of …

The Biology And Management Of Waterhemp In Indiana, Joseph M. Heneghan

Open Access Theses

Waterhemp is a dioecious weed species indigenous to the Midwestern United states yet it has only recently become problematic in agronomic crop production in Indiana. Waterhemp is a small-seeded broadleaf which has increased in prevalence in conjunction with an increase in conservation tillage practices. Waterhemp germinates and emerges from the top 3 cm of soil and is known to exhibit extended periods of continual emergence, longer than most other summer annual weed species that are typically present in agronomic production settings. As a C4 species, waterhemp then grows rapidly and is capable of producing thousands of seeds, while effectively competing …

The Labor Market Consequences Of Endogenous Low-Skill Migration With A Market-Based Immigration Policy, German A. Marquez Alcala

Open Access Theses

The undocumented migration of Mexican nationals to the U.S. is largely influenced by labor demand in low-skill sectors. The legal migration channels available to Mexican nationals with little education are based on family petitions and subject to visa quotas which are dwarfed by the demand for entry to the United States; visa approval can take upwards of 20 years for a Mexican national with little education and few resources. Thus, undocumented immigration is a more responsive unskilled labor distribution mechanism than the existing quota-based immigration policy. However, the restrictive legal migration channels and increased costs of undocumented migration are stifling …

Metabolomics Approach To Investigate Oxidation Stabilities In Different Bovine Muscles With Postmortem Aging, Danyi Ma

Open Access Theses

Postmortem aging has been extensively practiced in the meat industry for decades due to its beneficial impact on improving eating quality attributes. However, prolonged postmortem aging may adversely impact color and/or lipid oxidation stabilities of meat, leading to decreased display shelf-life and increased rancid off-flavor. As physical/biochemical changes occur during postmortem aging, metabolites that impart antioxidant or pro-oxidant activities are generated or consumed, which could be related to the oxidation stabilities of postmortem muscles with aging. However, the underlying mechanism of the aging-induced oxidation susceptibility has not been fully established. Therefore, the overall objective of this thesis was to understand …